Re: [Open Babel] Problem in converting a PDB file to MOL2

2015-11-18 Thread Dimitri Maziuk
On 2015-11-18 05:05, Alexandre Fassio wrote: > For example, a cellobiose can be represented as two glucoses (GLCs). Thus, > it is difficult to know without a previous knowledge, which ligand is > represented by these two GLCs. > > In another case, I had a PDB with 8 ligands covalently bonded and

Re: [Open Babel] Problem in converting a PDB file to MOL2

2015-11-18 Thread Alexandre Fassio
Dimitri Maziuk wrote > On 11/17/2015 01:14 PM, Alexandre Fassio wrote: > >> I've tried to use the mmCIF but I wasn't able to convert a ligand in the >> mmCIF format to MOL2 by using Open Babel. >> >> For some reason that I don't know, I always got the message "0 molecules >> converted". > >