Re: [Open Babel] changes to fingerprint generation, and FPS output

2019-01-08 Thread Andrew Dalke
> On Jan 7, 2019, at 14:10, Noel O'Boyle wrote: > > Can you clarify the requirement for bumping the version? That is, which of > the following is the invariant: > 1. Any molecule represented in any format changes must create the same > fingerprint > 2. Any SMILES string must create the same fin

Re: [Open Babel] NxN Tanimoto similarity calculations/searches

2019-01-08 Thread Noel O'Boyle
Right now, the best approach is to use Andrew Dalke's chemfp. - Noel On Mon, 7 Jan 2019 at 15:12, John Hutchinson wrote: > Hello all, > > > > I have a list of ~4000 SMILES codes. For each substance, I want to > determine all the substances with Tanimoto similarity >70%. I generated a > fastsear