Re: [Open Babel] substructure search fails

2019-09-10 Thread Noel O'Boyle
Can you provide a single example of a molecule that it misses? We can then try to explain why or work out a solution. Regards, - Noel On Tue, 10 Sep 2019 at 13:33, Vaibhav Dixit wrote: > Dear Openbabel community, > I'm trying to extract all compounds from an sdf file which contain an OH >

[Open Babel] substructure search fails

2019-09-10 Thread Vaibhav Dixit
Dear Openbabel community, I'm trying to extract all compounds from an sdf file which contain an OH group (phenolic or aliphatic). For this I have tried the following command in my anaconda prompt installation of babel. But I'm not getting the expected result and no molecule is retrieved. I get