Re: [Open Babel] SMILES, SMARTS, and PDB

2013-07-10 Thread Brett T. Hannigan
I think this will work great. Thanks for the suggestion. -Original Message- From: Maciek Wójcikowski mac...@wojcikowski.pl Sent: ‎7/‎8/‎2013 12:06 PM To: Brett Hannigan godot_gil...@yahoo.com Cc: Brett T. Hannigan bret...@mail.med.upenn.edu; openbabel-discuss@lists.sourceforge.net

[Open Babel] SMILES, SMARTS, and PDB

2013-07-05 Thread Brett T. Hannigan
query to look for my substructures. However, if the SMARTS query reports that the substructure is present in the molecule, I'm not sure how to identify the atoms in the pdb file which make up the match. Any ideas? -- ** Brett T. Hannigan 8011 Ardleigh St