[Open Babel] Energy Minimization of complex of two molecules

2012-04-23 Thread Чугунов Антон
 Dear Open Babel users, I'm writing a script to reconstruct a complex of two peptides. I employ OB python interface and also Pybel to make necessary transformations of both peptides, but finally I have to perform energy minimization of the whole complex to avoid bumping of side chains.It seems to

Re: [Open Babel] Energy Minimization of complex of two molecules

2012-04-23 Thread Maciek Wójcikowski
Have you tried H1 + H2? Actually this wasn't working for me in perl, but it's supposed to be working in Python. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl W dniu 23 kwietnia 2012 13:52 użytkownik Чугунов Антон batc...@yandex.runapisał: Dear Open Babel users,