Re: [Open Babel] Fwd: stereo config

2013-11-20 Thread Dimitri Maziuk
On 11/18/2013 06:56 PM, Craig James wrote: For L-Alanine: PC: InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1 PDB: InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1 OB: InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1/i4+1 Are you saying there is a

Re: [Open Babel] Fwd: stereo config

2013-11-20 Thread Craig James
On Wed, Nov 20, 2013 at 11:12 AM, Dimitri Maziuk dmaz...@bmrb.wisc.eduwrote: On 11/18/2013 06:56 PM, Craig James wrote: For L-Alanine: PC: InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1 PDB: InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1 OB:

Re: [Open Babel] Fwd: stereo config

2013-11-20 Thread Dimitri Maziuk
On 11/20/2013 02:16 PM, Craig James wrote: Does your application require these older designations? Or could you instead use the atom- and bond-centric definitions that are built in to OpenBabel? My applications need to work with mmCIF data model. MmCIF defines

[Open Babel] Fwd: stereo config

2013-11-18 Thread Craig James
As a rule, you should always include all input files you use. Otherwise we can't say much about the output you provided. On Mon, Nov 18, 2013 at 4:09 PM, Dimitri Maziuk dmaz...@bmrb.wisc.eduwrote: On 11/16/2013 11:40 AM, Dimitri Maziuk wrote: I guess now I'll have to come up with a different