Re: [Open Babel] How to convert inchikey to other formats?

2020-03-25 Thread Peng Yu
> They're all database lookups AFAIK. If all you want is more keys, you > need the biggest database. If ChemSpider has a larger molecule database > than PubChem, then it will be "more comprehensive". Which one is the most comprehensive according to your experience? -- Regards, Peng

Re: [Open Babel] How to convert inchikey to other formats?

2020-03-24 Thread dmaziuk via OpenBabel-discuss
On 3/23/2020 2:28 PM, Peng Yu wrote: As noted, these will only work for molecules in PubChem (the NIH resolver) and UniChem (the Chembl resolver). I see ChemSpider is mentioned here. Is it more comprehensive than PubChem and ChEMBL? Thanks. They're all database lookups AFAIK. If all you

Re: [Open Babel] How to convert inchikey to other formats?

2020-03-23 Thread Peng Yu
> There are several 'resolvers' out there for InChi Keys. > https://cactus.nci.nih.gov/blog/?tag=inchikey-resolver > http://chembl.blogspot.com/2016/03/this-python-inchi-key-resolver-will.html > > As noted, these will only work for molecules in PubChem (the NIH resolver) > and UniChem (the Chembl

Re: [Open Babel] How to convert inchikey to other formats?

2020-03-23 Thread Geoffrey Hutchison
> PS: there is an unpractical way though: compute the inchikey of all possible >molecules, until you hit the key that you were looking for. There are several 'resolvers' out there for InChi Keys. https://cactus.nci.nih.gov/blog/?tag=inchikey-resolver

Re: [Open Babel] How to convert inchikey to other formats?

2020-03-22 Thread Francois Berenger
On 23/03/2020 12:21, Peng Yu wrote: Hi, I don't find how to take inchikey input and convert it to other formats. You should read about what really is an inchikey: https://en.wikipedia.org/wiki/International_Chemical_Identifier#InChIKey While you are at it, maybe you can read about what is

Re: [Open Babel] How to convert inchikey to other formats?

2020-03-22 Thread Rudy Richardson
inchikey is write only. On Sun, Mar 22, 2020 at 11:21 PM Peng Yu wrote: > Hi, > > I don't find how to take inchikey input and convert it to other formats. > > http://openbabel.org/docs/current/FileFormats/Overview.html > > I got the following error. Could anybody show me the correct way to >

[Open Babel] How to convert inchikey to other formats?

2020-03-22 Thread Peng Yu
Hi, I don't find how to take inchikey input and convert it to other formats. http://openbabel.org/docs/current/FileFormats/Overview.html I got the following error. Could anybody show me the correct way to make the conversion? Thanks. $ obabel -iinchikey <(echo GFAUNYMRSKVDJL-UHFFFAOYSA-N) -o