[Open Babel] "b" option in INOPTIONS in python

2017-07-30 Thread devw
Hi, I have some python code I'm working with, parts of which were written by someone else, including the bit I'm currently struggling with. The code has a flag, babel_bond, which is described in the Help as "tells open babel to automatically calculate bonds". Overall this code has been working, i

Re: [Open Babel] "b" option in INOPTIONS in python

2017-08-10 Thread devw
as stated, I already read the docs available for this, and the description given doesn't match the actual behavior received when INOPTIONS "b" is set. Hence my looking for either more updated documentation or, better, someone who can explain what is actually going on in the code cited. -- View t

Re: [Open Babel] "b" option in INOPTIONS in python

2017-08-10 Thread devw
To be more explicit, it's not for a particular format, it has an effect on how babelbond reads many formats, and that effect is not as stated in the documentation i could find that mentioned b. -- View this message in context: http://forums.openbabel.org/b-option-in-INOPTIONS-in-python-tp466013

[Open Babel] Suppress openbabel warnings in python

2018-03-21 Thread devw
I would like to be able to suppress warnings such as: *** Open Babel Warning in OpenBabel::OBGlobalDataBase::Init Cannot open element.txt defaulting to compiled data. so that they do not go to stderr. Have searched extensively for an answer on the forum or elsewhere but can't find anything ab