pass_through attribute in ADL 1.5
In fact, the emphasis attribute of 13606 is a CV. 2012/1/26 Diego Bosc? yampeku at gmail.com but they won't show everything on a 'full' GUI either. Maybe what is needed is not only a boolean but a way to tell exactly the criteria with different values of a controlled vocabulary, such as 'mandatory', 'recommended', 'passable'/'skippable'... 2012/1/26 David Moner damoca at gmail.com: Following this new sense for it, I think that the implications for a GUI or visual representation would depend on a decision of the implementers. If the screen space is reduced, they could opt for just showing the clinically relevant data and leave the rest for a second screen, a pop-up or something like that. 2012/1/25 Diego Bosc? yampeku at gmail.com Would this attribute value change depending on where is the archetype used? i.e. if we use it on a GUI of a smartphone rather than a standalone or web application 2012/1/25 David Moner damoca at gmail.com: 2012/1/25 Thomas Beale thomas.beale at oceaninformatics.com Maybe another way of understanding this flag is as 'this node can be skipped without loss of meaning'. I would be very interested to know if we should make AQL queries sensitive to this flag. Has anyone thought about that? In this sense I can see the reason for this attribute, since it can be understood as part of the documentation of the clinical model. But definitely it is not clearly described at the specs since there it seems to be linked to the presentation template only. I fact, there is a similar attribute in EN13606 ITEM class, but used in an opposite sense. The attribute is emphasis and it is described as A way of denoting that the composer wished to mark this ITEM as being of particular note (an unusual measurement value, an unexpected outcome, anything that might be considered necessary to highlight to a future reader). I have never thought about this. I don't know if this kind of annotations (this item is important or clinically relevant or not) better fits as part of the RM or part of the AOM. In other words, if this marker is related to a specific data instance or to a data item definition in an archetype. Thoughts on this? -- David Moner Cano Grupo de Inform?tica Biom?dica - IBIME Instituto ITACA http://www.ibime.upv.es Universidad Polit?cnica de Valencia (UPV) Camino de Vera, s/n, Edificio G-8, Acceso B, 3? planta Valencia ? 46022 (Espa?a) ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- David Moner Cano Grupo de Inform?tica Biom?dica - IBIME Instituto ITACA http://www.ibime.upv.es Universidad Polit?cnica de Valencia (UPV) Camino de Vera, s/n, Edificio G-8, Acceso B, 3? planta Valencia ? 46022 (Espa?a) ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- David Moner Cano Grupo de Inform?tica Biom?dica - IBIME Instituto ITACA http://www.ibime.upv.es Universidad Polit?cnica de Valencia (UPV) Camino de Vera, s/n, Edificio G-8, Acceso B, 3? planta Valencia ? 46022 (Espa?a) -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/b6c254ed/attachment.html
pass_through attribute in ADL 1.5
On 25/01/2012 22:45, David Moner wrote: 2012/1/25 Thomas Beale thomas.beale at oceaninformatics.com mailto:thomas.beale at oceaninformatics.com Maybe another way of understanding this flag is as 'this node can be skipped without loss of meaning'. I would be very interested to know if we should make AQL queries sensitive to this flag. Has anyone thought about that? In this sense I can see the reason for this attribute, since it can be understood as part of the documentation of the clinical model. But definitely it is not clearly described at the specs since there it seems to be linked to the presentation template only. I fact, there is a similar attribute in EN13606 ITEM class, but used in an opposite sense. The attribute is emphasis and it is described as A way of denoting that the composer wished to mark this ITEM as being of particular note (an unusual measurement value, an unexpected outcome, anything that might be considered necessary to highlight to a future reader). I remember many arguments about that one in CEN meetings. It was intended originally to be used on text items. I have never thought about this. I don't know if this kind of annotations (this item is important or clinically relevant or not) better fits as part of the RM or part of the AOM. In other words, if this marker is related to a specific data instance or to a data item definition in an archetype. well I am always suspicious of subjective markers like 'important' and so on. At least 'pass-through' is a mechanistic kind of concept. I agree that it has not been analysed properly though, and I think that can only be done in the clinical realm. At the moment, I think we need to support it because it is already in use in the .oet templates. The question is whether it turns out to have some proper semantic basis or is indeed 'just presentation'. We should ask why it is there at all: the reason is that it deals with information nodes that are not needed cognitively (i.e. for human understanding) but are an unavoidable artefact of information trees - but only sometimes... as far as I know there is no reliable algorithm for removing these nodes from presentation. - thomas -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/d7a2d003/attachment.html
pass_through attribute in ADL 1.5
On 25/01/2012 23:03, David Moner wrote: Following this new sense for it, I think that the implications for a GUI or visual representation would depend on a decision of the implementers. If the screen space is reduced, they could opt for just showing the clinically relevant data and leave the rest for a second screen, a pop-up or something like that. I know that sounds logical but that is not the way clinical people use this attribute. They look at certain archetypes and simply decide to add it, with out regard for which particular device it is displayed on. For them it is not optional to remove it or keep it - in a given archetype. In other archetypes it is not used at all. I will try to obtain some examples... - thomas
How to get the URL to an archetype on the CKM?
Hi, When I want to show an archetype to someone I have to tell him/her to go to the CKM and do some search.Is there any way to get an URL to display one archetype on the CKM? -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/23dd030e/attachment.html
How to get the URL to an archetype on the CKM?
Hi Pablo, sure, the easiest is probably to go to the Share with Colleague Tab for that archetype. You'll find a) the direct URL to this archetype which you can copy or share using AddToAny and b) use the form to send it directly. For details like referring to a specific revision of the archetype, or opening a specific view (e.g. the Mindmap view) see http://www.openehr.org/wiki/display/healthmod/Opening+a+Resource+on+CKM+Start Regards Sebastian On 26.01.2012 16:42, pablo pazos wrote: Hi, When I want to show an archetype to someone I have to tell him/her to go to the CKM and do some search. Is there any way to get an URL to display one archetype on the CKM? -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/50e764e6/attachment.html
How to get the URL to an archetype on the CKM?
Hello Pablo, The way for accessing an archetype on the CKM from an URL is to build a URL similar to this http://www.openehr.org/knowledge/#showArchetypeById_openEHR-EHR-OBSERVATION.lab_test-lipids.v1 http://www.openehr.org/knowledge/#showArchetypeById_openEHR-EHR-OBSERVATION.lab_test-full_blood_count.v1 Regards 2012/1/26 pablo pazos pazospablo at hotmail.com: Hi, When I want to show an archetype to someone I have to tell him/her to go to the CKM and do some search. Is there any way to get an URL to display one archetype on the CKM? -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
How to get the URL to an archetype on the CKM?
Hi Pablo, Open the archetype and press the share with colleague button (Envelope icon) this gives you a few options. Ian Dr Ian McNicoll office +44 (0)1536 414 994 fax +44 (0)1536 516317 mobile +44 (0)775 209 7859 skype ianmcnicoll ian.mcnicoll at oceaninformatics.com Clinical Modelling Consultant,?Ocean Informatics, UK Director/Clinical Knowledge Editor openEHR Foundation ?www.openehr.org/knowledge Honorary Senior Research Associate, CHIME, UCL SCIMP Working Group, NHS Scotland BCS Primary Health Care ?www.phcsg.org On 26 January 2012 15:42, pablo pazos pazospablo at hotmail.com wrote: Hi, When I want to show an archetype to someone I have to tell him/her to go to the CKM and do some search. Is there any way to get an URL to display one archetype on the CKM? -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
ADL reading
Hello guys, i'm trying to build a app using arquetypes and i need to read the ADL to build my interface. where i can get some examples how reading ADL 1.5? Is there some API to do that? thanks in advance, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/b9c66858/attachment.html
ADL reading
Hello Marcio Perhaps the quickest route to do this would be to use the java reference implementation (http://www.openehr.org/projects/java.html) and more specifically the classes ADLParser and Archetype. Essentially, you create a new ADLParser object passing as a parameter a standard file object pointing to your ADL file and then from the parser you can obtain an Archetype object using the parse() member function. //For a (minimal) example File fd; ADLParser theParser; Archetype MyArchetype; fd = new File(openEHR-EHR-OBSERVATION.blood_pressure.v1.adl); theParser = new ADLParser(fd); MyArchetype = theParser.parse(); //-- // It omits some exception handling but this is the main idea You can now traverse the archetype structure implied by your .adl file using the functions of Archetype such as getAdlVersion(), getConceptName(), getChildren() and others. You could also use the Clinical Knowledge Manager (http://openehr.org/knowledge/) to browse archetypes of interest and download them in XML (rather than ADL). From there you could possibly process the XML to recover anything you want (concepts, terms, labels etc). The code from the opereffa project (http://opereffa.chime.ucl.ac.uk/introduction.jsf) might also be helpful for you, depending on what exactly you are trying to do (Web app in Java, deployed over Tomcat). That one is very detailed in that it includes all the necessary (and extensive) work that is required to handle Archetype(able) information through the current reference implementation and the Data Access Objects mechanism. If my memory is not failing me, it also includes an actual user interface generator so that forms accepting data are constructed through the archetypes. I hope this helps. All the best Athanasios Anastasiou On 26/01/2012 17:43, M?rcio Costa wrote: Hello guys, i'm trying to build a app using arquetypes and i need to read the ADL to build my interface. where i can get some examples how reading ADL 1.5? Is there some API to do that? thanks in advance, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com mailto:mdckoury at gmail.com
ADL reading
Hello Athanasios , your information helped me a lot! I was a little bit lost in the world of openEHR. Now i know how to start my journey! Thanks you very much! Best Regards, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 Athanasios Anastasiou athanasios.anastasiou at plymouth.ac.uk Hello Marcio Perhaps the quickest route to do this would be to use the java reference implementation (http://www.openehr.org/projects/java.html) and more specifically the classes ADLParser and Archetype. Essentially, you create a new ADLParser object passing as a parameter a standard file object pointing to your ADL file and then from the parser you can obtain an Archetype object using the parse() member function. //For a (minimal) example File fd; ADLParser theParser; Archetype MyArchetype; fd = new File(openEHR-EHR-OBSERVATION.blood_pressure.v1.adl); theParser = new ADLParser(fd); MyArchetype = theParser.parse(); //-- // It omits some exception handling but this is the main idea You can now traverse the archetype structure implied by your .adl file using the functions of Archetype such as getAdlVersion(), getConceptName(), getChildren() and others. You could also use the Clinical Knowledge Manager (http://openehr.org/knowledge/) to browse archetypes of interest and download them in XML (rather than ADL). From there you could possibly process the XML to recover anything you want (concepts, terms, labels etc). The code from the opereffa project (http://opereffa.chime.ucl.ac.uk/introduction.jsf) might also be helpful for you, depending on what exactly you are trying to do (Web app in Java, deployed over Tomcat). That one is very detailed in that it includes all the necessary (and extensive) work that is required to handle Archetype(able) information through the current reference implementation and the Data Access Objects mechanism. If my memory is not failing me, it also includes an actual user interface generator so that forms accepting data are constructed through the archetypes. I hope this helps. All the best Athanasios Anastasiou On 26/01/2012 17:43, M?rcio Costa wrote: Hello guys, i'm trying to build a app using arquetypes and i need to read the ADL to build my interface. where i can get some examples how reading ADL 1.5? Is there some API to do that? thanks in advance, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com mailto:mdckoury at gmail.com ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/68c5ce2d/attachment.html
ADL reading
Hi Marciio, You should also look at http://code.google.com/p/open-ehr-gen-framework/ The author Pablo Pazos is on this list and will no doubt have how own suggestions. Do not despair - openEHR confusion is a normal pre-requisite to eventual enlightenment :-) Ian Dr Ian McNicoll office +44 (0)1536 414 994 fax +44 (0)1536 516317 mobile +44 (0)775 209 7859 skype ianmcnicoll ian.mcnicoll at oceaninformatics.com Clinical Modelling Consultant,?Ocean Informatics, UK Director/Clinical Knowledge Editor openEHR Foundation ?www.openehr.org/knowledge Honorary Senior Research Associate, CHIME, UCL SCIMP Working Group, NHS Scotland BCS Primary Health Care ?www.phcsg.org 2012/1/26 M?rcio Costa mdckoury at gmail.com: Hello Athanasios , your information helped me a lot! I was a little bit lost in the world of openEHR. Now i know how to start my journey! Thanks you very much! Best Regards, M?rcio Costa B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 Athanasios Anastasiou athanasios.anastasiou at plymouth.ac.uk Hello Marcio Perhaps the quickest route to do this would be to use the java reference implementation (http://www.openehr.org/projects/java.html) and more specifically the classes ADLParser and Archetype. Essentially, you create a new ADLParser object passing as ?a parameter a standard file object pointing to your ADL file and then from the parser you can obtain an Archetype object using the parse() member function. //For a (minimal) example File fd; ADLParser theParser; Archetype MyArchetype; fd = new File(openEHR-EHR-OBSERVATION.blood_pressure.v1.adl); theParser = new ADLParser(fd); MyArchetype = theParser.parse(); //-- // It omits some exception handling but this is the main idea You can now traverse the archetype structure implied by your .adl file using the functions of Archetype such as getAdlVersion(), getConceptName(), getChildren() and others. You could also use the Clinical Knowledge Manager (http://openehr.org/knowledge/) to browse archetypes of interest and download them in XML (rather than ADL). From there you could possibly process the XML to recover anything you want (concepts, terms, labels etc). The code from the opereffa project (http://opereffa.chime.ucl.ac.uk/introduction.jsf) might also be helpful for you, depending on what exactly you are trying to do (Web app in Java, deployed over Tomcat). That one is very detailed in that it includes all the necessary (and extensive) work that is required to handle Archetype(able) information through the current reference implementation and the Data Access Objects mechanism. If my memory is not failing me, it also includes an actual user interface generator so that forms accepting data are constructed through the archetypes. I hope this helps. All the best Athanasios Anastasiou On 26/01/2012 17:43, M?rcio Costa wrote: Hello guys, i'm trying to build a app using arquetypes and i need to read the ADL to build my interface. where i can get some examples how reading ADL 1.5? Is there some API to do that? thanks in advance, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com mailto:mdckoury at gmail.com ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
ADL reading
Just one note of caution - the Java project is in the middle of upgrading to ADL/AOM 1.5 from 1.4. So the operational code that is there today is for ADL 1.4. If you are just getting started, the differences probably won't matter for a while. If you specifically want to see ADL 1.5, you can use the ADL Workbench http://www.openehr.org/svn/ref_impl_eiffel/TRUNK/apps/adl_workbench/doc/web/index.html. This is written in Eiffel, which is probably not a language you are familiar with, but the tool, and test archetypes http://www.openehr.org/svn/knowledge2/TRUNK/archetypes/ will help you understand ADL 1.5, along with this wiki page. http://www.openehr.org/wiki/pages/viewpage.action?pageId=196633 In a few months the Java code base will catch up, so ADL 1.5 in Java won't be that far away. - thomas On 26/01/2012 18:20, Athanasios Anastasiou wrote: Hello Marcio Perhaps the quickest route to do this would be to use the java reference implementation (http://www.openehr.org/projects/java.html) and more specifically the classes ADLParser and Archetype. Essentially, you create a new ADLParser object passing as a parameter a standard file object pointing to your ADL file and then from the parser you can obtain an Archetype object using the parse() member function. //For a (minimal) example File fd; ADLParser theParser; Archetype MyArchetype; fd = new File(openEHR-EHR-OBSERVATION.blood_pressure.v1.adl); theParser = new ADLParser(fd); MyArchetype = theParser.parse(); //-- // It omits some exception handling but this is the main idea You can now traverse the archetype structure implied by your .adl file using the functions of Archetype such as getAdlVersion(), getConceptName(), getChildren() and others. You could also use the Clinical Knowledge Manager (http://openehr.org/knowledge/) to browse archetypes of interest and download them in XML (rather than ADL). From there you could possibly process the XML to recover anything you want (concepts, terms, labels etc). The code from the opereffa project (http://opereffa.chime.ucl.ac.uk/introduction.jsf) might also be helpful for you, depending on what exactly you are trying to do (Web app in Java, deployed over Tomcat). That one is very detailed in that it includes all the necessary (and extensive) work that is required to handle Archetype(able) information through the current reference implementation and the Data Access Objects mechanism. If my memory is not failing me, it also includes an actual user interface generator so that forms accepting data are constructed through the archetypes. I hope this helps. All the best Athanasios Anastasiou On 26/01/2012 17:43, M?rcio Costa wrote: Hello guys, i'm trying to build a app using arquetypes and i need to read the ADL to build my interface. where i can get some examples how reading ADL 1.5? Is there some API to do that? thanks in advance, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.commailto:mdckoury at gmail.com ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- Ocean Informatics *Thomas Beale Chief Technology Officer, Ocean Informatics http://www.oceaninformatics.com/* Chair Architectural Review Board, /open/EHR Foundation http://www.openehr.org/ Honorary Research Fellow, University College London http://www.chime.ucl.ac.uk/ Chartered IT Professional Fellow, BCS, British Computer Society http://www.bcs.org.uk/ Health IT blog http://www.wolandscat.net/ * * -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/a6368a80/attachment.html -- next part -- A non-text attachment was scrubbed... Name: ocean_full_small.jpg Type: image/jpeg Size: 5828 bytes Desc: not available URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/a6368a80/attachment.jpg
ADL reading
I would like to thank all for the attention and help. Best Regards, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 Thomas Beale thomas.beale at oceaninformatics.com Just one note of caution - the Java project is in the middle of upgrading to ADL/AOM 1.5 from 1.4. So the operational code that is there today is for ADL 1.4. If you are just getting started, the differences probably won't matter for a while. If you specifically want to see ADL 1.5, you can use the ADL Workbenchhttp://www.openehr.org/svn/ref_impl_eiffel/TRUNK/apps/adl_workbench/doc/web/index.html. This is written in Eiffel, which is probably not a language you are familiar with, but the tool, and test archetypeshttp://www.openehr.org/svn/knowledge2/TRUNK/archetypes/will help you understand ADL 1.5, along with this wiki page.http://www.openehr.org/wiki/pages/viewpage.action?pageId=196633In a few months the Java code base will catch up, so ADL 1.5 in Java won't be that far away. - thomas On 26/01/2012 18:20, Athanasios Anastasiou wrote: Hello Marcio Perhaps the quickest route to do this would be to use the java reference implementation (http://www.openehr.org/projects/java.html) and more specifically the classes ADLParser and Archetype. Essentially, you create a new ADLParser object passing as a parameter a standard file object pointing to your ADL file and then from the parser you can obtain an Archetype object using the parse() member function. //For a (minimal) example File fd; ADLParser theParser; Archetype MyArchetype; fd = new File(openEHR-EHR-OBSERVATION.blood_pressure.v1.adl); theParser = new ADLParser(fd); MyArchetype = theParser.parse(); //-- // It omits some exception handling but this is the main idea You can now traverse the archetype structure implied by your .adl file using the functions of Archetype such as getAdlVersion(), getConceptName(), getChildren() and others. You could also use the Clinical Knowledge Manager (http://openehr.org/knowledge/) to browse archetypes of interest and download them in XML (rather than ADL). From there you could possibly process the XML to recover anything you want (concepts, terms, labels etc). The code from the opereffa project (http://opereffa.chime.ucl.ac.uk/introduction.jsf) might also be helpful for you, depending on what exactly you are trying to do (Web app in Java, deployed over Tomcat). That one is very detailed in that it includes all the necessary (and extensive) work that is required to handle Archetype(able) information through the current reference implementation and the Data Access Objects mechanism. If my memory is not failing me, it also includes an actual user interface generator so that forms accepting data are constructed through the archetypes. I hope this helps. All the best Athanasios Anastasiou On 26/01/2012 17:43, M?rcio Costa wrote: Hello guys, i'm trying to build a app using arquetypes and i need to read the ADL to build my interface. where i can get some examples how reading ADL 1.5? Is there some API to do that? thanks in advance, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com mailto:mdckoury at gmail.com mdckoury at gmail.com ___ openEHR-technical mailing listopenEHR-technical at openehr.orghttp://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- [image: Ocean Informatics] *Thomas Beale Chief Technology Officer, Ocean Informaticshttp://www.oceaninformatics.com/ * Chair Architectural Review Board, *open*EHR Foundationhttp://www.openehr.org/ Honorary Research Fellow, University College Londonhttp://www.chime.ucl.ac.uk/ Chartered IT Professional Fellow, BCS, British Computer Societyhttp://www.bcs.org.uk/ Health IT blog http://www.wolandscat.net/ * * ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/fa37f512/attachment.html
ADL reading
Hi M?rcio, As Ian mentioned, we have developed an EHR tool based on openEHR.The EHRGen has a component to load and cache archetypes on memory, that has the code Athanasios mentioned, you can see it here: http://code.google.com/p/open-ehr-gen-framework/source/browse/trunk/open-ehr-gen/src/groovy/archetype_repository/ArchetypeManager.groovy See method getArchetype(archetypId). We use the Java Ref Impl to parse ADL files. Hope that helps. -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos From: Ian.McNicoll at oceaninformatics.com Date: Thu, 26 Jan 2012 18:44:38 + Subject: Re: ADL reading To: openehr-technical at openehr.org Hi Marciio, You should also look at http://code.google.com/p/open-ehr-gen-framework/ The author Pablo Pazos is on this list and will no doubt have how own suggestions. Do not despair - openEHR confusion is a normal pre-requisite to eventual enlightenment :-) -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/7b1fd0c5/attachment.html
ADL reading
M?rcio, We have some academic projects developed at UFMG / Brazil involving the use of ADL. Please, feel free to contact us directly if you have interest. Regards, Marcelo Rodrigues dos Santos UFMG/FUMEC Em 26 de janeiro de 2012 18:53, M?rcio Costa mdckoury at gmail.com escreveu: I would like to thank all for the attention and help. Best Regards, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 Thomas Beale thomas.beale at oceaninformatics.com Just one note of caution - the Java project is in the middle of upgrading to ADL/AOM 1.5 from 1.4. So the operational code that is there today is for ADL 1.4. If you are just getting started, the differences probably won't matter for a while. If you specifically want to see ADL 1.5, you can use the ADL Workbenchhttp://www.openehr.org/svn/ref_impl_eiffel/TRUNK/apps/adl_workbench/doc/web/index.html. This is written in Eiffel, which is probably not a language you are familiar with, but the tool, and test archetypeshttp://www.openehr.org/svn/knowledge2/TRUNK/archetypes/will help you understand ADL 1.5, along with this wiki page.http://www.openehr.org/wiki/pages/viewpage.action?pageId=196633In a few months the Java code base will catch up, so ADL 1.5 in Java won't be that far away. - thomas On 26/01/2012 18:20, Athanasios Anastasiou wrote: Hello Marcio Perhaps the quickest route to do this would be to use the java reference implementation (http://www.openehr.org/projects/java.html) and more specifically the classes ADLParser and Archetype. Essentially, you create a new ADLParser object passing as a parameter a standard file object pointing to your ADL file and then from the parser you can obtain an Archetype object using the parse() member function. //For a (minimal) example File fd; ADLParser theParser; Archetype MyArchetype; fd = new File(openEHR-EHR-OBSERVATION.blood_pressure.v1.adl); theParser = new ADLParser(fd); MyArchetype = theParser.parse(); //-- // It omits some exception handling but this is the main idea You can now traverse the archetype structure implied by your .adl file using the functions of Archetype such as getAdlVersion(), getConceptName(), getChildren() and others. You could also use the Clinical Knowledge Manager (http://openehr.org/knowledge/) to browse archetypes of interest and download them in XML (rather than ADL). From there you could possibly process the XML to recover anything you want (concepts, terms, labels etc). The code from the opereffa project (http://opereffa.chime.ucl.ac.uk/introduction.jsf) might also be helpful for you, depending on what exactly you are trying to do (Web app in Java, deployed over Tomcat). That one is very detailed in that it includes all the necessary (and extensive) work that is required to handle Archetype(able) information through the current reference implementation and the Data Access Objects mechanism. If my memory is not failing me, it also includes an actual user interface generator so that forms accepting data are constructed through the archetypes. I hope this helps. All the best Athanasios Anastasiou On 26/01/2012 17:43, M?rcio Costa wrote: Hello guys, i'm trying to build a app using arquetypes and i need to read the ADL to build my interface. where i can get some examples how reading ADL 1.5? Is there some API to do that? thanks in advance, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com mailto:mdckoury at gmail.com mdckoury at gmail.com ___ openEHR-technical mailing listopenEHR-technical at openehr.orghttp://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- [image: Ocean Informatics] *Thomas Beale Chief Technology Officer, Ocean Informaticshttp://www.oceaninformatics.com/ * Chair Architectural Review Board, *open*EHR Foundationhttp://www.openehr.org/ Honorary Research Fellow, University College Londonhttp://www.chime.ucl.ac.uk/ Chartered IT Professional Fellow, BCS, British Computer Societyhttp://www.bcs.org.uk/ Health IT blog http://www.wolandscat.net/ * * ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/b4beae60/attachment.html
ADL reading
Excelent Pablo! I will study the class that you developed. Thanks, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 pablo pazos pazospablo at hotmail.com Hi M?rcio, As Ian mentioned, we have developed an EHR tool based on openEHR. The EHRGen has a component to load and cache archetypes on memory, that has the code Athanasios mentioned, you can see it here: http://code.google.com/p/open-ehr-gen-framework/source/browse/trunk/open-ehr-gen/src/groovy/archetype_repository/ArchetypeManager.groovy See method getArchetype(archetypId). We use the Java Ref Impl to parse ADL files. Hope that helps. -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos http://twitter.com/ppazos From: Ian.McNicoll at oceaninformatics.com Date: Thu, 26 Jan 2012 18:44:38 + Subject: Re: ADL reading To: openehr-technical at openehr.org Hi Marciio, You should also look at http://code.google.com/p/open-ehr-gen-framework/ The author Pablo Pazos is on this list and will no doubt have how own suggestions. Do not despair - openEHR confusion is a normal pre-requisite to eventual enlightenment :-) ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/2a650b88/attachment.html
ADL reading
Greetings, You may find this one helpful: http://serefarikan.com/2010/10/18/openehr-for-practical-people/ Warning in advance: I moved this from my old server to wordpress and it has some garbage, diagrams are missing etc. It may not be accurate enough too. So why do I even bother to give the link? It would still help with the basics. Pablo's work is probably in better shape compared to Opereffa, (I'll re-write all of it from scratch in the next month or so) so Pablo's work may help you better as a starting point. Also check out Shinji's recent posts; he recently released a big update to his implementation in Ruby. Don't panic. openEHR is a great piece of work, but it will take time to digest, so don't feel down if you struggle at first. As you can see, it has a good community. 2012/1/26 M?rcio Costa mdckoury at gmail.com Excelent Pablo! I will study the class that you developed. Thanks, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 pablo pazos pazospablo at hotmail.com Hi M?rcio, As Ian mentioned, we have developed an EHR tool based on openEHR. The EHRGen has a component to load and cache archetypes on memory, that has the code Athanasios mentioned, you can see it here: http://code.google.com/p/open-ehr-gen-framework/source/browse/trunk/open-ehr-gen/src/groovy/archetype_repository/ArchetypeManager.groovy See method getArchetype(archetypId). We use the Java Ref Impl to parse ADL files. Hope that helps. -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos http://twitter.com/ppazos From: Ian.McNicoll at oceaninformatics.com Date: Thu, 26 Jan 2012 18:44:38 + Subject: Re: ADL reading To: openehr-technical at openehr.org Hi Marciio, You should also look at http://code.google.com/p/open-ehr-gen-framework/ The author Pablo Pazos is on this list and will no doubt have how own suggestions. Do not despair - openEHR confusion is a normal pre-requisite to eventual enlightenment :-) ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/7fc30535/attachment.html
ADL reading
Hello Seref, I'm really impressed with the activity and dynamism of this community. OpenEHR is a great work, and also need a great time to digest :) Thank you for help :) Best Regards, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 Seref Arikan serefarikan at kurumsalteknoloji.com Greetings, You may find this one helpful: http://serefarikan.com/2010/10/18/openehr-for-practical-people/ Warning in advance: I moved this from my old server to wordpress and it has some garbage, diagrams are missing etc. It may not be accurate enough too. So why do I even bother to give the link? It would still help with the basics. Pablo's work is probably in better shape compared to Opereffa, (I'll re-write all of it from scratch in the next month or so) so Pablo's work may help you better as a starting point. Also check out Shinji's recent posts; he recently released a big update to his implementation in Ruby. Don't panic. openEHR is a great piece of work, but it will take time to digest, so don't feel down if you struggle at first. As you can see, it has a good community. 2012/1/26 M?rcio Costa mdckoury at gmail.com Excelent Pablo! I will study the class that you developed. Thanks, *M?rcio Costa* B.Sc. in Computer Science @ Cin/UFPE M.Sc. Candidate in Computer Science @ CIn/UFPE MSN: mdckoury at gmail.com 2012/1/26 pablo pazos pazospablo at hotmail.com Hi M?rcio, As Ian mentioned, we have developed an EHR tool based on openEHR. The EHRGen has a component to load and cache archetypes on memory, that has the code Athanasios mentioned, you can see it here: http://code.google.com/p/open-ehr-gen-framework/source/browse/trunk/open-ehr-gen/src/groovy/archetype_repository/ArchetypeManager.groovy See method getArchetype(archetypId). We use the Java Ref Impl to parse ADL files. Hope that helps. -- Kind regards, Ing. Pablo Pazos Guti?rrez LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez Blog: http://informatica-medica.blogspot.com/ Twitter: http://twitter.com/ppazos http://twitter.com/ppazos From: Ian.McNicoll at oceaninformatics.com Date: Thu, 26 Jan 2012 18:44:38 + Subject: Re: ADL reading To: openehr-technical at openehr.org Hi Marciio, You should also look at http://code.google.com/p/open-ehr-gen-framework/ The author Pablo Pazos is on this list and will no doubt have how own suggestions. Do not despair - openEHR confusion is a normal pre-requisite to eventual enlightenment :-) ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical ___ openEHR-technical mailing list openEHR-technical at openehr.org http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical -- next part -- An HTML attachment was scrubbed... URL: http://lists.openehr.org/mailman/private/openehr-technical_lists.openehr.org/attachments/20120126/9ecd5f2f/attachment.html
