Hello community,
here is the log from the commit of package python-scikit-image for
openSUSE:Leap:15.2 checked in at 2020-05-21 12:57:37
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Leap:15.2/python-scikit-image (Old)
and /work/SRC/openSUSE:Leap:15.2/.python-scikit-image.new.2738 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-scikit-image"
Thu May 21 12:57:37 2020 rev:11 rq:805765 version:0.16.2
Changes:
--------
---
/work/SRC/openSUSE:Leap:15.2/python-scikit-image/python-scikit-image.changes
2020-01-15 15:52:49.943576892 +0100
+++
/work/SRC/openSUSE:Leap:15.2/.python-scikit-image.new.2738/python-scikit-image.changes
2020-05-21 12:57:38.298572785 +0200
@@ -1,0 +2,757 @@
+Tue May 12 10:19:23 UTC 2020 - Tomáš Chvátal <tchva...@suse.com>
+
+- We need at least pytest 4.x series
+
+-------------------------------------------------------------------
+Fri Jan 17 12:52:19 UTC 2020 - Tomáš Chvátal <tchva...@suse.com>
+
+- Skip 2 failing tests on 32bit
+- Do not buildrequire nose
+
+-------------------------------------------------------------------
+Wed Dec 4 09:11:03 UTC 2019 - Tomáš Chvátal <tchva...@suse.com>
+
+- Use xdist to speed up the testing that takes bit too much time
+
+-------------------------------------------------------------------
+Sat Nov 9 14:58:21 UTC 2019 - Arun Persaud <a...@gmx.de>
+
+- specfile:
+ * remove two patched (included upstream):
+ - fix_numpy_1_17.patch
+ - fix_numpy_matrix_warning_test.patch
+ * add test requirement imageio
+
+- update to version 0.16.2 (bsc#1157707):
+ * Bug fixes
+ + Migrate to networkx 2.x (#4236, #4237)
+ + Sync required numpy and dask to runtime versions (#4233, #4239)
+ + Fix wrong argument parsing in structural_similarity (#4246,
+ #4247)
+ + Fix active contour gallery example after change to rc
+ coordinates (#4257, #4262)
+
+- changes from version 0.16.1:
+ * New Features
+ + New `skimage.evaluate` module containing simple metrics (mse,
+ nrme, psd) and segmentation metrics (adapted rand error,
+ variation of information) (#4025)
+ + n-dimensional TV-L1 optical flow algorithm for registration --
+ `skimage.registration.optical_flow_tvl1` (#3983)
+ + Draw a line in an n-dimensional array -- `skimage.draw.line_nd`
+ (#2043)
+ + 2D Farid & Simoncelli edge filters - `skimage.filters.farid`,
+ `skimage.filters.farid_h`, and `skimage.filters.farid_v` (#3775)
+ + 2D majority voting filter assigning to each pixel the most
+ commonly occurring value within its neighborhood --
+ `skimage.filters.majority` (#3836, #3839)
+ + Multi-level threshold "multi-Otsu" method, a thresholding
+ algorithm used to separate the pixels of an input image into
+ several classes by maximizing the variances between classes --
+ `skimage.filters.threshold_multiotsu` (#3872, #4174)
+ + New example data -- `skimage.data.shepp_logan_phantom`,
+ `skimage.data.colorwheel`, `skimage.data.brick`,
+ `skimage.data.grass`, `skimage.data.roughwall`,
+ `skimage.data.cell` (#3958, #3966)
+ + Compute and format image region properties as a table
+ --.measure.regionprops_table` (#3959)
+ + Convert a polygon into a mask -- `skimage.draw.poly2mask`
+ (#3971, #3977)
+ + Visual image comparison helper `skimage.util.compare_images`,
+ that returns an image showing the difference between two input
+ images (#4089)
+ + `skimage.transform.warp_polar` to remap image into polar or
+ log-polar coordinates. (#4097)
+ * Improvements
+ + RANSAC: new option to set initial samples selected for
+ initialization (#2992)
+ + Better repr and str for `skimage.transform.ProjectiveTransform`
+ (#3525, #3967)
+ + Better error messages and data type stability to
+ `skimage.segmentation.relabel_sequential` (#3740)
+ + Improved compatibility with dask arrays in some image
+ thresholding methods (#3823)
+ + `skimage.io.ImageCollection` can now receive lists of patterns
+ (#3928)
+ + Speed up `skimage.feature.peak_local_max` (#3984)
+ + Better error message when incorrect value for keyword argument
+ `kind` in.color.label2rgb` (#4055)
+ + All functions from `skimage.drawing` now supports multi-channel
+ 2D images (#4134)
+ * API Changes
+ + Deprecated subpackage "skimage.novice" has been removed.
+ + Default value of "multichannel" parameters has been set to False
+ in `skimage.transform.rescale`,
+ `skimage.transform.pyramid_reduce`,
+ `skimage.transform.pyramid_laplacian`,.transform.pyramid_gaussian`,
+ and `skimage.transform.pyramid_expand`. Guessing is no longer
+ performed for 3D.
+ + Deprecated argument "visualise" has been removed
+ from.feature.hog`. Use "visualize" instead.¨
+ + `skimage.transform.seam_carve` has been completely removed from
+ the library due to licensing restrictions.
+ + Parameter "as_grey" has been removed from `skimage.data.load`
+ and `skimage.io.imread`. Use "as_gray" instead.
+ + Parameter "min_size" has been removed from
+ `skimage.morphology.remove_small_holes`. Use "area_threshold"
+ instead.
+ + Deprecated "correct_mesh_orientation" in `skimage.measure` has
+ been removed.
+ + `skimage.measure._regionprops` has been completely switched to
+ using-column coordinates. Old x-y interface is not longer
+ available.
+ + Default value of "behavior" parameter has been set to "ndimage"
+ in `skimage.filters.median`.
+ + Parameter "flatten" in `skimage.io.imread` has been removed in
+ favor of "as_gray".
+ + Parameters "Hxx, Hxy, Hyy" have been removed from
+ `skimage.feature.corner.hessian_matrix_eigvals` in favor of
+ "H_elems".
+ + Default value of "order" parameter has been set to "rc" in
+ `skimage.feature.hessian_matrix`.
+ + "skimage.util.img_as_*" functions no longer raise precision
+ and/or loss warnings.
+ * Bugfixes
+ + Corrected error with scales attribute in ORB.detect_and_extract
+ (#2835) The scales attribute wasn't taking into account the
+ mask, and thus was using an incorrect array size.
+ + Correct for bias in Inverse Randon Transform
+ (`skimage.transform.irandon`) (#3067) Fixed by using the Ramp
+ filter equation in the spatial domain as described in the
+ reference
+ + Fix a rounding issue that caused a rotated image to have a
+ different size than the input (`skimage.transform.rotate`)
+ (#3173)
+ + RANSAC uses random subsets of the original data and not
+ bootstraps. (#3901, #3915)
+ + Canny now produces the same output regardless of dtype (#3919)
+ + Geometry Transforms: avoid division by zero & some degenerate
+ cases (#3926)
+ + Fixed float32 support in denoise_bilateral and
+ denoise_tv_bregman (#3936)
+ + Fixed computation of Meijering filter and avoid
+ ZeroDivisionError (#3957)
+ + Fixed `skimage.filters.threshold_li` to prevent being stuck on
+ stationnary points, and thus at local minima or maxima (#3966)
+ + Edited `skimage.exposure.rescale_intensity` to return input
+ image instead of nans when all 0 (#4015)
+ + Fixed `skimage.morphology.medial_axis`. A wrong indentation in
+ Cython caused the function to not behave as intended. (#4060)
+ + Fixed `skimage.restoration.denoise_bilateral` by correcting the
+ padding in the gaussian filter(#4080)
+ + Fixed `skimage.measure.find_contours` when input image contains
+ NaN. Contours interesting NaN will be left open (#4150)
+ + Fixed `skimage.feature.blob_log` and `skimage.feature.blob_dog`
+ for 3D images and anisotropic data (#4162)
+ + Fixed `skimage.exposure.adjust_gamma`,
+ `skimage.exposure.adjust_log`, and
+ `skimage.exposure.adjust_sigmoid` such that when provided with a
+ 1 by 1 ndarray, it returns 1 by 1 ndarrays and not single number
+ floats (#4169)
+ * Deprecations
+ + Parameter "neighbors" in `skimage.measure.convex_hull_object`
+ has been deprecated in favor of "connectivity" and will be
+ removed in version 0.18.0.
+ + The following functions are deprecated in favor of the
+ `skimage.metrics` module (#4025):
+ - `skimage.measure.compare_mse`
+ - `skimage.measure.compare_nrmse`
+ - `skimage.measure.compare_psnr`
+ - `skimage.measure.compare_ssim`
+ + The function `skimage.color.guess_spatial_dimensions` is
+ deprecated and will be removed in 0.18 (#4031)
+ + The argument "bc" in `skimage.segmentation.active_contour` is
+ deprecated.
+ + The function `skimage.data.load` is deprecated and will be
+ removed in 0.18 (#4061)
+ + The function `skimage.transform.match_histogram` is deprecated
+ in favor of `skimage.exposure.match_histogram` (#4107)
+ + The parameter "neighbors" of
+ `skimage.morphology.convex_hull_object` is deprecated.
+ + The `skimage.transform.randon_tranform` function will convert
+ input image of integer type to float by default in 0.18. To
+ preserve current behaviour, set the new argument
+ "preserve_range" to True. (#4131)
+ * For further documentation improvements and misc pull request see
+
https://github.com/scikit-image/scikit-image/blob/v0.16.x/doc/release/release_0.16.rst
+
+-------------------------------------------------------------------
+Wed Jul 31 20:59:24 UTC 2019 - Todd R <toddrme2...@gmail.com>
+
+- Add fix_numpy_1_17.patch
+ Fixes building with numpy 1.17
+ From gh#scikit-image/scikit-image#3992
+
+-------------------------------------------------------------------
+Sat Jul 27 18:12:14 UTC 2019 - Bernhard Wiedemann <bwiedem...@suse.com>
+
+- do not write unreproducible test_random_walker.cpython-37-PYTEST.pyc
+ files (boo#1062303)
+
+-------------------------------------------------------------------
+Tue Jul 23 17:22:19 UTC 2019 - Todd R <toddrme2...@gmail.com>
+
+ + New Features
+ * N-dimensional flood fill, with tolerance
+ * Attribute operators
+ * Extension of register_translation to enable subpixel precision in 3D and
++++ 560 more lines (skipped)
++++ between
/work/SRC/openSUSE:Leap:15.2/python-scikit-image/python-scikit-image.changes
++++ and
/work/SRC/openSUSE:Leap:15.2/.python-scikit-image.new.2738/python-scikit-image.changes
Old:
----
scikit-image-0.13.1.tar.gz
New:
----
scikit-image-0.16.2.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-scikit-image.spec ++++++
--- /var/tmp/diff_new_pack.RBKRhy/_old 2020-05-21 12:57:39.946576375 +0200
+++ /var/tmp/diff_new_pack.RBKRhy/_new 2020-05-21 12:57:39.946576375 +0200
@@ -1,7 +1,7 @@
#
# spec file for package python-scikit-image
#
-# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2020 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -12,24 +12,20 @@
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
-# Please submit bugfixes or comments via http://bugs.opensuse.org/
+# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
-# Test discovery issues
-%bcond_with tests
-
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
-%define oldpython python
+%define skip_python2 1
Name: python-scikit-image
-Version: 0.13.1
+Version: 0.16.2
Release: 0
Summary: Collection of algorithms for image processing in Python
License: BSD-3-Clause
-Group: Productivity/Scientific/Other
-Url: http://scikit-image.org/
+URL: https://scikit-image.org/
Source0:
https://files.pythonhosted.org/packages/source/s/scikit-image/scikit-image-%{version}.tar.gz
-BuildRequires: %{python_module Cython >= 0.23}
+BuildRequires: %{python_module Cython >= 0.23.4}
BuildRequires: %{python_module devel}
BuildRequires: %{python_module numpy-devel >= 1.11}
BuildRequires: %{python_module scipy >= 0.17}
@@ -37,16 +33,8 @@
BuildRequires: %{python_module six >= 1.7.3}
BuildRequires: fdupes
BuildRequires: freeimage-devel
+BuildRequires: gcc-c++
BuildRequires: python-rpm-macros
-%if %{with tests}
-BuildRequires: %{python_module nose}
-BuildRequires: %{python_module pytest}
-# Runtime dependencies
-BuildRequires: %{python_module Pillow >= 2.1.0}
-BuildRequires: %{python_module PyWavelets >= 0.4.0}
-BuildRequires: %{python_module matplotlib >= 1.3.1}
-BuildRequires: %{python_module networkx >= 1.8}
-%endif
Requires: python-Pillow >= 2.1.0
Requires: python-PyWavelets >= 0.4.0
Requires: python-matplotlib >= 1.3.1
@@ -54,19 +42,24 @@
Requires: python-numpy >= 1.11
Requires: python-scipy >= 0.17
Requires: python-six >= 1.7.3
-Recommends: python-pyamg
+Requires(post): update-alternatives
+Requires(preun): update-alternatives
Recommends: python-SimpleITK
Recommends: python-astropy
Recommends: python-dask-array >= 0.5.0
Recommends: python-imread
+Recommends: python-pyamg
Recommends: python-qt4
-%ifpython2
-Provides: %{oldpython}-scikits-image = %{version}
-Obsoletes: %{oldpython}-scikits-image < %{version}
-%endif
-Requires(post): update-alternatives
-Requires(preun): update-alternatives
-BuildRoot: %{_tmppath}/%{name}-%{version}-build
+# SECTION test requirements
+BuildRequires: %{python_module Pillow >= 2.1.0}
+BuildRequires: %{python_module PyWavelets >= 0.4.0}
+BuildRequires: %{python_module imageio}
+BuildRequires: %{python_module matplotlib >= 1.3.1}
+BuildRequires: %{python_module networkx >= 1.8}
+BuildRequires: %{python_module pytest >= 4.0}
+BuildRequires: %{python_module pytest-localserver}
+BuildRequires: %{python_module pytest-xdist}
+# /SECTION
%python_subpackages
%description
@@ -75,6 +68,7 @@
%prep
%setup -q -n scikit-image-%{version}
+%autopatch -p1
%build
%python_build
@@ -91,20 +85,17 @@
%preun
%python_uninstall_alternative skivi
-%if %{with tests}
%check
-mkdir tester
-pushd tester
-%{python_expand export PYTHONPATH=%{buildroot}%{$python_sitearch}
-py.test-%{$python_bin_suffix} -v skimage
-}
-popd
-rm -r tester
-%endif
+export PYTHONDONTWRITEBYTECODE=1 # do not write unreproducible
test_random_walker.cpython-37-PYTEST.pyc files (boo#1062303)
+mv skimage skimage_temp
+# test_wrap_around - fails randomly
https://github.com/scikit-image/scikit-image/issues/3237
+# test_structural_similarity_dtype - also fails randomly on 32bit
+%pytest_arch -v %{buildroot}%{$python_sitearch}/skimage -n auto -k 'not
(test_wrap_around or test_structural_similarity_dtype)'
+mv skimage_temp skimage
%files %{python_files}
-%defattr(-,root,root)
-%doc CONTRIBUTORS.txt LICENSE.txt TASKS.txt TODO.txt
+%license LICENSE.txt
+%doc CONTRIBUTORS.txt TODO.txt
%python_alternative %{_bindir}/skivi
%{python_sitearch}/skimage/
%{python_sitearch}/scikit_image-%{version}-py*.egg-info
++++++ scikit-image-0.13.1.tar.gz -> scikit-image-0.16.2.tar.gz ++++++
/work/SRC/openSUSE:Leap:15.2/python-scikit-image/scikit-image-0.13.1.tar.gz
/work/SRC/openSUSE:Leap:15.2/.python-scikit-image.new.2738/scikit-image-0.16.2.tar.gz
differ: char 5, line 1
