commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2020-09-15 16:25:02
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.4249 (New)
Package is "hdf5"
Tue Sep 15 16:25:02 2020 rev:69 rq:833710 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2020-07-21
15:51:03.120344495 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.4249/hdf5.changes 2020-09-15
16:25:47.310453084 +0200
@@ -1,0 +2,5 @@
+Thu Jul 23 16:33:58 UTC 2020 - Egbert Eich
+
+- Add build support for gcc10 to HPC build (bsc#1174439).
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.MdBUaL/_old 2020-09-15 16:25:48.406454133 +0200
+++ /var/tmp/diff_new_pack.MdBUaL/_new 2020-09-15 16:25:48.410454137 +0200
@@ -310,6 +310,63 @@
%global mpi_flavor mpich
%endif
+%if "%{flavor}" == "gnu10-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 10
+%undefine mpi_flavor
+%endif
+
+%if "%{flavor}" == "gnu10-openmpi-hpc"
+%{?DisOMPI1}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 10
+%global mpi_flavor openmpi
+%define mpi_vers 1
+%endif
+
+%if "%{flavor}" == "gnu10-openmpi2-hpc"
+%{?DisOMPI2}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 10
+%global mpi_flavor openmpi
+%define mpi_vers 2
+%endif
+
+%if "%{flavor}" == "gnu10-openmpi3-hpc"
+%{?DisOMPI3}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 10
+%global mpi_flavor openmpi
+%define mpi_vers 3
+%endif
+
+%if "%{flavor}" == "gnu10-openmpi4-hpc"
+%{?DisOMPI4}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 10
+%global mpi_flavor openmpi
+%define mpi_vers 4
+%endif
+
+%if "%{flavor}" == "gnu10-mvapich2-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 10
+%global mpi_flavor mvapich2
+%endif
+
+%if "%{flavor}" == "gnu10-mpich-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 10
+%global mpi_flavor mpich
+%endif
+
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
%{?with_hpc:%{!?compiler_family:%global compiler_family gnu}}
%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2020-07-21 15:49:11
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.3592 (New)
Package is "hdf5"
Tue Jul 21 15:49:11 2020 rev:68 rq:822016 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2020-07-03
00:15:27.136670429 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.3592/hdf5.changes 2020-07-21
15:51:03.120344495 +0200
@@ -1,0 +2,6 @@
+Mon Jul 20 14:48:42 UTC 2020 - Egbert Eich
+
+- Add missing openmpi4 flavors.
+- Enable build of non-HPC flavors for all non-HPC builds.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.KOtIu9/_old 2020-07-21 15:51:05.536347432 +0200
+++ /var/tmp/diff_new_pack.KOtIu9/_new 2020-07-21 15:51:05.540347437 +0200
@@ -180,6 +180,15 @@
%define mpi_vers 3
%endif
+%if "%{flavor}" == "gnu7-openmpi4-hpc"
+%{?DisOMPI4}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 7
+%global mpi_flavor openmpi
+%define mpi_vers 4
+%endif
+
%if "%{flavor}" == "gnu7-mpich-hpc"
%bcond_without hpc
%define compiler_family gnu
@@ -221,6 +230,15 @@
%define mpi_vers 3
%endif
+%if "%{flavor}" == "gnu8-openmpi4-hpc"
+%{?DisOMPI4}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 8
+%global mpi_flavor openmpi
+%define mpi_vers 4
+%endif
+
%if "%{flavor}" == "gnu8-mvapich2-hpc"
%bcond_without hpc
%define compiler_family gnu
@@ -269,6 +287,15 @@
%define mpi_vers 3
%endif
+%if "%{flavor}" == "gnu9-openmpi4-hpc"
+%{?DisOMPI4}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 9
+%global mpi_flavor openmpi
+%define mpi_vers 4
+%endif
+
%if "%{flavor}" == "gnu9-mvapich2-hpc"
%bcond_without hpc
%define compiler_family gnu
@@ -283,11 +310,6 @@
%global mpi_flavor mpich
%endif
-# Don't build non-HPC on SLE
-%if !0%{?is_opensuse} && !0%{?with_hpc:1}
-ExclusiveArch: do_not_build
-%endif
-
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
%{?with_hpc:%{!?compiler_family:%global compiler_family gnu}}
%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2020-07-03 00:11:44
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.3060 (New)
Package is "hdf5"
Fri Jul 3 00:11:44 2020 rev:67 rq:818282 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2020-04-18
00:33:52.474480222 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.3060/hdf5.changes 2020-07-03
00:15:27.136670429 +0200
@@ -1,0 +2,5 @@
+Wed Jun 24 07:32:58 UTC 2020 - Alin M Elena
+
+- add openmpi4 packages to build and disable build for leap
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.s46rDc/_old 2020-07-03 00:15:28.204673971 +0200
+++ /var/tmp/diff_new_pack.s46rDc/_new 2020-07-03 00:15:28.208673984 +0200
@@ -25,6 +25,10 @@
%define DisOMPI3 ExclusiveArch: do_not_build
%endif
+%if 0%{?sle_version:1} && 0%{?sle_version} < 150300
+%define DisOMPI4 ExclusiveArch: do_not_build
+%endif
+
# Disable until resource issue is resolved.
%bcond_with check
@@ -67,6 +71,13 @@
%bcond_with hpc
%endif
+%if "%{flavor}" == "openmpi4"
+%{?DisOMPI4}
+%global mpi_flavor openmpi
+%define mpi_vers 4
+%bcond_with hpc
+%endif
+
%if "%{flavor}" == "mvapich2"
%global mpi_flavor %{flavor}
%bcond_with hpc
@@ -112,6 +123,15 @@
%define mpi_vers 3
%endif
+%if "%{flavor}" == "gnu-openmpi4-hpc"
+%{?DisOMPI4}
+%bcond_without hpc
+%define compiler_family gnu
+%undefine c_f_ver
+%global mpi_flavor openmpi
+%define mpi_vers 4
+%endif
+
%if "%{flavor}" == "gnu-mpich-hpc"
%bcond_without hpc
%define compiler_family gnu
++ _multibuild ++
--- /var/tmp/diff_new_pack.s46rDc/_old 2020-07-03 00:15:28.248674117 +0200
+++ /var/tmp/diff_new_pack.s46rDc/_new 2020-07-03 00:15:28.248674117 +0200
@@ -3,10 +3,12 @@
openmpi1
openmpi2
openmpi3
+ openmpi4
mvapich2
gnu-openmpi-hpc
gnu-openmpi2-hpc
gnu-openmpi3-hpc
+ gnu-openmpi4-hpc
gnu-mvapich2-hpc
gnu-mpich-hpc
gnu-hpc
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2020-04-18 00:33:14
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.2738 (New)
Package is "hdf5"
Sat Apr 18 00:33:14 2020 rev:66 rq:794967 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2020-04-02
17:44:11.533445030 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.2738/hdf5.changes 2020-04-18
00:33:52.474480222 +0200
@@ -1,0 +2,5 @@
+Fri Apr 17 14:54:44 UTC 2020 - Egbert Eich
+
+- Fix .so number in baselibs.conf for libhdf5_fortran libs (boo#1169793).
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.pP0NVI/_old 2020-04-18 00:33:53.414482168 +0200
+++ /var/tmp/diff_new_pack.pP0NVI/_new 2020-04-18 00:33:53.418482177 +0200
@@ -588,7 +588,7 @@
cat > %{_sourcedir}/baselibs.conf <
requires "libhdf5-%{sonum}%{?my_suffix}- = "
requires "libhdf5_hl%{sonum_HL}%{?my_suffix}- = "
- requires "libhdf5_fortran%{sonum_HL_F}%{?my_suffix}- =
"
+ requires "libhdf5_fortran%{sonum_F}%{?my_suffix}- = "
requires "libhdf5hl_fortran%{sonum_HL_F}%{?my_suffix}- =
"
requires "libhdf5_cpp%{sonum_CXX}%{?my_suffix}- = "
requires "libhdf5_hl_cpp%{sonum_HL_CXX}%{?my_suffix}- =
"
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2020-04-02 17:44:10
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.3248 (New)
Package is "hdf5"
Thu Apr 2 17:44:10 2020 rev:65 rq:790802 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2020-01-20
22:55:46.551351158 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.3248/hdf5.changes 2020-04-02
17:44:11.533445030 +0200
@@ -1,0 +2,5 @@
+Thu Apr 2 07:49:26 UTC 2020 - Egbert Eich
+
+- Fix library link flags on pkg-config file for HPC builds (boo#1134298).
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.om0qPt/_old 2020-04-02 17:44:12.269445919 +0200
+++ /var/tmp/diff_new_pack.om0qPt/_new 2020-04-02 17:44:12.269445919 +0200
@@ -714,12 +714,12 @@
%fdupes -s %{buildroot}/%{_datadir}
%if %{with hpc}
-%{hpc_write_pkgconfig -n hdf5 -l libhdf5}
-%{hpc_write_pkgconfig -n hdf5_hl -l libhdf5_hl}
-%{hpc_write_pkgconfig -n hdf5_fortran -l libhdf5_fortran}
-%{hpc_write_pkgconfig -n hdf5_hl_fortran -l libhdfhl_fortran}
-%{hpc_write_pkgconfig -n hdf5_cpp -l libhdf5_cpp}
-%{hpc_write_pkgconfig -n hdf5_hl_cpp -l libhdf5_hl_cpp}
+%{hpc_write_pkgconfig -n hdf5 -l hdf5}
+%{hpc_write_pkgconfig -n hdf5_hl -l hdf5_hl}
+%{hpc_write_pkgconfig -n hdf5_fortran -l hdf5_fortran}
+%{hpc_write_pkgconfig -n hdf5_hl_fortran -l hdf5hl_fortran}
+%{hpc_write_pkgconfig -n hdf5_cpp -l hdf5_cpp}
+%{hpc_write_pkgconfig -n hdf5_hl_cpp -l hdf5_hl_cpp}
%hpc_write_modules_files
#%%Module1.0#
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2020-01-20 22:55:35
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.26092 (New)
Package is "hdf5"
Mon Jan 20 22:55:35 2020 rev:64 rq:765742 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-12-11
12:13:49.704533414 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.26092/hdf5.changes 2020-01-20
22:55:46.551351158 +0100
@@ -1,0 +2,15 @@
+Mon Jan 20 00:47:04 UTC 2020 - Stefan Brüns
+
+- Remove bogus undefines of suffix and mpi_flavor. suffix is the
+ name of an RPM built-in (like expand or echo), and since RPM 4.15
+ trying to alter a built-in is an error. Fixes built of serial
+ flavor on Tumbleweed. See https://rpm.org/user_doc/macros.html
+
+---
+Tue Dec 10 16:30:03 UTC 2019 - Stefan Brüns
+
+- Add compat provides for renamed hdf5-openmpi{,-devel} package,
+ see https://en.opensuse.org/openSUSE:Package_dependencies
+- Fix openmpi1 package naming for SLE/Leap <= 15.1
+
+---
@@ -4 +19 @@
-- Add support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8604).
+- Add HPC support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8604).
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.9wrZzd/_old 2020-01-20 22:55:47.959351700 +0100
+++ /var/tmp/diff_new_pack.9wrZzd/_new 2020-01-20 22:55:47.963351701 +0100
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2019 SUSE LLC
+# Copyright (c) 2020 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -43,8 +43,6 @@
%endif
%if "%{flavor}" == "serial"
-%undefine suffix
-%undefine mpi_flavor
%bcond_with hpc
%endif
@@ -275,7 +273,11 @@
%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
# For compatibility package names
+%if "%{flavor}" == "openmpi1" && 0%{?suse_version} <= 1500
+%define mpi_ext %{nil}
+%else
%define mpi_ext %{?mpi_vers}
+%endif
%if %{with hpc}
%{hpc_init -c %compiler_family %{?with_mpi:-m %mpi_flavor} %{?c_f_ver:-v
%{c_f_ver}} %{?mpi_vers:-V %{mpi_vers}} %{?ext:-e %{ext}}}
@@ -377,6 +379,10 @@
%endif
%endif # ?hpc
BuildRoot: %{_tmppath}/%{name}-%{version}-build
+%if "%{flavor}" == "openmpi1" && 0%{?suse_version} <= 1500
+Provides: %{pname}-openmpi = %{version}-%{release}
+Obsoletes: %{pname}-openmpi < %{version}-%{release}
+%endif
%description
HDF5 is a data model, library, and file format for storing and
@@ -512,6 +518,10 @@
Requires: %{libname -l _hl -s %{sonum_HL}} = %{version}
Requires: %{libname -l hl_fortran -s %{sonum_HL_F}} = %{version}
%{?with_hpc:%hpc_requires_devel}
+%if "%{flavor}" == "openmpi1" && 0%{?suse_version} <= 1500
+Provides: %{pname}-openmpi-devel = %{version}-%{release}
+Obsoletes: %{pname}-openmpi-devel < %{version}-%{release}
+%endif
%description devel
HDF5 is a data model, library, and file format for storing and
@@ -701,9 +711,7 @@
rm -rf %{buildroot}%{_prefix}/share/hdf5_examples
%endif
-%if 0%{?suse_version} >= 1110
%fdupes -s %{buildroot}/%{_datadir}
-%endif
%if %{with hpc}
%{hpc_write_pkgconfig -n hdf5 -l libhdf5}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-12-11 12:13:26
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.4691 (New)
Package is "hdf5"
Wed Dec 11 12:13:26 2019 rev:63 rq:755687 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-12-02
11:31:25.542557780 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.4691/hdf5.changes 2019-12-11
12:13:49.704533414 +0100
@@ -4 +4 @@
-- Add support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8609).
+- Add support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8604).
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.4lW9Hp/_old 2019-12-11 12:13:51.836532815 +0100
+++ /var/tmp/diff_new_pack.4lW9Hp/_new 2019-12-11 12:13:51.840532814 +0100
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2019 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -326,7 +326,7 @@
Summary:Command-line programs for the HDF5 scientific data format
License:BSD-3-Clause
Group: Productivity/Scientific/Other
-Url:https://www.hdfgroup.org/HDF5/
+URL:https://www.hdfgroup.org/HDF5/
Source0:
https://www.hdfgroup.org/ftp/HDF5/releases/%{pname}-%{short_ver}/%{pname}-%{src_ver}/src/%{pname}-%{src_ver}.tar.bz2
Source100: _multibuild
Source1000: update_so_version.sh
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-12-02 11:29:11
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.4691 (New)
Package is "hdf5"
Mon Dec 2 11:29:11 2019 rev:62 rq:752488 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-10-31
22:46:48.805960578 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.4691/hdf5.changes 2019-12-02
11:31:25.542557780 +0100
@@ -1,0 +2,11 @@
+Thu Nov 28 18:13:10 UTC 2019 - Egbert Eich
+
+- Add support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8609).
+
+---
+Thu Nov 28 15:54:19 UTC 2019 - Egbert Eich
+
+- Disable openmpi1 builds for SLE/Leap > 15.1.
+- Enable openmpi3 builds for Leap and SLE > 15.1 (jsc#SLE-7773).
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.HbGdJ7/_old 2019-12-02 11:31:26.754557219 +0100
+++ /var/tmp/diff_new_pack.HbGdJ7/_new 2019-12-02 11:31:26.758557217 +0100
@@ -18,13 +18,10 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%if 0%{?is_opensuse} || 0%{?is_backports}
-%undefine DisOMPI1
-%undefine DisOMPI2
-%undefine DisOMPI3
-%else
+%if 0%{?sle_version} >= 150200
%define DisOMPI1 ExclusiveArch: do_not_build
-%undefine DisOMPI2
+%endif
+%if !0%{?is_opensuse} && 0%{?sle_version:1} && 0%{?sle_version} < 150200
%define DisOMPI3 ExclusiveArch: do_not_build
%endif
@@ -140,6 +137,15 @@
%define mpi_vers 1
%endif
+%if "%{flavor}" == "gnu7-openmpi2-hpc"
+%{?DisOMPI2}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 7
+%global mpi_flavor openmpi
+%define mpi_vers 2
+%endif
+
%if "%{flavor}" == "gnu7-mvapich2-hpc"
%bcond_without hpc
%define compiler_family gnu
@@ -163,6 +169,102 @@
%global mpi_flavor mpich
%endif
+%if "%{flavor}" == "gnu8-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 8
+%undefine mpi_flavor
+%endif
+
+%if "%{flavor}" == "gnu8-openmpi-hpc"
+%{?DisOMPI1}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 8
+%global mpi_flavor openmpi
+%define mpi_vers 1
+%endif
+
+%if "%{flavor}" == "gnu8-openmpi2-hpc"
+%{?DisOMPI2}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 8
+%global mpi_flavor openmpi
+%define mpi_vers 2
+%endif
+
+%if "%{flavor}" == "gnu8-openmpi3-hpc"
+%{?DisOMPI3}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 8
+%global mpi_flavor openmpi
+%define mpi_vers 3
+%endif
+
+%if "%{flavor}" == "gnu8-mvapich2-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 8
+%global mpi_flavor mvapich2
+%endif
+
+%if "%{flavor}" == "gnu8-mpich-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 8
+%global mpi_flavor mpich
+%endif
+
+%if "%{flavor}" == "gnu9-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 9
+%undefine mpi_flavor
+%endif
+
+%if "%{flavor}" == "gnu9-openmpi-hpc"
+%{?DisOMPI1}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 9
+%global mpi_flavor openmpi
+%define mpi_vers 1
+%endif
+
+%if "%{flavor}" == "gnu9-openmpi2-hpc"
+%{?DisOMPI2}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 9
+%global mpi_flavor openmpi
+%define mpi_vers 2
+%endif
+
+%if "%{flavor}" == "gnu9-openmpi3-hpc"
+%{?DisOMPI3}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 9
+%global mpi_flavor openmpi
+%define mpi_vers 3
+%endif
+
+%if "%{flavor}" == "gnu9-mvapich2-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 9
+%global mpi_flavor mvapich2
+%endif
+
+%if "%{flavor}" == "gnu9-mpich-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 9
+%global mpi_flavor mpich
+%endif
+
# Don't build non-HPC on SLE
%if !0%{?is_opensuse} && !0%{?with_hpc:1}
ExclusiveArch: do_not_build
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-10-31 22:46:46
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.2990 (New)
Package is "hdf5"
Thu Oct 31 22:46:46 2019 rev:61 rq:744504 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-10-02
11:57:32.139240832 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.2990/hdf5.changes 2019-10-31
22:46:48.805960578 +0100
@@ -1,0 +2,5 @@
+Thu Oct 24 06:37:26 UTC 2019 - Nicolas Morey-Chaisemartin
+
+- openmpi has been renamed into openmpi1
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.UeiDRY/_old 2019-10-31 22:46:51.341963727 +0100
+++ /var/tmp/diff_new_pack.UeiDRY/_new 2019-10-31 22:46:51.345963733 +0100
@@ -51,7 +51,7 @@
%bcond_with hpc
%endif
-%if "%{flavor}" == "openmpi"
+%if "%{flavor}" == "openmpi1"
%{?DisOMPI1}
%global mpi_flavor openmpi
%define mpi_vers 1
@@ -173,9 +173,7 @@
%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
# For compatibility package names
-%if "%{mpi_flavor}" != "openmpi" || "%{mpi_vers}" != "1"
%define mpi_ext %{?mpi_vers}
-%endif
%if %{with hpc}
%{hpc_init -c %compiler_family %{?with_mpi:-m %mpi_flavor} %{?c_f_ver:-v
%{c_f_ver}} %{?mpi_vers:-V %{mpi_vers}} %{?ext:-e %{ext}}}
++ _multibuild ++
--- /var/tmp/diff_new_pack.UeiDRY/_old 2019-10-31 22:46:51.905964429 +0100
+++ /var/tmp/diff_new_pack.UeiDRY/_new 2019-10-31 22:46:51.905964429 +0100
@@ -1,6 +1,6 @@
serial
- openmpi
+ openmpi1
openmpi2
openmpi3
mvapich2
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2019-10-02 11:57:30 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new.2352 (New) Package is "hdf5" Wed Oct 2 11:57:30 2019 rev:60 rq:734021 version:1.10.5 Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-09-11 10:35:12.927299325 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new.2352/hdf5.changes 2019-10-02 11:57:32.139240832 +0200 @@ -15 +15 @@ -- Update to version 1.10.5: +- Update to version 1.10.5: (jsc#SLE-8501) Other differences: --
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-09-11 10:35:09
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.7948 (New)
Package is "hdf5"
Wed Sep 11 10:35:09 2019 rev:59 rq:729758 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-09-04
09:16:36.746927553 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.7948/hdf5.changes 2019-09-11
10:35:12.927299325 +0200
@@ -1,0 +2,5 @@
+Tue Sep 10 07:54:05 UTC 2019 - Ana Guerrero Lopez
+
+- Use -ffat-lto-objects to provide a proper static library.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.M0AD1D/_old 2019-09-11 10:35:13.959299026 +0200
+++ /var/tmp/diff_new_pack.M0AD1D/_new 2019-09-11 10:35:13.963299025 +0200
@@ -38,6 +38,7 @@
%define short_ver 1.10
%define src_ver %{version}
%define pname hdf5
+%global _lto_cflags %{_lto_cflags} -ffat-lto-objects
%if "%{flavor}" == ""
ExclusiveArch: do_not_build
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-09-04 09:15:33
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.7948 (New)
Package is "hdf5"
Wed Sep 4 09:15:33 2019 rev:58 rq:727974 version:1.10.5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-07-04
15:44:47.430258320 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.7948/hdf5.changes 2019-09-04
09:16:36.746927553 +0200
@@ -1,0 +2,27 @@
+Tue Sep 3 10:17:31 UTC 2019 - Ana Guerrero Lopez
+
+- Re-list hdf5-mpi.patch in the spec file for the sake of a avoiding
+ a script rejecting the package automatically.
+
+---
+Fri Aug 23 09:58:01 UTC 2019 - Ana Guerrero Lopez
+
+- Update to version 1.10.5:
+ *
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt
+- Bump fortran library soname, sonum_F from 100 to 102.
+- Adjust library installation path, use %hpc_prefix/lib64 in x86_64
+ and %hpc_libdir in all other cases
+- Patches refreshed:
+ * hdf5-LD_LIBRARY_PATH.patch
+ * hdf5-1.8.11-abort_unknown_host_config.patch
+ * PPC64LE-Fix-long-double-handling.patch
+ * hdf5-Remove-timestamps-from-binaries.patch
+ * Disable-phdf5-tests.patch
+- Patch disabled, upstream have changed the file that was being patched,
+ while it could be ported, it's unknown if this patch is still needed.
+ * hdf5-mpi.patch
+- Patch removed, merged upstream
+ * 0001-Fix-return-value-in-test_libver_bounds_open.patch
+
+
+---
Old:
0001-Fix-return-value-in-test_libver_bounds_open.patch
hdf5-1.10.4.tar.bz2
New:
hdf5-1.10.5.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.9MPA0r/_old 2019-09-04 09:16:37.782927409 +0200
+++ /var/tmp/diff_new_pack.9MPA0r/_new 2019-09-04 09:16:37.782927409 +0200
@@ -33,8 +33,8 @@
%define use_sz2 0
-%define vers 1.10.4
-%define _vers 1_10_4
+%define vers 1.10.5
+%define _vers 1_10_5
%define short_ver 1.10
%define src_ver %{version}
%define pname hdf5
@@ -181,7 +181,11 @@
%{?with_mpi:%global hpc_module_pname p%{pname}}
%define my_prefix %hpc_prefix
%define my_bindir %hpc_bindir
+ %ifarch x86_64
+ %define my_libdir %hpc_prefix/lib64
+ %else
%define my_libdir %hpc_libdir
+ %endif
%define my_incdir %hpc_includedir
%define package_name %{hpc_package_name %_vers}
%define libname(l:s:) lib%{pname}%{-l*}%{hpc_package_name_tail %{?_vers}}
@@ -210,7 +214,7 @@
# do not match the so numbers that are actually built.
%define sonum 103
%define sonum_CXX 103
-%define sonum_F 100
+%define sonum_F 102
%define sonum_HL 100
%define sonum_HL_CXX 100
%define sonum_HL_F 100
@@ -233,9 +237,9 @@
%endif
Patch5: PPC64LE-Fix-long-double-handling.patch
Patch6: hdf5-Remove-timestamps-from-binaries.patch
+# Could be ported but it's unknown if it's still needed
Patch7: hdf5-mpi.patch
Patch8: Disable-phdf5-tests.patch
-Patch9: 0001-Fix-return-value-in-test_libver_bounds_open.patch
BuildRequires: fdupes
%if 0%{?use_sz2}
BuildRequires: libsz2-devel
@@ -465,9 +469,8 @@
%endif
%patch5 -p1
%patch6 -p1
-%patch7 -p1
+# %%patch7 -p1
%patch8 -p1
-%patch9 -p1
%if %{without hpc}
# baselibs looks different for different flavors - generate it on the fly
++ Disable-phdf5-tests.patch ++
--- /var/tmp/diff_new_pack.9MPA0r/_old 2019-09-04 09:16:37.794927407 +0200
+++ /var/tmp/diff_new_pack.9MPA0r/_new 2019-09-04 09:16:37.794927407 +0200
@@ -8,32 +8,29 @@
Signed-off-by: Egbert Eich
Signed-off-by: Egbert Eich
---
- testpar/CMakeTests.cmake | 2 +-
- testpar/Makefile.am | 2 +-
- 2 files changed, 2 insertions(+), 2 deletions(-)
-diff --git a/testpar/CMakeTests.cmake b/testpar/CMakeTests.cmake
-index 87470f3..ce2f2e4 100644
a/testpar/CMakeTests.cmake
-+++ b/testpar/CMakeTests.cmake
-@@ -16,7 +16,7 @@
- ##
- ##
+Index: hdf5-1.10.5/testpar/CMakeTests.cmake
+===
+--- hdf5-1.10.5.orig/testpar/CMakeTests.cmake
hdf5-1.10.5/testpar/CMakeTests.cmake
+@@ -30,7 +30,7 @@ set (SKIP_testphdf5 "")
+ # set (SKIP_testphdf5 "${SKIP_testphdf5};-x;ecdsetw")
+ #endif ()
--add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC_EXECUTABLE}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS}
$ ${MPIEXEC_POSTFLAGS})
-+##add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC_EXECUTABLE}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-07-04 15:44:38
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.4615 (New)
Package is "hdf5"
Thu Jul 4 15:44:38 2019 rev:57 rq:713409 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-04-30
13:04:15.126034916 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new.4615/hdf5.changes 2019-07-04
15:44:47.430258320 +0200
@@ -1,0 +2,6 @@
+Thu Jul 4 11:45:55 UTC 2019 - Egbert Eich
+
+- Since build machine size issues do not seem to go way, make
+ the %check stage optional: enable with '--with check'.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.mbSHnR/_old 2019-07-04 15:44:48.418260510 +0200
+++ /var/tmp/diff_new_pack.mbSHnR/_new 2019-07-04 15:44:48.422260518 +0200
@@ -28,8 +28,9 @@
%define DisOMPI3 ExclusiveArch: do_not_build
%endif
-#
-%define _do_check 1
+# Disable until resource issue is resolved.
+%bcond_with check
+
%define use_sz2 0
%define vers 1.10.4
@@ -166,11 +167,6 @@
ExclusiveArch: do_not_build
%endif
-# Disable until resource issue is resolved.
-%if "%mpi_flavor" == "openmpi" && 0%{?mpi_vers} == 1
-%define _do_check 0
-%endif
-
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
%{?with_hpc:%{!?compiler_family:%global compiler_family gnu}}
%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
@@ -654,15 +650,15 @@
EOF
%endif
-%if 0%{?_do_check}
+%if %{with check}
%check
-%if 0%{?qemu_user_space_build}
+ %if 0%{?qemu_user_space_build}
# default timeout is 1200 seconds
export HDF5_ALARM_SECONDS=3600
-%endif
-%if %{with mpi}
+ %endif
+ %if %{with mpi}
export HDF5_Make_Ignore=yes
-%endif
+ %endif
%{?with_hpc:%hpc_setup}
%ifarch ppc ppc64 ppc64le aarch64
make %{?_smp_mflags} check || { echo "Ignore transient make check failures
for PowerPC or aarch64. boo#1058563"; }
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2019-04-30 13:04:11 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new.5536 (New) Package is "hdf5" Tue Apr 30 13:04:11 2019 rev:56 rq:697834 version:1.10.4 Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-04-04 12:07:04.509456645 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new.5536/hdf5.changes 2019-04-30 13:04:15.126034916 +0200 @@ -1,0 +2,5 @@ +Thu Apr 25 08:51:47 UTC 2019 - Christian Goll + +- set higher constraints for succesfull mpich tests (boo#133222) + +--- Other differences: -- ++ hdf5.spec ++ --- /var/tmp/diff_new_pack.SgXpEO/_old 2019-04-30 13:04:16.222033030 +0200 +++ /var/tmp/diff_new_pack.SgXpEO/_new 2019-04-30 13:04:16.226033023 +0200 @@ -12,7 +12,7 @@ # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. -# Please submit bugfixes or comments via http://bugs.opensuse.org/ +# Please submit bugfixes or comments via https://bugs.opensuse.org/ # ++ _constraints ++ --- /var/tmp/diff_new_pack.SgXpEO/_old 2019-04-30 13:04:16.274032940 +0200 +++ /var/tmp/diff_new_pack.SgXpEO/_new 2019-04-30 13:04:16.274032940 +0200 @@ -1,16 +1,10 @@ - - - ppc64 - ppc64le - -3000 +4000 -4 +6 -
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-04-04 12:06:46
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.3908 (New)
Package is "hdf5"
Thu Apr 4 12:06:46 2019 rev:55 rq:690889 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-02-01
11:46:08.068510024 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.3908/hdf5.changes 2019-04-04
12:07:04.509456645 +0200
@@ -1,0 +2,27 @@
+Mon Apr 1 12:41:23 UTC 2019 - norm...@linux.vnet.ibm.com
+
+- Add _constraints to avoid transient build error ppc64le
+
+---
+Sat Mar 9 15:04:06 UTC 2019 - Stefan Brüns
+
+- Update URL: and Source: to use https://.
+
+---
+Fri Mar 1 12:19:33 UTC 2019 - Egbert Eich
+
+- Like on PPC ignore transient 'make check' failures on aarch64.
+
+---
+Fri Mar 1 09:37:54 UTC 2019 - Egbert Eich
+
+- Remove ringdisabled magic as hdf5 is no longer a ring package.
+ This should resolve a number of problems in the review channels
+ for Factory with packages requiring hdf5 libs.
+
+---
+Wed Feb 13 10:37:28 UTC 2019 - Egbert Eich
+
+- Consolidate use of openmpi1, openmpi2, openmpi3 for non-HPC builds.
+
+---
New:
_constraints
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.BJkwxT/_old 2019-04-04 12:07:06.209457095 +0200
+++ /var/tmp/diff_new_pack.BJkwxT/_new 2019-04-04 12:07:06.213457096 +0200
@@ -12,7 +12,7 @@
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
-# Please submit bugfixes or comments via https://bugs.opensuse.org/
+# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
@@ -38,8 +38,6 @@
%define src_ver %{version}
%define pname hdf5
-%bcond_with ringdisabled
-
%if "%{flavor}" == ""
ExclusiveArch: do_not_build
%define package_name %pname
@@ -53,19 +51,22 @@
%if "%{flavor}" == "openmpi"
%{?DisOMPI1}
-%global mpi_flavor %{flavor}
+%global mpi_flavor openmpi
+%define mpi_vers 1
%bcond_with hpc
%endif
%if "%{flavor}" == "openmpi2"
%{?DisOMPI2}
-%global mpi_flavor %{flavor}
+%global mpi_flavor openmpi
+%define mpi_vers 2
%bcond_with hpc
%endif
%if "%{flavor}" == "openmpi3"
%{?DisOMPI3}
-%global mpi_flavor %{flavor}
+%global mpi_flavor openmpi
+%define mpi_vers 3
%bcond_with hpc
%endif
@@ -166,26 +167,21 @@
%endif
# Disable until resource issue is resolved.
-%if "%mpi_flavor" == "openmpi"
+%if "%mpi_flavor" == "openmpi" && 0%{?mpi_vers} == 1
%define _do_check 0
%endif
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
%{?with_hpc:%{!?compiler_family:%global compiler_family gnu}}
-%{?with_mpi:%{!?mpi_flavor:%global mpi_flavor openmpi}}
+%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
-%{?with_mpi:%global my_suffix -%{mpi_flavor}}
-
-# Magic for OBS Staging. Only build the flavors required by
-# other packages in the ring.
-%if %{with ringdisabled}
- %if %{with hpc} || "%{?mpi_flavor}" == "mvapich2"
-ExclusiveArch: do_not_build
- %endif
+# For compatibility package names
+%if "%{mpi_flavor}" != "openmpi" || "%{mpi_vers}" != "1"
+%define mpi_ext %{?mpi_vers}
%endif
%if %{with hpc}
-%{hpc_init -c %compiler_family %{?with_mpi:-m %mpi_flavor} %{?c_f_ver:-v
%{c_f_ver}} %{?mpi_ver:-V %{mpi_ver}} %{?ext:-e %{ext}}}
+%{hpc_init -c %compiler_family %{?with_mpi:-m %mpi_flavor} %{?c_f_ver:-v
%{c_f_ver}} %{?mpi_vers:-V %{mpi_vers}} %{?ext:-e %{ext}}}
%{?with_mpi:%global hpc_module_pname p%{pname}}
%define my_prefix %hpc_prefix
%define my_bindir %hpc_bindir
@@ -201,7 +197,8 @@
%define my_libdir %_libdir
%define my_incdir %_includedir
%else
- %define my_prefix %{_libdir}/mpi/gcc/%{mpi_flavor}
+ %define my_prefix %{_libdir}/mpi/gcc/%{mpi_flavor}%{?mpi_ext}
+ %define my_suffix -%{mpi_flavor}%{?mpi_ext}
%define my_bindir %{my_prefix}/bin
%define my_libdir %{my_prefix}/%{_lib}/
%define my_incdir %{my_prefix}/include/
@@ -228,8 +225,8 @@
Summary:Command-line programs for the HDF5 scientific data format
License:BSD-3-Clause
Group: Productivity/Scientific/Other
-Url:http://www.hdfgroup.org/HDF5/
-Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/%{pname}-%{short_ver}/%{pname}-%{src_ver}/src/%{pname}-%{src_ver}.tar.bz2
+Url:https://www.hdfgroup.org/HDF5/
+Source0:
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-02-01 11:46:04
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.28833 (New)
Package is "hdf5"
Fri Feb 1 11:46:04 2019 rev:54 rq:670067 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-01-15
09:18:44.886102797 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.28833/hdf5.changes 2019-02-01
11:46:08.068510024 +0100
@@ -1,0 +2,8 @@
+Fri Jan 25 19:14:31 UTC 2019 - e...@suse.com
+
+- Remove dependency to the hdf5-devel-data file for HPC:
+ Currently, there are no macro files for HPC - these files
+ will have to be handled differently.
+- Re-disable all non-HPC builds for SLE.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.YHcbrA/_old 2019-02-01 11:46:09.108508956 +0100
+++ /var/tmp/diff_new_pack.YHcbrA/_new 2019-02-01 11:46:09.108508956 +0100
@@ -12,15 +12,19 @@
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
-# Please submit bugfixes or comments via http://bugs.opensuse.org/
+# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
%global flavor @BUILD_FLAVOR@%{nil}
%if 0%{?is_opensuse} || 0%{?is_backports}
+%undefine DisOMPI1
+%undefine DisOMPI2
%undefine DisOMPI3
%else
+%define DisOMPI1 ExclusiveArch: do_not_build
+%undefine DisOMPI2
%define DisOMPI3 ExclusiveArch: do_not_build
%endif
@@ -48,16 +52,19 @@
%endif
%if "%{flavor}" == "openmpi"
+%{?DisOMPI1}
%global mpi_flavor %{flavor}
%bcond_with hpc
%endif
%if "%{flavor}" == "openmpi2"
+%{?DisOMPI2}
%global mpi_flavor %{flavor}
%bcond_with hpc
%endif
%if "%{flavor}" == "openmpi3"
+%{?DisOMPI3}
%global mpi_flavor %{flavor}
%bcond_with hpc
%endif
@@ -154,7 +161,7 @@
%endif
# Don't build non-HPC on SLE
-%if !0%{?is_opensuse} && !0%{?with_hpc:1} && "%{flavor}" != "serial"
+%if !0%{?is_opensuse} && !0%{?with_hpc:1}
ExclusiveArch: do_not_build
%endif
@@ -397,7 +404,7 @@
Requires: %{libname -l _cpp -s %{sonum_CXX}} = %{version}
Requires: %{libname -l _hl_cpp -s %{sonum_HL_CXX}} = %{version}
Requires: %{name} = %{version}
-Requires: %{pname}-devel-data = %{version}
+%{!?with_hpc:Requires: %{pname}-devel-data = %{version}}
%if 0%{?use_sz2}
Requires: libsz2-devel
%endif
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-01-15 09:17:46
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.28833 (New)
Package is "hdf5"
Tue Jan 15 09:17:46 2019 rev:53 rq:665663 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2019-01-05
14:42:22.428479446 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.28833/hdf5.changes 2019-01-15
09:18:44.886102797 +0100
@@ -1,0 +2,5 @@
+Mon Jan 14 08:56:39 UTC 2019 - e...@suse.com
+
+- Reenable 'serial' build for SLE: this build creates hdf5-devel-data.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.TrmD5K/_old 2019-01-15 09:18:45.550102176 +0100
+++ /var/tmp/diff_new_pack.TrmD5K/_new 2019-01-15 09:18:45.554102173 +0100
@@ -154,7 +154,7 @@
%endif
# Don't build non-HPC on SLE
-%if !0%{?is_opensuse} && !0%{?with_hpc:1}
+%if !0%{?is_opensuse} && !0%{?with_hpc:1} && "%{flavor}" != "serial"
ExclusiveArch: do_not_build
%endif
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2019-01-05 14:42:21
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.28833 (New)
Package is "hdf5"
Sat Jan 5 14:42:21 2019 rev:52 rq:662712 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-12-18
15:01:22.201982589 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.28833/hdf5.changes 2019-01-05
14:42:22.428479446 +0100
@@ -1,0 +2,12 @@
+Thu Jan 3 11:39:58 UTC 2019 - e...@suse.com
+
+- Do not build non-HPC on SLE: This helps to save some build
+ cycles.
+
+---
+Wed Dec 19 19:54:05 UTC 2018 - Todd R
+
+- Use upstream-recommended %{_rpmconfigdir}/macros.d directory
+ for the rpm macros.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.yCCJbC/_old 2019-01-05 14:42:23.376478641 +0100
+++ /var/tmp/diff_new_pack.yCCJbC/_new 2019-01-05 14:42:23.380478638 +0100
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -153,6 +153,11 @@
%global mpi_flavor mpich
%endif
+# Don't build non-HPC on SLE
+%if !0%{?is_opensuse} && !0%{?with_hpc:1}
+ExclusiveArch: do_not_build
+%endif
+
# Disable until resource issue is resolved.
%if "%mpi_flavor" == "openmpi"
%define _do_check 0
@@ -578,8 +583,8 @@
%{buildroot}%{_prefix}/share/hdf5_examples
%else
# rpm macro for version checking
-mkdir -p %{buildroot}%{_sysconfdir}/rpm
-cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf5 < %{buildroot}%{_rpmconfigdir}/macros.d/macros.hdf5 <
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-12-18 14:59:26
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.28833 (New)
Package is "hdf5"
Tue Dec 18 14:59:26 2018 rev:51 rq:658959 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-11-26
10:29:08.173110317 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.28833/hdf5.changes 2018-12-18
15:01:22.201982589 +0100
@@ -1,0 +2,5 @@
+Wed Dec 12 15:28:48 UTC 2018 - Todd R
+
+- Also build for regular openmpi2 and openmpi3
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.f3OCGH/_old 2018-12-18 15:01:22.989981409 +0100
+++ /var/tmp/diff_new_pack.f3OCGH/_new 2018-12-18 15:01:22.993981403 +0100
@@ -52,6 +52,16 @@
%bcond_with hpc
%endif
+%if "%{flavor}" == "openmpi2"
+%global mpi_flavor %{flavor}
+%bcond_with hpc
+%endif
+
+%if "%{flavor}" == "openmpi3"
+%global mpi_flavor %{flavor}
+%bcond_with hpc
+%endif
+
%if "%{flavor}" == "mvapich2"
%global mpi_flavor %{flavor}
%bcond_with hpc
++ _multibuild ++
--- /var/tmp/diff_new_pack.f3OCGH/_old 2018-12-18 15:01:23.037981337 +0100
+++ /var/tmp/diff_new_pack.f3OCGH/_new 2018-12-18 15:01:23.037981337 +0100
@@ -1,6 +1,8 @@
serial
openmpi
+ openmpi2
+ openmpi3
mvapich2
gnu-openmpi-hpc
gnu-openmpi2-hpc
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-11-26 10:28:40
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new.19453 (New)
Package is "hdf5"
Mon Nov 26 10:28:40 2018 rev:50 rq:651201 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-11-19
23:33:49.155064120 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new.19453/hdf5.changes 2018-11-26
10:29:08.173110317 +0100
@@ -0,0 +1,8 @@
+---
+Thu Nov 22 18:15:55 UTC 2018 - Stefan Brüns
+
+- Build HDF5 C++ bindings also for the MPI variants, there is no reason
+ not to do it.
+- Enable sz2 support also for MPI variants.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.JwE4v9/_old 2018-11-26 10:29:08.897109468 +0100
+++ /var/tmp/diff_new_pack.JwE4v9/_new 2018-11-26 10:29:08.901109463 +0100
@@ -314,7 +314,7 @@
This package contains the HDF5 runtime libraries.
-%{!?with_mpi:%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_cpp%{hpc_package_name_tail} -N %{pname}_cpp}}}
+%{?with_hpc:%{hpc_master_package -l -n lib%{pname}_cpp%{hpc_package_name_tail}
-N %{pname}_cpp}}
%package -n %{libname -l _hl_cpp -s %{sonum_HL_CXX}}
Summary:High-level shared libraries for the HDF5 scientific data format
@@ -330,7 +330,7 @@
This package contains the the high-level HDF5 runtime libraries.
-%{!?with_mpi:%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_hl_cpp%{hpc_package_name_tail} -N %{pname}_hl_cpp}}}
+%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_hl_cpp%{hpc_package_name_tail} -N %{pname}_hl_cpp}}
%package -n %{libname -l _fortran -s %{sonum_F}}
Summary:Shared libraries for the HDF5 scientific data format
@@ -379,10 +379,8 @@
%package devel
Summary:Development files for %{name}
Group: Development/Libraries/Parallel
-%if %{without mpi}
Requires: %{libname -l _cpp -s %{sonum_CXX}} = %{version}
Requires: %{libname -l _hl_cpp -s %{sonum_HL_CXX}} = %{version}
-%endif
Requires: %{name} = %{version}
Requires: %{pname}-devel-data = %{version}
%if 0%{?use_sz2}
@@ -463,20 +461,16 @@
libhdf5_hl%{sonum_HL}%{?my_suffix}
libhdf5_fortran%{sonum_HL_F}%{?my_suffix}
libhdf5hl_fortran%{sonum_HL_F}%{?my_suffix}
-%if %{without mpi}
libhdf5_cpp%{sonum_CXX}%{?my_suffix}
libhdf5_hl_cpp%{sonum_HL_CXX}%{?my_suffix}
-%endif
hdf5%{?my_suffix}-devel
requires %{?my_suffix}-
requires "libhdf5-%{sonum}%{?my_suffix}- = "
requires "libhdf5_hl%{sonum_HL}%{?my_suffix}- = "
requires "libhdf5_fortran%{sonum_HL_F}%{?my_suffix}- =
"
requires "libhdf5hl_fortran%{sonum_HL_F}%{?my_suffix}- =
"
-%if %{without mpi}
requires "libhdf5_cpp%{sonum_CXX}%{?my_suffix}- = "
requires "libhdf5_hl_cpp%{sonum_HL_CXX}%{?my_suffix}- =
"
-%endif
EOF
%endif
@@ -507,6 +501,7 @@
%if %{without hpc}
%if %{with mpi}
export CC="%{my_bindir}/mpicc"
+export CXX="%{my_bindir}/mpicxx"
export FC="%{my_bindir}/mpif90"
export F77="%{my_bindir}/mpif77"
export LD_LIBRARY_PATH="%{my_libdir}"
@@ -521,7 +516,7 @@
--datadir=%{_datadir} \
%endif
--docdir=%{_docdir}/%{name} \
-%else
+%else # hpc
%global _hpc_exec_prefix %hpc_exec_prefix
%global hpc_exec_prefix %_prefix
%if %{with mpi}
@@ -535,7 +530,7 @@
%endif
%hpc_configure \
%define hpc_exec_prefix %{expand:%_hpc_exec_prefix}
-%endif
+%endif # ?hpc
--disable-dependency-tracking \
--enable-fortran \
--enable-unsupported \
@@ -545,11 +540,10 @@
--enable-build-mode=production \
%if %{with mpi}
--enable-parallel \
-%else
+%endif
--enable-cxx \
- %if 0%{?use_sz2}
+%if 0%{?use_sz2}
--with-szlib \
- %endif
%endif
--with-pthread
@@ -597,10 +591,8 @@
%{hpc_write_pkgconfig -n hdf5_hl -l libhdf5_hl}
%{hpc_write_pkgconfig -n hdf5_fortran -l libhdf5_fortran}
%{hpc_write_pkgconfig -n hdf5_hl_fortran -l libhdfhl_fortran}
-%if %{without mpi}
%{hpc_write_pkgconfig -n hdf5_cpp -l libhdf5_cpp}
%{hpc_write_pkgconfig -n hdf5_hl_cpp -l libhdf5_hl_cpp}
-%endif
%hpc_write_modules_files
#%%Module1.0#
@@ -662,13 +654,10 @@
%endif
%endif
-%if %{without mpi}
%post -n %{libname -l _cpp -s %{sonum_CXX}} -p /sbin/ldconfig
%postun -n %{libname -l _cpp -s %{sonum_CXX}} -p /sbin/ldconfig
%post -n %{libname -l _hl_cpp -s %{sonum_HL_CXX}} -p /sbin/ldconfig
%postun -n %{libname -l _hl_cpp -s %{sonum_HL_CXX}} -p /sbin/ldconfig
-%endif
-
%post -n %{libname -s %{sonum}} -p /sbin/ldconfig
%postun -n %{libname -s %{sonum}} -p
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-11-19 23:33:23
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Mon Nov 19 23:33:23 2018 rev:49 rq:650136 version:1.10.4
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-11-12
09:45:28.676822862 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-11-19
23:33:49.155064120 +0100
@@ -0,0 +1,19 @@
+Mon Nov 19 08:52:43 UTC 2018 - e...@suse.com
+
+- Replace git-archive generated by downloaded tar-ball.
+
+---
+Sat Nov 17 17:21:00 UTC 2018 - e...@suse.com
+
+- Update to 1.10.4:
+
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.4/src/hdf5-1.10.4-RELEASE.txt
+ * Update Disable-phdf5-tests.patch
+ * Replace and update hdf5-buildcompare.patch by
+hdf5-Remove-timestamps-from-binaries.patch
+
+---
+Fri Nov 16 23:09:01 UTC 2018 - e...@suse.com
+
+- Remove lib*_cpp and lib*_hl_cpp dependencies for MPI for the time
+ being.
+
Old:
hdf5-1.10.3.tar.bz2
hdf5-buildcompare.patch
New:
hdf5-1.10.4.tar.bz2
hdf5-Remove-timestamps-from-binaries.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.eVk2cy/_old 2018-11-19 23:33:51.887060964 +0100
+++ /var/tmp/diff_new_pack.eVk2cy/_new 2018-11-19 23:33:51.891060959 +0100
@@ -28,8 +28,8 @@
%define _do_check 1
%define use_sz2 0
-%define vers 1.10.3
-%define _vers 1_10_3
+%define vers 1.10.4
+%define _vers 1_10_4
%define short_ver 1.10
%define src_ver %{version}
%define pname hdf5
@@ -217,7 +217,7 @@
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
Patch5: PPC64LE-Fix-long-double-handling.patch
-Patch6: hdf5-buildcompare.patch
+Patch6: hdf5-Remove-timestamps-from-binaries.patch
Patch7: hdf5-mpi.patch
Patch8: Disable-phdf5-tests.patch
Patch9: 0001-Fix-return-value-in-test_libver_bounds_open.patch
@@ -241,9 +241,11 @@
Requires: lib%{pname}hl_fortran%{sonum_HL_F} = %{version}
%else # hpc
%hpc_requires
-Requires: %{libname -l _cpp}
Requires: %{libname -l _fortran}
+%if %{without mpi}
+Requires: %{libname -l _cpp}
Requires: %{libname -l _hl_cpp}
+%endif
Requires: %{libname -l _hl}
Requires: %{libname -l hl_fortran}
Requires: %{libname}
++ Disable-phdf5-tests.patch ++
--- /var/tmp/diff_new_pack.eVk2cy/_old 2018-11-19 23:33:51.915060931 +0100
+++ /var/tmp/diff_new_pack.eVk2cy/_new 2018-11-19 23:33:51.915060931 +0100
@@ -1,18 +1,18 @@
From: Egbert Eich
-Date: Tue Nov 7 16:06:07 2017 +0100
-Subject: [PATCH]- Disable phdf5 tests.
-Git-commit: 8b3e39a25d72b9dad5a5b13fb313226abf294069
+Date: Sat Nov 17 20:11:13 2018 +0100
+Subject: Disable phdf5 tests
+Patch-mainline: never
+Git-commit: 16d758d17d9c49ab9e34d510675929b9ccc8be5a
References:
-Signed-off-by: Egbert Eich
+Signed-off-by: Egbert Eich
+Signed-off-by: Egbert Eich
---
testpar/CMakeTests.cmake | 2 +-
testpar/Makefile.am | 2 +-
- testpar/Makefile.in | 2 +-
- 3 files changed, 3 insertions(+), 3 deletions(-)
-
+ 2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/testpar/CMakeTests.cmake b/testpar/CMakeTests.cmake
-index 6e2b05e..75a65ab 100644
+index 87470f3..ce2f2e4 100644
--- a/testpar/CMakeTests.cmake
+++ b/testpar/CMakeTests.cmake
@@ -16,7 +16,7 @@
@@ -20,12 +20,12 @@
##
-add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC_EXECUTABLE}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS}
$ ${MPIEXEC_POSTFLAGS})
-+## add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC_EXECUTABLE}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS}
$ ${MPIEXEC_POSTFLAGS})
++##add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC_EXECUTABLE}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS}
$ ${MPIEXEC_POSTFLAGS})
foreach (testp ${H5P_TESTS})
add_test (NAME TEST_PAR_${testp} COMMAND ${MPIEXEC_EXECUTABLE}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS}
$ ${MPIEXEC_POSTFLAGS})
diff --git a/testpar/Makefile.am b/testpar/Makefile.am
-index b87c1df..27af0df 100644
+index 7262ca6..e9c8c4a 100644
--- a/testpar/Makefile.am
+++ b/testpar/Makefile.am
@@ -23,7 +23,7 @@ AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/test
@@ -37,16 +37,3 @@
check_PROGRAMS = $(TEST_PROG_PARA)
-diff --git a/testpar/Makefile.in b/testpar/Makefile.in
-index ed26624..2f4bbe2 100644
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-11-12 09:44:55
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Mon Nov 12 09:44:55 2018 rev:48 rq:648227 version:1.10.3
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-09-24
13:13:20.89369 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-11-12
09:45:28.676822862 +0100
@@ -1,0 +2,5 @@
+Sun Nov 11 12:15:14 UTC 2018 - e...@suse.com
+
+- Create main master package, fix dependencies.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.ywqSCe/_old 2018-11-12 09:45:29.824821117 +0100
+++ /var/tmp/diff_new_pack.ywqSCe/_new 2018-11-12 09:45:29.840821093 +0100
@@ -12,7 +12,7 @@
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
-# Please submit bugfixes or comments via https://bugs.opensuse.org/
+# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
@@ -241,6 +241,12 @@
Requires: lib%{pname}hl_fortran%{sonum_HL_F} = %{version}
%else # hpc
%hpc_requires
+Requires: %{libname -l _cpp}
+Requires: %{libname -l _fortran}
+Requires: %{libname -l _hl_cpp}
+Requires: %{libname -l _hl}
+Requires: %{libname -l hl_fortran}
+Requires: %{libname}
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
BuildRequires: lua-lmod
BuildRequires: suse-hpc >= 0.2
@@ -257,13 +263,14 @@
This package contains the %{flavor} version utility functions for working
with HDF5 files.
+%{?with_hpc:%{hpc_master_package}}
+
%package -n %{libname -s %{sonum}}
Summary:Shared libraries for the HDF5 scientific data format
# To avoid unresolvable errors due to multiple providers of the library
Group: System/Libraries
Provides: %{libname} = %{version}
Obsoletes: %{libname} < %{version}
-%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
%{?with_hpc:Requires: %{name}-module = %version}
%description -n %{libname -s %{sonum}}
@@ -280,7 +287,6 @@
Group: System/Libraries
Provides: %{libname -l _hl} = %{version}
Obsoletes: %{libname -l _hl} < %{version}
-%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
%{?with_hpc:Requires: %{name}-module = %version}
%description -n %{libname -l _hl -s %{sonum_HL}}
@@ -298,7 +304,6 @@
Group: System/Libraries
Provides: %{libname -l _cpp} = %{version}
Obsoletes: %{libname -l _cpp} < %{version}
-%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
%{?with_hpc:Requires: %{name}-module = %version}
%description -n %{libname -l _cpp -s %{sonum_CXX}}
@@ -315,7 +320,6 @@
Group: System/Libraries
Provides: %{libname -l _hl_cpp} = %{version}
Obsoletes: %{libname -l _hl_cpp} < %{version}
-%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
%{?with_hpc:Requires: %{name}-module = %version}
%description -n %{libname -l _hl_cpp -s %{sonum_HL_CXX}}
@@ -332,7 +336,6 @@
Group: System/Libraries
Provides: %{libname -l _fortran} = %{version}
Obsoletes: %{libname -l _fortran} < %{version}
-%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
%{?with_hpc:Requires: %{name}-module = %version}
%description -n %{libname -l _fortran -s %{sonum_F}}
@@ -349,7 +352,6 @@
Group: System/Libraries
Provides: %{libname -l hl_fortran} = %{version}
Obsoletes: %{libname -l hl_fortran} < %{version}
-%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
%{?with_hpc:Requires: %{name}-module = %version}
%description -n %{libname -l hl_fortran -s %{sonum_HL_F}}
@@ -428,6 +430,7 @@
Summary:Module files for %{name}
Group: Development/Libraries/Parallel
Provides: %{name}-module = %version
+Requires: lua-lmod
%description module
HDF5 is a data model, library, and file format for storing and
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-09-24 13:13:19
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Mon Sep 24 13:13:19 2018 rev:47 rq:637100 version:1.10.3
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-06-25
11:38:53.521251619 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-09-24
13:13:20.89369 +0200
@@ -1,0 +2,16 @@
+Fri Sep 21 14:50:12 UTC 2018 - Stefan Brüns
+
+- Update to 1.10.3:
+
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3-RELEASE.txt
+- Update to 1.10.2:
+
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
+- Bump soversions (101 -> 103) for libhdf5 and libhdf5_cpp
+- Drop Fix-warnings-for-missing-returns.patch, fixed upstream
+- Add 0001-Fix-return-value-in-test_libver_bounds_open.patch
+- Rebase patches (tab / space conversion):
+ * PPC64LE-Fix-long-double-handling.patch
+ * hdf5-buildcompare.patch
+ * hdf5-mpi.patch
+- Rebase Disable-phdf5-tests.patch
+
+---
Old:
Fix-warnings-for-missing-returns.patch
hdf5-1.10.1.tar.bz2
New:
0001-Fix-return-value-in-test_libver_bounds_open.patch
hdf5-1.10.3.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.3tvCAD/_old 2018-09-24 13:13:21.681696403 +0200
+++ /var/tmp/diff_new_pack.3tvCAD/_new 2018-09-24 13:13:21.685696396 +0200
@@ -12,7 +12,7 @@
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
-# Please submit bugfixes or comments via http://bugs.opensuse.org/
+# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
@@ -28,8 +28,8 @@
%define _do_check 1
%define use_sz2 0
-%define vers 1.10.1
-%define _vers 1_10_1
+%define vers 1.10.3
+%define _vers 1_10_3
%define short_ver 1.10
%define src_ver %{version}
%define pname hdf5
@@ -193,8 +193,8 @@
# TODO: The so numbers autodetected by update_so_version.sh
# do not match the so numbers that are actually built.
-%define sonum 101
-%define sonum_CXX 101
+%define sonum 103
+%define sonum_CXX 103
%define sonum_F 100
%define sonum_HL 100
%define sonum_HL_CXX 100
@@ -211,7 +211,6 @@
Source100: _multibuild
Source1000: update_so_version.sh
Patch0: hdf5-LD_LIBRARY_PATH.patch
-Patch1: Fix-warnings-for-missing-returns.patch
# not really needed but we want to get noticed if hdf5 doesn' t know our host
Patch2: hdf5-1.8.11-abort_unknown_host_config.patch
%ifarch %arm
@@ -221,6 +220,7 @@
Patch6: hdf5-buildcompare.patch
Patch7: hdf5-mpi.patch
Patch8: Disable-phdf5-tests.patch
+Patch9: 0001-Fix-return-value-in-test_libver_bounds_open.patch
BuildRequires: fdupes
%if 0%{?use_sz2}
BuildRequires: libsz2-devel
@@ -441,7 +441,6 @@
%{?with_hpc: %hpc_debug}
%setup -q -n %{pname}-%{version}
%patch0 -p1 -b .LD_LIBRARY_PATH
-%patch1 -p1
%patch2 -p0 -b .abort_unknown_host_config
%ifarch %arm
%patch4 -p0 -b .tests-arm
@@ -450,6 +449,7 @@
%patch6 -p1
%patch7 -p1
%patch8 -p1
+%patch9 -p1
%if %{without hpc}
# baselibs looks different for different flavors - generate it on the fly
++ 0001-Fix-return-value-in-test_libver_bounds_open.patch ++
>From b24bae35dcd2733e7339f87da0f2681ee06439a8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Stefan=20Br=C3=BCns?=
Date: Thu, 20 Sep 2018 20:36:13 +0200
Subject: [PATCH] Fix return value in test_libver_bounds_open
A return value is neither returned nor expected.
---
test/tfile.c | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/test/tfile.c b/test/tfile.c
index ad7f87f..d3134f8 100644
--- a/test/tfile.c
+++ b/test/tfile.c
@@ -4967,7 +4967,7 @@ test_libver_bounds_real(H5F_libver_t libver_create,
unsigned oh_vers_create,
#define VERBFNAME"tverbounds_dspace.h5"
#define VERBDSNAME "dataset 1"
#define SPACE1_DIM1 3
-static int
+static void
test_libver_bounds_open(void)
{
hid_t file = -1;/* File ID */
--
2.19.0
++ Disable-phdf5-tests.patch ++
--- /var/tmp/diff_new_pack.3tvCAD/_old 2018-09-24 13:13:21.709696354 +0200
+++ /var/tmp/diff_new_pack.3tvCAD/_new 2018-09-24 13:13:21.709696354 +0200
@@ -19,11 +19,11 @@
##
##
--add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS}
$)
-+##
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-06-25 11:38:45
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Mon Jun 25 11:38:45 2018 rev:46 rq:618379 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-04-30
22:58:26.377553743 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-06-25
11:38:53.521251619 +0200
@@ -1,0 +2,7 @@
+Tue Jun 19 06:15:06 UTC 2018 - e...@suse.com
+
+- Handle license file using %license where applicable.
+- Package example package also for HPC build and create
+ a master file for it.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.sF6mHo/_old 2018-06-25 11:38:56.545140001 +0200
+++ /var/tmp/diff_new_pack.sF6mHo/_new 2018-06-25 11:38:56.549139853 +0200
@@ -171,6 +171,7 @@
%define my_incdir %hpc_includedir
%define package_name %{hpc_package_name %_vers}
%define libname(l:s:) lib%{pname}%{-l*}%{hpc_package_name_tail %{?_vers}}
+ %define vname %{pname}_%{_vers}-hpc
%else
%if %{without mpi}
%define my_prefix %_prefix
@@ -187,6 +188,7 @@
%define package_name %pname%{?my_suffix}
%endif
%define libname(l:s:) lib%{pname}%{!-l:%{-s:-}}%{-l*}%{-s*}%{?my_suffix}
+ %define vname %{pname}
%endif
# TODO: The so numbers autodetected by update_so_version.sh
@@ -241,7 +243,7 @@
%hpc_requires
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
BuildRequires: lua-lmod
-BuildRequires: suse-hpc
+BuildRequires: suse-hpc >= 0.2
%if %{with mpi}
BuildRequires:
%{mpi_flavor}%{?mpi_vers}-%{compiler_family}%{?c_f_ver}-hpc-macros-devel
%endif
@@ -409,16 +411,18 @@
This package provides the static libraries for the %{flavor} version of HDF5.
-%package -n %{pname}-examples
+%package -n %{vname}-examples
Summary:Examples for %{name}
Group: Documentation/Other
-%description -n %{pname}-examples
+%description -n %{vname}-examples
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes.
This package provides examples of HDF5 library use.
+%{?!with_mpi:%{?with_hpc:%{hpc_master_package -n %{pname}-hpc-examples -M
%{vname}-examples}}}
+
%if %{with hpc}
%package module
Summary:Module files for %{name}
@@ -551,12 +555,19 @@
%{?with_hpc:%hpc_debug}
make install DESTDIR=%{buildroot}
-
find %{buildroot} -type f -name "*.la" -delete -print
-%if %{without mpi} && %{without hpc}
-find %{buildroot}%{_datadir}/hdf5_examples -type f \
+%if %{without mpi}
+find %{buildroot}%{_prefix}/share/hdf5_examples -type f \
| grep -v ".sh$" | xargs chmod 644
+%if %{with hpc}
+# copy to versioned subdir
+install -m 755 -d %{buildroot}%{_prefix}/share/%{version}
+mv %{buildroot}%{_prefix}/share/hdf5_examples/* \
+%{buildroot}%{_prefix}/share/%{version}
+mv %{buildroot}%{_prefix}/share/%{version} \
+%{buildroot}%{_prefix}/share/hdf5_examples
+%else
# rpm macro for version checking
mkdir -p %{buildroot}%{_sysconfdir}/rpm
cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf5 <= 1110
@@ -666,15 +678,24 @@
%hpc_module_delete_if_default
%endif
-%if %{without mpi} && %{without hpc}
-%files -n %{pname}-examples
+%if 0%{?sle_version} > 120200 || 0%{?suse_version} > 1320
+%define mylicense %license
+%else
+%define mylicense %doc
+%endif
+
+%if %{without mpi}
+%files -n %{vname}-examples
%defattr(-,root,root)
-%{_datadir}/hdf5_examples
+%{?with_hpc:%dir %{_prefix}/share/hdf5_examples}
+%{_prefix}/share/hdf5_examples%{?with_hpc:/%{version}}
+%if %{without hpc}
%files -n %{pname}-devel-data
%defattr(-,root,root,-)
%config(noreplace) %{_sysconfdir}/rpm/macros.hdf5
%endif
+%endif
%files -n %{name}
%defattr(-,root,root)
@@ -705,7 +726,8 @@
%files -n %{libname -s %{sonum}}
%defattr(-,root,root)
-%doc COPYING ACKNOWLEDGMENTS README.txt
+%doc ACKNOWLEDGMENTS README.txt
+%mylicense COPYING
##
%if %{without mpi}
%doc release_docs/HISTORY-1_8_0-1_10_0.txt
@@ -718,7 +740,7 @@
%files -n %{libname -l _hl -s %{sonum_HL}}
%defattr(-,root,root)
-%doc COPYING
+%mylicense COPYING
%defattr(0755,root,root)
%{?with_hpc:%hpc_dirs}
%{my_libdir}/libhdf5_hl.so.%{sonum_HL}
@@ -727,7 +749,7 @@
%if %{without mpi}
%files -n %{libname -l _cpp -s %{sonum_CXX}}
%defattr(-,root,root)
-%doc COPYING
+%mylicense COPYING
%defattr(0755,root,root)
%{?with_hpc:%hpc_dirs}
%{my_libdir}/libhdf5_cpp.so.%{sonum_CXX}
@@ -735,7 +757,7 @@
%files -n %{libname -l _hl_cpp -s %{sonum_HL_CXX}}
%defattr(-,root,root)
-%doc COPYING
+%mylicense
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-04-30 22:55:10
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Mon Apr 30 22:55:10 2018 rev:45 rq:602143 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-04-11
13:56:52.925885763 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-04-30
22:58:26.377553743 +0200
@@ -1,0 +2,6 @@
+Fri Apr 27 14:20:25 UTC 2018 - e...@suse.com
+
+- Fix HPC library master packages dependency: make it require
+ the correct flavor (bsc#1091237).
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.moA77Z/_old 2018-04-30 22:58:27.213523240 +0200
+++ /var/tmp/diff_new_pack.moA77Z/_new 2018-04-30 22:58:27.217523094 +0200
@@ -288,7 +288,7 @@
This package contains the %{flavor} version of the high-level HDF5
runtime libraries.
-%{?with_hpc:%{hpc_master_package -l -n lib%{pname}_hl%{hpc_package_name_tail}}}
+%{?with_hpc:%{hpc_master_package -l -n lib%{pname}_hl%{hpc_package_name_tail}
-N %{pname}_hl}}
%package -n %{libname -l _cpp -s %{sonum_CXX}}
Summary:Shared libraries for the HDF5 scientific data format
@@ -305,7 +305,7 @@
This package contains the HDF5 runtime libraries.
-%{!?with_mpi:%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_cpp%{hpc_package_name_tail
+%{!?with_mpi:%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_cpp%{hpc_package_name_tail} -N %{pname}_cpp}}}
%package -n %{libname -l _hl_cpp -s %{sonum_HL_CXX}}
Summary:High-level shared libraries for the HDF5 scientific data format
@@ -322,7 +322,7 @@
This package contains the the high-level HDF5 runtime libraries.
-%{!?with_mpi:%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_hl_cpp%{hpc_package_name_tail
+%{!?with_mpi:%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_hl_cpp%{hpc_package_name_tail} -N %{pname}_hl_cpp}}}
%package -n %{libname -l _fortran -s %{sonum_F}}
Summary:Shared libraries for the HDF5 scientific data format
@@ -339,7 +339,7 @@
This package contains the %{flavor} version of the HDF5 runtime libraries.
-%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_fortran%{hpc_package_name_tail}}}
+%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_fortran%{hpc_package_name_tail} -N %{pname}_fortran}}
%package -n %{libname -l hl_fortran -s %{sonum_HL_F}}
Summary:High-level shared libraries for the HDF5 scientific data format
@@ -357,7 +357,7 @@
This package contains the %{flavor} version of the high-level HDF5
runtime libraries.
-%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_hl_fortran%{hpc_package_name_tail}}}
+%{?with_hpc:%{hpc_master_package -l -n
lib%{pname}_hl_fortran%{hpc_package_name_tail} -N %{pname}hl_fortran}}
%package -n %{pname}-devel-data
Summary:Development data files for %{name}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-04-11 13:56:48
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Wed Apr 11 13:56:48 2018 rev:44 rq:594566 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-04-04
11:07:55.226599352 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-04-11
13:56:52.925885763 +0200
@@ -1,0 +2,7 @@
+Sat Apr 7 22:31:05 UTC 2018 - e...@suse.com
+
+- Only build one examples package for all flavors, do not
+ include dependencies as these would be flavor specific
+ (bsc#1088547).
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.wVS49C/_old 2018-04-11 13:56:53.949848737 +0200
+++ /var/tmp/diff_new_pack.wVS49C/_new 2018-04-11 13:56:53.953848592 +0200
@@ -412,12 +412,6 @@
%package -n %{pname}-examples
Summary:Examples for %{name}
Group: Documentation/Other
-Requires: %{libname -l _cpp -s %{sonum_CXX}} = %{version}
-Requires: %{libname -l _fortran -s %{sonum_F}} = %{version}
-Requires: %{libname -l _hl -s %{sonum_HL}} = %{version}
-Requires: %{libname -l _hl_cpp -s %{sonum_HL_CXX}} = %{version}
-Requires: %{libname -l hl_fortran -s %{sonum_HL_F}} = %{version}
-Requires: %{libname -s %{sonum}} = %{version}
%description -n %{pname}-examples
HDF5 is a data model, library, and file format for storing and
@@ -560,11 +554,9 @@
find %{buildroot} -type f -name "*.la" -delete -print
-%if %{without mpi}
+%if %{without mpi} && %{without hpc}
find %{buildroot}%{_datadir}/hdf5_examples -type f \
| grep -v ".sh$" | xargs chmod 644
-
- %if %{without hpc}
# rpm macro for version checking
mkdir -p %{buildroot}%{_sysconfdir}/rpm
cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf5 <
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-04-04 11:07:32
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Wed Apr 4 11:07:32 2018 rev:43 rq:593217 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-02-21
14:11:15.478650753 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-04-04
11:07:55.226599352 +0200
@@ -1,0 +2,5 @@
+Sat Mar 31 23:53:50 UTC 2018 - stefan.bru...@rwth-aachen.de
+
+- Fix some typos, one trivial, two mispelled macros
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.D6kNge/_old 2018-04-04 11:07:57.178528612 +0200
+++ /var/tmp/diff_new_pack.D6kNge/_new 2018-04-04 11:07:57.178528612 +0200
@@ -190,7 +190,7 @@
%endif
# TODO: The so numbers autodetected by update_so_version.sh
-# do not match the so numbers that are actually buit.
+# do not match the so numbers that are actually built.
%define sonum 101
%define sonum_CXX 101
%define sonum_F 100
@@ -348,7 +348,7 @@
Provides: %{libname -l hl_fortran} = %{version}
Obsoletes: %{libname -l hl_fortran} < %{version}
%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
-%{?whit_hpc:Requires: %{name}-module = %version}
+%{?with_hpc:Requires: %{name}-module = %version}
%description -n %{libname -l hl_fortran -s %{sonum_HL_F}}
HDF5 is a data model, library, and file format for storing and
@@ -724,7 +724,7 @@
%doc release_docs/RELEASE.txt
%endif
%defattr(0755,root,root)
-%{?whith_hpc:%hpc_dirs}
+%{?with_hpc:%hpc_dirs}
%{my_libdir}/libhdf5.so.%{sonum}
%{my_libdir}/libhdf5.so.%{sonum}.*
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-02-21 14:11:14
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Wed Feb 21 14:11:14 2018 rev:42 rq:577081 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-02-09
15:51:03.675816635 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-02-21
14:11:15.478650753 +0100
@@ -1,0 +2,27 @@
+Sat Feb 10 23:04:47 UTC 2018 - jeng...@inai.de
+
+- Trim description for size and drop most of the marketing blurb.
+ Fix RPM groups.
+
+---
+Sat Feb 10 17:40:10 UTC 2018 - e...@suse.com
+
+- Make module files package arch dependent: it
+ contains arch-dependent paths (boo#1080442).
+
+---
+Sat Feb 10 07:31:46 UTC 2018 - e...@suse.com
+
+- Prepend PKG_CONFIG_PATH in modules file (boo#1080426).
+
+---
+Fri Feb 9 20:10:17 UTC 2018 - e...@suse.com
+
+- Add support for openmpi2 for HPC (FATE#325089).
+
+---
+Fri Feb 9 13:48:43 UTC 2018 - cg...@suse.com
+
+- Fix summary in module files (bnc#1080259)
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.yXk9I1/_old 2018-02-21 14:11:16.746605092 +0100
+++ /var/tmp/diff_new_pack.yXk9I1/_new 2018-02-21 14:11:16.750604948 +0100
@@ -79,6 +79,15 @@
%global mpi_flavor mvapich2
%endif
+%if "%{flavor}" == "gnu-openmpi2-hpc"
+%{?DisOMPI2}
+%bcond_without hpc
+%define compiler_family gnu
+%undefine c_f_ver
+%global mpi_flavor openmpi
+%define mpi_vers 2
+%endif
+
%if "%{flavor}" == "gnu-openmpi3-hpc"
%{?DisOMPI3}
%bcond_without hpc
@@ -241,21 +250,7 @@
%description
HDF5 is a data model, library, and file format for storing and
-managing data. It supports an unlimited variety of datatypes, and
-is designed for flexible and efficient I/O and for high volume and
-complex data. HDF5 is portable and is extensible, allowing
-applications to evolve in their use of HDF5.
-
-The HDF5 technology suite is designed to organize, store, discover,
-access, analyze, share, and preserve diverse, complex data in
-continuously evolving heterogeneous computing and storage environments.
-
-HDF5 supports all types of data stored digitally, regardless of origin
-or size. Petabytes of remote sensing data collected by satellites,
-terabytes of computational results from nuclear testing models, and
-megabytes of high-resolution MRI brain scans are stored in HDF5 files,
-together with metadata necessary for efficient data sharing,
-processing, visualization, and archiving.
+managing data. It supports an unlimited variety of datatypes.
This package contains the %{flavor} version utility functions for working
with HDF5 files.
@@ -263,7 +258,7 @@
%package -n %{libname -s %{sonum}}
Summary:Shared libraries for the HDF5 scientific data format
# To avoid unresolvable errors due to multiple providers of the library
-Group: Productivity/Scientific/Other
+Group: System/Libraries
Provides: %{libname} = %{version}
Obsoletes: %{libname} < %{version}
%{?with_hpc:Provides: libhdf5%{?with_mpi:-%{mpi_flavor}}-hpc =
%{version}}
@@ -271,21 +266,7 @@
%description -n %{libname -s %{sonum}}
HDF5 is a data model, library, and file format for storing and
-managing data. It supports an unlimited variety of datatypes, and
-is designed for flexible and efficient I/O and for high volume and
-complex data. HDF5 is portable and is extensible, allowing
-applications to evolve in their use of HDF5.
-
-The HDF5 technology suite is designed to organize, store, discover,
-access, analyze, share, and preserve diverse, complex data in
-continuously evolving heterogeneous computing and storage environments.
-
-HDF5 supports all types of data stored digitally, regardless of origin
-or size. Petabytes of remote sensing data collected by satellites,
-terabytes of computational results from nuclear testing models, and
-megabytes of high-resolution MRI brain scans are stored in HDF5 files,
-together with metadata necessary for efficient data sharing,
-processing, visualization, and archiving.
+managing data. It supports an unlimited variety of datatypes.
This package contains the %{flavor} version of the HDF5 runtime libraries.
@@ -294,7 +275,7 @@
%package -n %{libname -l _hl -s %{sonum_HL}}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-02-09 15:51:00
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Fri Feb 9 15:51:00 2018 rev:41 rq:574225 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2018-01-16
09:33:50.821624171 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-02-09
15:51:03.675816635 +0100
@@ -1,0 +2,5 @@
+Thu Feb 8 11:37:06 UTC 2018 - e...@suse.com
+
+- Disable %check stage for mpich builds on s390(x) (bsc#1080022).
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.WAuGZL/_old 2018-02-09 15:51:06.031732020 +0100
+++ /var/tmp/diff_new_pack.WAuGZL/_new 2018-02-09 15:51:06.035731877 +0100
@@ -804,11 +804,13 @@
export HDF5_Make_Ignore=yes
%endif
%{?with_hpc:%hpc_setup}
-%ifarch ppc ppc64 ppc64le
-make %{?_smp_mflags} check || { echo "Ignore transient make check failures for
PowerPC. boo#1058563"; }
-%else
-make %{?_smp_mflags} check
-%endif
+ %ifarch ppc ppc64 ppc64le
+ make %{?_smp_mflags} check || { echo "Ignore transient make check failures
for PowerPC. boo#1058563"; }
+ %else
+ %if "%{?mpi_flavor}" != "mpich" || ("%_arch" != "s390" && "%_arch" !=
"s390x")
+make %{?_smp_mflags} check
+ %endif
+ %endif
%endif
%if %{without mpi}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2018-01-16 09:33:49
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Tue Jan 16 09:33:49 2018 rev:40 rq:563899 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2017-11-21
15:18:57.942366204 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2018-01-16
09:33:50.821624171 +0100
@@ -1,0 +2,11 @@
+Fri Jan 12 15:38:59 UTC 2018 - e...@suse.com
+
+- Disable the openmpi3 flavor in some products.
+
+---
+Fri Jan 5 18:34:20 UTC 2018 - e...@suse.com
+
+- Switch from gcc6 to gcc7 as additional compiler flavor for HPC on SLES.
+- Add support for mpich and openmpi3 for HPC.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.6QWR1K/_old 2018-01-16 09:33:51.873574952 +0100
+++ /var/tmp/diff_new_pack.6QWR1K/_new 2018-01-16 09:33:51.877574765 +0100
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -18,6 +18,12 @@
%global flavor @BUILD_FLAVOR@%{nil}
+%if 0%{?is_opensuse} || 0%{?is_backports}
+%undefine DisOMPI3
+%else
+%define DisOMPI3 ExclusiveArch: do_not_build
+%endif
+
#
%define _do_check 1
%define use_sz2 0
@@ -58,6 +64,7 @@
%endif
%if "%{flavor}" == "gnu-openmpi-hpc"
+%{?DisOMPI1}
%bcond_without hpc
%define compiler_family gnu
%undefine c_f_ver
@@ -72,28 +79,61 @@
%global mpi_flavor mvapich2
%endif
-%if "%{flavor}" == "gnu6-hpc"
+%if "%{flavor}" == "gnu-openmpi3-hpc"
+%{?DisOMPI3}
+%bcond_without hpc
+%define compiler_family gnu
+%undefine c_f_ver
+%global mpi_flavor openmpi
+%define mpi_vers 3
+%endif
+
+%if "%{flavor}" == "gnu-mpich-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%undefine c_f_ver
+%global mpi_flavor mpich
+%endif
+
+%if "%{flavor}" == "gnu7-hpc"
%bcond_without hpc
%define compiler_family gnu
-%define c_f_ver 6
+%define c_f_ver 7
%undefine mpi_flavor
%endif
-%if "%{flavor}" == "gnu6-openmpi-hpc"
+%if "%{flavor}" == "gnu7-openmpi-hpc"
+%{?DisOMPI1}
%bcond_without hpc
%define compiler_family gnu
-%define c_f_ver 6
+%define c_f_ver 7
%global mpi_flavor openmpi
%define mpi_vers 1
%endif
-%if "%{flavor}" == "gnu6-mvapich2-hpc"
+%if "%{flavor}" == "gnu7-mvapich2-hpc"
%bcond_without hpc
%define compiler_family gnu
-%define c_f_ver 6
+%define c_f_ver 7
%global mpi_flavor mvapich2
%endif
+%if "%{flavor}" == "gnu7-openmpi3-hpc"
+%{?DisOMPI3}
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 7
+%global mpi_flavor openmpi
+%define mpi_vers 3
+%endif
+
+%if "%{flavor}" == "gnu7-mpich-hpc"
+%bcond_without hpc
+%define compiler_family gnu
+%define c_f_ver 7
+%global mpi_flavor mpich
+%endif
+
# Disable until resource issue is resolved.
%if "%mpi_flavor" == "openmpi"
%define _do_check 0
++ _multibuild ++
--- /var/tmp/diff_new_pack.6QWR1K/_old 2018-01-16 09:33:51.929572332 +0100
+++ /var/tmp/diff_new_pack.6QWR1K/_new 2018-01-16 09:33:51.929572332 +0100
@@ -3,6 +3,8 @@
openmpi
mvapich2
gnu-openmpi-hpc
+ gnu-openmpi3-hpc
gnu-mvapich2-hpc
+ gnu-mpich-hpc
gnu-hpc
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2017-11-21 15:18:46
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Tue Nov 21 15:18:46 2017 rev:39 rq:542609 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2017-11-14
14:06:22.807345727 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2017-11-21
15:18:57.942366204 +0100
@@ -1,0 +2,5 @@
+Thu Nov 9 15:02:35 UTC 2017 - norm...@linux.vnet.ibm.com
+
+- temporarily disable make check for PowerPC boo#1058563
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.7QBLTC/_old 2017-11-21 15:19:02.070216556 +0100
+++ /var/tmp/diff_new_pack.7QBLTC/_new 2017-11-21 15:19:02.070216556 +0100
@@ -764,8 +764,12 @@
export HDF5_Make_Ignore=yes
%endif
%{?with_hpc:%hpc_setup}
+%ifarch ppc ppc64 ppc64le
+make %{?_smp_mflags} check || { echo "Ignore transient make check failures for
PowerPC. boo#1058563"; }
+%else
make %{?_smp_mflags} check
%endif
+%endif
%if %{without mpi}
%post -n %{libname -l _cpp -s %{sonum_CXX}} -p /sbin/ldconfig
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2017-11-14 14:06:13
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Tue Nov 14 14:06:13 2017 rev:38 rq:539813 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2017-11-03
16:33:13.617917451 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2017-11-14
14:06:22.807345727 +0100
@@ -1,0 +2,14 @@
+Tue Nov 7 13:23:40 UTC 2017 - e...@suse.com
+
+- Update to 1.10.1:
+
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
+- Fix-warnings-for-missing-returns.patch:
+ replace: hdf5-non_void_return.patch
+- PPC64LE-Fix-long-double-handling.patch:
+ replace: hdf5-ldouble-ppc64le.patch
+- Disable-phdf5-tests.patch:
+ replace: hdf5_disable_testphdf5.patch
+- Disabling validation tests for the MPI variant for now as they
+ seem to cause issues in OBS.
+
+---
Old:
hdf5-1.10.0-patch1.tar.bz2
hdf5-ldouble-ppc64le.patch
hdf5-non_void_return.patch
hdf5_disable_testphdf5.patch
New:
Disable-phdf5-tests.patch
Fix-warnings-for-missing-returns.patch
PPC64LE-Fix-long-double-handling.patch
hdf5-1.10.1.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.PBHq1w/_old 2017-11-14 14:06:23.471321514 +0100
+++ /var/tmp/diff_new_pack.PBHq1w/_new 2017-11-14 14:06:23.475321368 +0100
@@ -22,10 +22,10 @@
%define _do_check 1
%define use_sz2 0
-%define vers 1.10.0
-%define _vers 1_10_0
+%define vers 1.10.1
+%define _vers 1_10_1
%define short_ver 1.10
-%define src_ver %{version}-patch1
+%define src_ver %{version}
%define pname hdf5
%bcond_with ringdisabled
@@ -94,6 +94,11 @@
%global mpi_flavor mvapich2
%endif
+# Disable until resource issue is resolved.
+%if "%mpi_flavor" == "openmpi"
+%define _do_check 0
+%endif
+
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
%{?with_hpc:%{!?compiler_family:%global compiler_family gnu}}
%{?with_mpi:%{!?mpi_flavor:%global mpi_flavor openmpi}}
@@ -137,13 +142,12 @@
# TODO: The so numbers autodetected by update_so_version.sh
# do not match the so numbers that are actually buit.
-%define sonum 100
-%define sonum_CXX 100
+%define sonum 101
+%define sonum_CXX 101
%define sonum_F 100
%define sonum_HL 100
%define sonum_HL_CXX 100
%define sonum_HL_F 100
-%define sonum_TOOLS 100
Name: %{package_name}
Version:%vers
@@ -156,16 +160,16 @@
Source100: _multibuild
Source1000: update_so_version.sh
Patch0: hdf5-LD_LIBRARY_PATH.patch
-Patch1: hdf5-non_void_return.patch
+Patch1: Fix-warnings-for-missing-returns.patch
# not really needed but we want to get noticed if hdf5 doesn' t know our host
Patch2: hdf5-1.8.11-abort_unknown_host_config.patch
%ifarch %arm
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
-Patch5: hdf5-ldouble-ppc64le.patch
+Patch5: PPC64LE-Fix-long-double-handling.patch
Patch6: hdf5-buildcompare.patch
Patch7: hdf5-mpi.patch
-Patch8: hdf5_disable_testphdf5.patch
+Patch8: Disable-phdf5-tests.patch
BuildRequires: fdupes
%if 0%{?use_sz2}
BuildRequires: libsz2-devel
@@ -557,9 +561,9 @@
%prep
%{?with_hpc: %hpc_debug}
-%setup -q -n %{pname}-%{version}-patch1
+%setup -q -n %{pname}-%{version}
%patch0 -p1 -b .LD_LIBRARY_PATH
-%patch1 -p0 -b .non_void_return
+%patch1 -p1
%patch2 -p0 -b .abort_unknown_host_config
%ifarch %arm
%patch4 -p0 -b .tests-arm
++ Disable-phdf5-tests.patch ++
From: Egbert Eich
Date: Tue Nov 7 16:06:07 2017 +0100
Subject: [PATCH]- Disable phdf5 tests.
Git-commit: 8b3e39a25d72b9dad5a5b13fb313226abf294069
References:
Signed-off-by: Egbert Eich
---
testpar/CMakeTests.cmake | 2 +-
testpar/Makefile.am | 2 +-
testpar/Makefile.in | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/testpar/CMakeTests.cmake b/testpar/CMakeTests.cmake
index 6e2b05e..75a65ab 100644
--- a/testpar/CMakeTests.cmake
+++ b/testpar/CMakeTests.cmake
@@ -16,7 +16,7 @@
##
##
-add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS}
$)
+## add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS}
$)
foreach (testp ${H5P_TESTS})
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2017-11-03 16:32:05
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Fri Nov 3 16:32:05 2017 rev:37 rq:536949 version:1.10.0
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2017-10-26
18:39:20.378074386 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2017-11-03
16:33:13.617917451 +0100
@@ -1,0 +2,5 @@
+Thu Oct 26 15:51:18 UTC 2017 - e...@suse.com
+
+- Fix name: baselib.conf -> baselibs.conf
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.f33Rx0/_old 2017-11-03 16:33:14.789874794 +0100
+++ /var/tmp/diff_new_pack.f33Rx0/_new 2017-11-03 16:33:14.793874648 +0100
@@ -569,6 +569,30 @@
%patch7 -p1
%patch8 -p1
+%if %{without hpc}
+# baselibs looks different for different flavors - generate it on the fly
+cat > %{_sourcedir}/baselibs.conf <
+ requires "libhdf5-%{sonum}%{?my_suffix}- = "
+ requires "libhdf5_hl%{sonum_HL}%{?my_suffix}- = "
+ requires "libhdf5_fortran%{sonum_HL_F}%{?my_suffix}- =
"
+ requires "libhdf5hl_fortran%{sonum_HL_F}%{?my_suffix}- =
"
+%if %{without mpi}
+ requires "libhdf5_cpp%{sonum_CXX}%{?my_suffix}- = "
+ requires "libhdf5_hl_cpp%{sonum_HL_CXX}%{?my_suffix}- =
"
+%endif
+EOF
+%endif
+
%build
%{?with_hpc:%hpc_setup}
@@ -676,28 +700,7 @@
%fdupes -s %{buildroot}/%{_datadir}
%endif
-%if %{without hpc}
-# baselib looks different for different flavors - generate it on the fly
-cat > %{_sourcedir}/baselib.conf <
- requires "libhdf5-%{sonum}%{?my_suffix}- = "
- requires "libhdf5_hl%{sonum_HL}%{?my_suffix}- = "
- requires "libhdf5_fortran%{sonum_HL_F}%{?my_suffix}- =
"
-%if %{without mpi}
- requires "libhdf5_cpp%{sonum_CXX}%{?my_suffix}- = "
- requires "libhdf5_hl_cpp%{sonum_HL_CXX}%{?my_suffix}- =
"
-%endif
-EOF
-%else
+%if %{with hpc}
%{hpc_write_pkgconfig -n hdf5 -l libhdf5}
%{hpc_write_pkgconfig -n hdf5_hl -l libhdf5_hl}
%{hpc_write_pkgconfig -n hdf5_fortran -l libhdf5_fortran}
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2017-10-26 18:39:19
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Thu Oct 26 18:39:19 2017 rev:36 rq:535922 version:1.10.0
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2017-10-18
16:15:31.835416542 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2017-10-26
18:39:20.378074386 +0200
@@ -1,0 +2,5 @@
+Sun Oct 22 08:46:29 UTC 2017 - e...@suse.com
+
+- Remove openssl-devel and krb5-devel from the BuildRequires.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.za3OVJ/_old 2017-10-26 18:39:21.326030160 +0200
+++ /var/tmp/diff_new_pack.za3OVJ/_new 2017-10-26 18:39:21.330029973 +0200
@@ -167,11 +167,9 @@
Patch7: hdf5-mpi.patch
Patch8: hdf5_disable_testphdf5.patch
BuildRequires: fdupes
-BuildRequires: krb5-devel
%if 0%{?use_sz2}
BuildRequires: libsz2-devel
%endif
-BuildRequires: openssl-devel
BuildRequires: zlib-devel
%if %{without hpc}
BuildRequires: gcc-c++
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2017-10-18 16:15:30
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Wed Oct 18 16:15:30 2017 rev:35 rq:534941 version:1.10.0
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2017-09-21
12:29:39.459064476 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2017-10-18
16:15:31.835416542 +0200
@@ -1,0 +2,15 @@
+Tue Oct 17 14:07:15 UTC 2017 - e...@suse.com
+
+- Add magic to limit the number of flavors built in the OBS ring
+ to non-HPC and mvapich2 builds.
+- Fix %libname() for non-HPC builds.
+- Fix some summaries and a Requires: of devel-static.
+
+---
+Fri Sep 8 14:35:32 UTC 2017 - e...@suse.com
+
+- Convert package to multibuild.
+- Add HPC build using environment modules
+ (FATE#321717, FATE#321710).
+
+---
Old:
baselibs.conf
baselibs.conf.in
New:
_multibuild
Other differences:
--
++ hdf5.spec ++
1464 lines (skipped)
between /work/SRC/openSUSE:Factory/hdf5/hdf5.spec
and /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.spec
++ _multibuild ++
serial
openmpi
mvapich2
gnu-openmpi-hpc
gnu-mvapich2-hpc
gnu-hpc
++ update_so_version.sh ++
--- /var/tmp/diff_new_pack.GNCuyk/_old 2017-10-18 16:15:32.991362456 +0200
+++ /var/tmp/diff_new_pack.GNCuyk/_new 2017-10-18 16:15:32.995362269 +0200
@@ -13,8 +13,8 @@
cleanup()
{
- rm -f lt_vers.sh sonum_spec.sed sonum_baselibs.sed
- rm -f hdf5.spec.tmp baselibs.conf.tmp
+ rm -f lt_vers.sh sonum_spec.sed
+ rm -f hdf5.spec.tmp
}
## We are going to parse these variables from tarball:
@@ -54,9 +54,8 @@
test "${!var}" -gt 0 || exit_error "$var='${!var}' bad or undefined"
dbg "update $var=${!var}"
def_sonum="sonum${infix}"
- # create sed scripts for spec file and baselibs
+ # create sed scripts for spec file
echo "s/^%define $def_sonum .*/%define $def_sonum ${!var}/" >>
sonum_spec.sed
- echo "s/@${def_sonum}@/${!var}/g" >> sonum_baselibs.sed
done
# update spec file if needed
@@ -68,13 +67,4 @@
echo "hdf5.spec updated" >&2
fi
-# update baselibs if needed
-sed -f sonum_baselibs.sed baselibs.conf.in > baselibs.conf.tmp
-if diff -q baselibs.conf.tmp baselibs.conf &>/dev/null; then
- dbg "baselibs.conf was up-to-date"
-else
- mv baselibs.conf.tmp baselibs.conf
- echo "baselibs.conf updated" >&2
-fi
-
cleanup
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2017-09-21 12:29:38
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Thu Sep 21 12:29:38 2017 rev:34 rq:519640 version:1.10.0
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2016-10-10
17:27:53.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2017-09-21
12:29:39.459064476 +0200
@@ -1,0 +2,18 @@
+Tue Aug 29 12:03:27 UTC 2017 - h...@urpla.net
+
+- fix compiler flag substitution
+
+---
+Mon Jul 3 12:53:05 UTC 2017 - badshah...@gmail.com
+
+- Add libsz2-devel to list of Requires for -devel packages, this
+ is required for compilation against hdf5 when szlib support is
+ enabled.
+- Minor specfile cleanups using spec-cleaner.
+
+---
+Fri Jun 16 21:13:30 UTC 2017 - jungh...@votca.org
+
+- Enabled szlib support through libaec's szlib API
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.QPxFLf/_old 2017-09-21 12:29:40.766880509 +0200
+++ /var/tmp/diff_new_pack.QPxFLf/_new 2017-09-21 12:29:40.770879947 +0200
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2016 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -24,7 +24,6 @@
%endif
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
-
# TODO: The so numbers autodetected by update_so_version.sh
# do not match the so numbers that are actually buit.
%define sonum 100
@@ -59,11 +58,11 @@
Patch6: hdf5-buildcompare.patch
Patch7: hdf5-mpi.patch
Patch8: hdf5_disable_testphdf5.patch
-BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: fdupes
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
BuildRequires: krb5-devel
+BuildRequires: libsz2-devel
BuildRequires: openssl-devel
BuildRequires: zlib-devel
%if 0%{?_openmpi}
@@ -78,6 +77,7 @@
Requires: libhdf5_hl%{sonum_HL} = %{version}
Requires: libhdf5_hl_cpp%{sonum_HL_CXX} = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F} = %{version}
+BuildRoot: %{_tmppath}/%{name}-%{version}-build
%description
HDF5 is a data model, library, and file format for storing and
@@ -159,8 +159,8 @@
%package -n libhdf5-%{sonum}
Summary:Shared libraries for the HDF5 scientific data format
-Group: Productivity/Scientific/Other
# To avoid unresolvable errors due to multiple providers of the library
+Group: Productivity/Scientific/Other
Provides: libhdf5 = %{version}
Obsoletes: libhdf5 < %{version}
@@ -186,8 +186,8 @@
%package -n libhdf5-%{sonum}-openmpi
Summary:Shared libraries for the HDF5 scientific data format
-Group: Productivity/Scientific/Other
# To avoid unresolvable errors due to multiple providers of the library
+Group: Productivity/Scientific/Other
Provides: libhdf5-openmpi = %{version}
Obsoletes: libhdf5-openmpi < %{version}
@@ -213,8 +213,8 @@
%package -n libhdf5-%{sonum}-mvapich2
Summary:Shared libraries for the HDF5 scientific data format
-Group: Productivity/Scientific/Other
# To avoid unresolvable errors due to multiple providers of the library
+Group: Productivity/Scientific/Other
Provides: libhdf5-mvapich2 = %{version}
Obsoletes: libhdf5-mvapich2 < %{version}
@@ -240,8 +240,8 @@
%package -n libhdf5_hl%{sonum_HL}
Summary:High-level shared libraries for the HDF5 scientific data format
-Group: Productivity/Scientific/Other
# To avoid unresolvable errors due to multiple providers of the library
+Group: Productivity/Scientific/Other
Provides: libhdf5_hl = %{version}
Obsoletes: libhdf5_hl < %{version}
@@ -267,8 +267,8 @@
%package -n libhdf5_hl%{sonum_HL}-openmpi
Summary:High-level shared libraries for the HDF5 scientific data format
-Group: Productivity/Scientific/Other
# To avoid unresolvable errors due to multiple providers of the library
+Group: Productivity/Scientific/Other
Provides: libhdf5_hl-openmpi = %{version}
Obsoletes: libhdf5_hl-openmpi < %{version}
@@ -295,8 +295,8 @@
%package -n libhdf5_hl%{sonum_HL}-mvapich2
Summary:High-level shared libraries for the HDF5 scientific data format
-Group:
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2016-10-10 17:27:53 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) Package is "hdf5" Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2016-09-09 10:14:00.0 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-10-10 17:27:53.0 +0200 @@ -1,0 +2,6 @@ +Wed Oct 5 19:03:35 UTC 2016 - toddrme2...@gmail.com + +- Fix baselibs.conf so numbers. + Fixes bnc#1002569 + +--- Other differences: -- ++ baselibs.conf ++ --- /var/tmp/diff_new_pack.0j8yz3/_old 2016-10-10 17:27:55.0 +0200 +++ /var/tmp/diff_new_pack.0j8yz3/_new 2016-10-10 17:27:55.0 +0200 @@ -14,21 +14,21 @@ libhdf5hl_fortran100-openmpi hdf5-devel requires - - requires "libhdf5-10- = " - requires "libhdf5_hl10- = " - requires "libhdf5_cpp12- = " - requires "libhdf5_hl_cpp11- = " - requires "libhdf5_fortran10- = " - requires "libhdf5hl_fortran10- = " + requires "libhdf5-100- = " + requires "libhdf5_hl100- = " + requires "libhdf5_cpp100- = " + requires "libhdf5_hl_cpp100- = " + requires "libhdf5_fortran100- = " + requires "libhdf5hl_fortran100- = " hdf5-openmpi-devel requires -openmpi- - requires "libhdf5-10-openmpi- = " - requires "libhdf5_hl10-openmpi- = " - requires "libhdf5_fortran10-openmpi- = " - requires "libhdf5hl_fortran10-openmpi- = " + requires "libhdf5-100-openmpi- = " + requires "libhdf5_hl100-openmpi- = " + requires "libhdf5_fortran100-openmpi- = " + requires "libhdf5hl_fortran100-openmpi- = " hdf5-mvapich2-devel requires -openmpi- - requires "libhdf5-10-mvapich2- = " - requires "libhdf5_hl10-mvapich2- = " - requires "libhdf5_fortran10-mvapich2- = " - requires "libhdf5hl_fortran10-mvapich2- = " + requires "libhdf5-100-mvapich2- = " + requires "libhdf5_hl100-mvapich2- = " + requires "libhdf5_fortran100-mvapich2- = " + requires "libhdf5hl_fortran100-mvapich2- = "
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2016-09-09 10:13:54
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2016-08-03
11:39:34.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-09-09
10:14:00.0 +0200
@@ -1,0 +2,12 @@
+Tue Sep 6 08:51:09 UTC 2016 - norm...@linux.vnet.ibm.com
+
+- new hdf5_disable_testphdf5.patch to disable only testphdf5
+ for all arches and not all mpi tests for ppc64le
+ tempo patch as long as boo#997252 not solved
+
+---
+Mon Sep 5 11:00:59 UTC 2016 - norm...@linux.vnet.ibm.com
+
+- temporarily disable mpi test for ppc64le
+
+---
New:
hdf5_disable_testphdf5.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.SIciUA/_old 2016-09-09 10:14:06.0 +0200
+++ /var/tmp/diff_new_pack.SIciUA/_new 2016-09-09 10:14:06.0 +0200
@@ -58,6 +58,7 @@
Patch5: hdf5-ldouble-ppc64le.patch
Patch6: hdf5-buildcompare.patch
Patch7: hdf5-mpi.patch
+Patch8: hdf5_disable_testphdf5.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: fdupes
BuildRequires: gcc-c++
@@ -777,6 +778,7 @@
%patch5 -p1
%patch6 -p1
%patch7 -p1
+%patch8 -p1
echo "prepare parallel builds: %_mpi"
for build_dir in build %_mpi; do
@@ -886,7 +888,6 @@
export HDF5_ALARM_SECONDS=3600
%endif
make -C build check
-# ignore errors for parallel builds
export HDF5_Make_Ignore=yes
for mpi in %_mpi; do
make -C $mpi check
++ hdf5_disable_testphdf5.patch ++
From: Michel Normand
Subject: hdf5 disable testphdf5
Date: Tue, 06 Sep 2016 10:55:48 +0200
hdf5 disable testphdf5 temporarily as long as bug not solved
https://bugzilla.suse.com/show_bug.cgi?id=997252
Signed-off-by: Michel Normand
---
testpar/CMakeTests.cmake |2 --
testpar/Makefile.in |2 +-
2 files changed, 1 insertion(+), 3 deletions(-)
Index: hdf5-1.10.0-patch1/testpar/CMakeTests.cmake
===
--- hdf5-1.10.0-patch1.orig/testpar/CMakeTests.cmake
+++ hdf5-1.10.0-patch1/testpar/CMakeTests.cmake
@@ -5,8 +5,6 @@
##
##
-add_test (NAME TEST_PAR_testphdf5 COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS}
$)
-
foreach (testp ${H5P_TESTS})
add_test (NAME TEST_PAR_${testp} COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS}
${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS}
$)
endforeach (testp ${H5P_TESTS})
Index: hdf5-1.10.0-patch1/testpar/Makefile.in
===
--- hdf5-1.10.0-patch1.orig/testpar/Makefile.in
+++ hdf5-1.10.0-patch1/testpar/Makefile.in
@@ -771,7 +771,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.c
# Test programs. These are our main targets.
#
-TEST_PROG_PARA = t_mpi testphdf5 t_cache t_pflush1 t_pflush2 t_pshutdown
t_prestart t_init_term t_shapesame
+TEST_PROG_PARA = t_mpi t_cache t_pflush1 t_pflush2 t_pshutdown t_prestart
t_init_term t_shapesame
testphdf5_SOURCES = testphdf5.c t_dset.c t_file.c t_file_image.c t_mdset.c \
t_ph5basic.c t_coll_chunk.c t_span_tree.c t_chunk_alloc.c
t_filter_read.c \
t_prop.c
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2016-08-03 11:39:33
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2016-06-03
16:35:10.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-08-03
11:39:34.0 +0200
@@ -1,0 +2,6 @@
+Tue Jul 26 15:50:22 UTC 2016 - adr...@suse.de
+
+- update to 1.10.0-patch1
+
https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0-patch1/src/hdf5-1.10.0-patch1-RELEASE.txt
+
+---
Old:
hdf5-1.8.17.tar.bz2
New:
hdf5-1.10.0-patch1.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.0 +0200
+++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.0 +0200
@@ -27,22 +27,24 @@
# TODO: The so numbers autodetected by update_so_version.sh
# do not match the so numbers that are actually buit.
-%define sonum 10
-%define sonum_CXX 12
-%define sonum_F 10
-%define sonum_HL 10
-%define sonum_HL_CXX 11
-%define sonum_HL_F 10
-%define sonum_TOOLS 10
+%define sonum 100
+%define sonum_CXX 100
+%define sonum_F 100
+%define sonum_HL 100
+%define sonum_HL_CXX 100
+%define sonum_HL_F 100
+%define sonum_TOOLS 100
Name: hdf5
-Version:1.8.17
+Version:1.10.0
Release:0
+%define short_ver 1.10
+%define src_ver %{version}-patch1
Summary:Command-line programs for the HDF5 scientific data format
License:BSD-3-Clause
Group: Productivity/Scientific/Other
Url:http://www.hdfgroup.org/HDF5/
-Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}/src/hdf5-%{version}.tar.bz2
+Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{short_ver}/hdf5-%{src_ver}/src/hdf5-%{src_ver}.tar.bz2
Source1000: baselibs.conf
Source1001: baselibs.conf.in
Source1002: update_so_version.sh
@@ -765,7 +767,7 @@
This package provides examples of HDF5 library use.
%prep
-%setup -q
+%setup -q -n %name-%version-patch1
%patch0 -p1 -b .LD_LIBRARY_PATH
%patch1 -p0 -b .non_void_return
%patch2 -p0 -b .abort_unknown_host_config
@@ -816,7 +818,7 @@
--enable-shared \
--enable-cxx \
--enable-threadsafe \
- --enable-production \
+ --enable-build-mode=production \
--with-pthread
make V=1 %{?_smp_mflags}
@@ -845,7 +847,7 @@
--enable-shared \
--enable-threadsafe \
--enable-parallel \
- --enable-production \
+ --enable-build-mode=production \
--with-pthread
make %{?_smp_mflags}
@@ -940,10 +942,12 @@
%defattr(-,root,root)
%{_bindir}/gif2h5
%{_bindir}/h52gif
+%{_bindir}/h5clear
%{_bindir}/h5copy
%{_bindir}/h5debug
%{_bindir}/h5diff
%{_bindir}/h5dump
+%{_bindir}/h5format_convert
%{_bindir}/h5import
%{_bindir}/h5jam
%{_bindir}/h5ls
@@ -954,12 +958,12 @@
%{_bindir}/h5repart
%{_bindir}/h5stat
%{_bindir}/h5unjam
+%{_bindir}/h5watch
%files -n libhdf5-%{sonum}
%defattr(-,root,root)
%doc COPYING ACKNOWLEDGMENTS README.txt
-%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt
-%doc release_docs/HISTORY-1_8.txt
+%doc release_docs/HISTORY-1_8_0-1_10_0.txt
%doc release_docs/RELEASE.txt
%defattr(0755,root,root)
%{_libdir}/libhdf5.so.%{sonum}
@@ -1006,6 +1010,9 @@
%files devel
%defattr(-,root,root)
+%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt
+%doc release_docs/RELEASE.txt
+%doc ACKNOWLEDGMENTS README.txt
%{_bindir}/h5c++
%{_bindir}/h5cc
%{_bindir}/h5fc
@@ -1027,10 +1034,12 @@
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/bin/gif2h5
%{_libdir}/mpi/gcc/openmpi/bin/h52gif
+%{_libdir}/mpi/gcc/openmpi/bin/h5clear
%{_libdir}/mpi/gcc/openmpi/bin/h5copy
%{_libdir}/mpi/gcc/openmpi/bin/h5debug
%{_libdir}/mpi/gcc/openmpi/bin/h5diff
%{_libdir}/mpi/gcc/openmpi/bin/h5dump
+%{_libdir}/mpi/gcc/openmpi/bin/h5format_convert
%{_libdir}/mpi/gcc/openmpi/bin/h5import
%{_libdir}/mpi/gcc/openmpi/bin/h5jam
%{_libdir}/mpi/gcc/openmpi/bin/h5ls
@@ -1043,13 +1052,11 @@
%{_libdir}/mpi/gcc/openmpi/bin/h5stat
%{_libdir}/mpi/gcc/openmpi/bin/h5unjam
%{_libdir}/mpi/gcc/openmpi/bin/ph5diff
+%{_libdir}/mpi/gcc/openmpi/bin/h5watch
%files -n libhdf5-%{sonum}-openmpi
%defattr(-,root,root)
%doc COPYING ACKNOWLEDGMENTS README.txt
-%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt
-%doc release_docs/HISTORY-1_8.txt
-%doc release_docs/RELEASE.txt
%defattr(0755,root,root)
%{_libdir}/mpi/gcc/openmpi/%{_lib}/libhdf5.so.%{sonum}
%{_libdir}/mpi/gcc/openmpi/%{_lib}/libhdf5.so.%{sonum}.*
@@ -1113,10 +1120,7 @@
%files -n libhdf5-%{sonum}-mvapich2
%defattr(-,root,root)
-%doc COPYING
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2016-06-03 16:35:08 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) Package is "hdf5" Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2016-04-22 16:17:13.0 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-06-03 16:35:10.0 +0200 @@ -1,0 +2,6 @@ +Mon May 23 21:29:44 UTC 2016 - toddrme2...@gmail.com + +- update to 1.8.17, changes documented here: + https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.17/src/hdf5-1.8.17-RELEASE.txt + +--- Old: hdf5-1.8.16.tar.bz2 New: hdf5-1.8.17.tar.bz2 Other differences: -- ++ hdf5.spec ++ --- /var/tmp/diff_new_pack.uXoIKz/_old 2016-06-03 16:35:12.0 +0200 +++ /var/tmp/diff_new_pack.uXoIKz/_new 2016-06-03 16:35:12.0 +0200 @@ -28,7 +28,7 @@ # TODO: The so numbers autodetected by update_so_version.sh # do not match the so numbers that are actually buit. %define sonum 10 -%define sonum_CXX 11 +%define sonum_CXX 12 %define sonum_F 10 %define sonum_HL 10 %define sonum_HL_CXX 11 @@ -36,7 +36,7 @@ %define sonum_TOOLS 10 Name: hdf5 -Version:1.8.16 +Version:1.8.17 Release:0 Summary:Command-line programs for the HDF5 scientific data format License:BSD-3-Clause ++ baselibs.conf ++ --- /var/tmp/diff_new_pack.uXoIKz/_old 2016-06-03 16:35:12.0 +0200 +++ /var/tmp/diff_new_pack.uXoIKz/_new 2016-06-03 16:35:12.0 +0200 @@ -4,7 +4,7 @@ libhdf5_hl10 libhdf5_hl10-mvapich2 libhdf5_hl10-openmpi -libhdf5_cpp11 +libhdf5_cpp12 libhdf5_hl_cpp11 libhdf5_fortran10 libhdf5_fortran10-openmpi @@ -16,7 +16,7 @@ requires - requires "libhdf5-10- = " requires "libhdf5_hl10- = " - requires "libhdf5_cpp11- = " + requires "libhdf5_cpp12- = " requires "libhdf5_hl_cpp11- = " requires "libhdf5_fortran10- = " requires "libhdf5hl_fortran10- = " ++ hdf5-1.8.16.tar.bz2 -> hdf5-1.8.17.tar.bz2 ++ /work/SRC/openSUSE:Factory/hdf5/hdf5-1.8.16.tar.bz2 /work/SRC/openSUSE:Factory/.hdf5.new/hdf5-1.8.17.tar.bz2 differ: char 11, line 1
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2016-04-22 16:17:11
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2016-03-26
15:12:14.0 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-04-22
16:17:13.0 +0200
@@ -1,0 +2,7 @@
+Fri Apr 15 11:26:40 UTC 2016 - norm...@linux.vnet.ibm.com
+
+- add hdf5-mpi.patch same as fedora commit id
+ 78ddcff82b10fd80eafb7b2dc5e4ce2bb9ecbe3c
+ should avoid transient hung of t_pflush1 test
+
+---
New:
hdf5-mpi.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.atQKmX/_old 2016-04-22 16:17:14.0 +0200
+++ /var/tmp/diff_new_pack.atQKmX/_new 2016-04-22 16:17:14.0 +0200
@@ -55,6 +55,7 @@
%endif
Patch5: hdf5-ldouble-ppc64le.patch
Patch6: hdf5-buildcompare.patch
+Patch7: hdf5-mpi.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: fdupes
BuildRequires: gcc-c++
@@ -69,10 +70,10 @@
BuildRequires: mvapich2-devel
%endif
Requires: libhdf5-%{sonum} = %{version}
-Requires: libhdf5_hl%{sonum_HL} = %{version}
Requires: libhdf5_cpp%{sonum_CXX} = %{version}
-Requires: libhdf5_hl_cpp%{sonum_HL_CXX} = %{version}
Requires: libhdf5_fortran%{sonum_F} = %{version}
+Requires: libhdf5_hl%{sonum_HL} = %{version}
+Requires: libhdf5_hl_cpp%{sonum_HL_CXX} = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F} = %{version}
%description
@@ -99,8 +100,8 @@
Summary:Command-line programs for the HDF5 scientific data format
Group: Productivity/Scientific/Other
Requires: libhdf5-%{sonum}-openmpi = %{version}
-Requires: libhdf5_hl%{sonum_HL}-openmpi = %{version}
Requires: libhdf5_fortran%{sonum_F}-openmpi = %{version}
+Requires: libhdf5_hl%{sonum_HL}-openmpi = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F}-openmpi = %{version}
%description -n %{name}-openmpi
@@ -128,8 +129,8 @@
Summary:Command-line programs for the HDF5 scientific data format
Group: Productivity/Scientific/Other
Requires: libhdf5-%{sonum}-mvapich2 = %{version}
-Requires: libhdf5_hl%{sonum_HL}-mvapich2 = %{version}
Requires: libhdf5_fortran%{sonum_F}-mvapich2 = %{version}
+Requires: libhdf5_hl%{sonum_HL}-mvapich2 = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F}-mvapich2 = %{version}
%description -n %{name}-mvapich2
@@ -567,10 +568,10 @@
Requires: %{name}-devel-data = %{version}
# Required by Fortran programs?
Requires: libhdf5-%{sonum} = %{version}
-Requires: libhdf5_hl%{sonum_HL} = %{version}
Requires: libhdf5_cpp%{sonum_CXX} = %{version}
-Requires: libhdf5_hl_cpp%{sonum_HL_CXX} = %{version}
Requires: libhdf5_fortran%{sonum_F} = %{version}
+Requires: libhdf5_hl%{sonum_HL} = %{version}
+Requires: libhdf5_hl_cpp%{sonum_HL_CXX} = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F} = %{version}
%description devel
@@ -601,8 +602,8 @@
Requires: %{name}-openmpi = %{version}
# Required by Fortran programs?
Requires: libhdf5-%{sonum}-openmpi = %{version}
-Requires: libhdf5_hl%{sonum_HL}-openmpi = %{version}
Requires: libhdf5_fortran%{sonum_F}-openmpi = %{version}
+Requires: libhdf5_hl%{sonum_HL}-openmpi = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F}-openmpi = %{version}
%description openmpi-devel
@@ -633,8 +634,8 @@
Requires: %{name}-mvapich2 = %{version}
# Required by Fortran programs?
Requires: libhdf5-%{sonum}-mvapich2 = %{version}
-Requires: libhdf5_hl%{sonum_HL}-mvapich2 = %{version}
Requires: libhdf5_fortran%{sonum_F}-mvapich2 = %{version}
+Requires: libhdf5_hl%{sonum_HL}-mvapich2 = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F}-mvapich2 = %{version}
%description mvapich2-devel
@@ -737,10 +738,10 @@
Summary:Examples for %{name}
Group: Documentation/Other
Requires: libhdf5-%{sonum} = %{version}
-Requires: libhdf5_hl%{sonum_HL} = %{version}
Requires: libhdf5_cpp%{sonum_CXX} = %{version}
-Requires: libhdf5_hl_cpp%{sonum_HL_CXX} = %{version}
Requires: libhdf5_fortran%{sonum_F} = %{version}
+Requires: libhdf5_hl%{sonum_HL} = %{version}
+Requires: libhdf5_hl_cpp%{sonum_HL_CXX} = %{version}
Requires: libhdf5hl_fortran%{sonum_HL_F} = %{version}
%description examples
@@ -773,6 +774,7 @@
%endif
%patch5 -p1
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2016-03-26 15:12:13 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) Package is "hdf5" Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2016-03-16 10:24:07.0 +0100 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-03-26 15:12:14.0 +0100 @@ -1,0 +2,10 @@ +Fri Mar 18 14:26:42 UTC 2016 - toddrme2...@gmail.com + +- Split libraries into C, C++, and Fortran versions to comply with + openSUSE library packaging policies. + Fixes BNC#971602 +- Make Fortran builds required. +- Manually set so numbers. The autodetected ones weren't matching + the real ones. + +--- Other differences: -- ++ hdf5.spec ++ 791 lines (skipped) between /work/SRC/openSUSE:Factory/hdf5/hdf5.spec and /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.spec ++ baselibs.conf ++ --- /var/tmp/diff_new_pack.6tvQSX/_old 2016-03-26 15:12:15.0 +0100 +++ /var/tmp/diff_new_pack.6tvQSX/_new 2016-03-26 15:12:15.0 +0100 @@ -1,18 +1,34 @@ -libhdf5-11 +libhdf5-10 +libhdf5-10-openmpi +libhdf5-10-mvapich2 +libhdf5_hl10 +libhdf5_hl10-mvapich2 +libhdf5_hl10-openmpi +libhdf5_cpp11 +libhdf5_hl_cpp11 +libhdf5_fortran10 +libhdf5_fortran10-openmpi +libhdf5_fortran10-mvapich2 +libhdf5hl_fortran10 +libhdf5hl_fortran10-mvapich2 +libhdf5hl_fortran10-openmpi hdf5-devel requires - - requires "libhdf5-11- = " - requires "libhdf5_hl11- = " -libhdf5-11-openmpi + requires "libhdf5-10- = " + requires "libhdf5_hl10- = " + requires "libhdf5_cpp11- = " + requires "libhdf5_hl_cpp11- = " + requires "libhdf5_fortran10- = " + requires "libhdf5hl_fortran10- = " hdf5-openmpi-devel requires -openmpi- - requires "libhdf5-11-openmpi- = " - requires "libhdf5_hl11-openmpi- = " -libhdf5-11-mvapich2 -libhdf5_hl11 -libhdf5_hl11-mvapich2 -libhdf5_hl11-openmpi + requires "libhdf5-10-openmpi- = " + requires "libhdf5_hl10-openmpi- = " + requires "libhdf5_fortran10-openmpi- = " + requires "libhdf5hl_fortran10-openmpi- = " hdf5-mvapich2-devel requires -openmpi- - requires "libhdf5-11-mvapich2- = " - requires "libhdf5_hl11-mvapich2- = " + requires "libhdf5-10-mvapich2- = " + requires "libhdf5_hl10-mvapich2- = " + requires "libhdf5_fortran10-mvapich2- = " + requires "libhdf5hl_fortran10-mvapich2- = " ++ baselibs.conf.in ++ --- /var/tmp/diff_new_pack.6tvQSX/_old 2016-03-26 15:12:15.0 +0100 +++ /var/tmp/diff_new_pack.6tvQSX/_new 2016-03-26 15:12:15.0 +0100 @@ -1,18 +1,34 @@ libhdf5-@sonum@ +libhdf5-@sonum@-openmpi +libhdf5-@sonum@-mvapich2 +libhdf5_hl@sonum_HL@ +libhdf5_hl@sonum_HL@-mvapich2 +libhdf5_hl@sonum_HL@-openmpi +libhdf5_cpp@sonum_CXX@ +libhdf5_hl_cpp@sonum_HL_CXX@ +libhdf5_fortran@sonum_F@ +libhdf5_fortran@sonum_F@-openmpi +libhdf5_fortran@sonum_F@-mvapich2 +libhdf5hl_fortran@sonum_HL_F@ +libhdf5hl_fortran@sonum_HL_F@-mvapich2 +libhdf5hl_fortran@sonum_HL_F@-openmpi hdf5-devel requires - requires "libhdf5-@sonum@- = " - requires "libhdf5_hl@sonum@- = " -libhdf5-@sonum@-openmpi + requires "libhdf5_hl@sonum_HL@- = " + requires "libhdf5_cpp@sonum_CXX@- = " + requires "libhdf5_hl_cpp@sonum_HL_CXX@- = " + requires "libhdf5_fortran@sonum_F@- = " + requires "libhdf5hl_fortran@sonum_HL_F@- = " hdf5-openmpi-devel requires -openmpi- requires "libhdf5-@sonum@-openmpi- = " - requires "libhdf5_hl@sonum@-openmpi- = " -libhdf5-@sonum@-mvapich2 -libhdf5_hl@sonum@ -libhdf5_hl@sonum@-mvapich2 -libhdf5_hl@sonum@-openmpi + requires "libhdf5_hl@sonum_HL@-openmpi- = " + requires "libhdf5_fortran@sonum_F@-openmpi- = " + requires "libhdf5hl_fortran@sonum_HL_F@-openmpi- = " hdf5-mvapich2-devel requires -openmpi- requires "libhdf5-@sonum@-mvapich2- = " - requires "libhdf5_hl@sonum@-mvapich2- = " + requires "libhdf5_hl@sonum_HL@-mvapich2- = " + requires "libhdf5_fortran@sonum_F@-mvapich2- = " + requires "libhdf5hl_fortran@sonum_HL_F@-mvapich2- = "
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2016-03-16 10:24:05
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is "hdf5"
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2015-08-23
15:42:43.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-03-16
10:24:07.0 +0100
@@ -1,0 +2,15 @@
+Mon Mar 7 14:35:44 UTC 2016 - o...@aepfle.de
+
+- Remove timestamps from binaries
+ hdf5-buildcompare.patch
+
+---
+Thu Jan 28 00:08:01 UTC 2016 - sweet_...@gmx.de
+
+- update to 1.8.16, changes documented here:
+
https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.16/src/hdf5-1.8.16-RELEASE.txt
+- rebase hdf5-ldouble-ppc64le.patch
+- remove hdf5-cpp-compilation-errors.patch
+- prepare independent so versions and add TODO
+
+---
Old:
hdf5-1.8.15.tar.bz2
hdf5-cpp-compilation-errors.patch
New:
baselibs.conf.in
hdf5-1.8.16.tar.bz2
hdf5-buildcompare.patch
update_so_version.sh
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.g7ib8i/_old 2016-03-16 10:24:09.0 +0100
+++ /var/tmp/diff_new_pack.g7ib8i/_new 2016-03-16 10:24:09.0 +0100
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2015 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2016 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -25,17 +25,30 @@
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
+# TODO: since 1.8.16 we have independent so versions, see config/lt_vers.am.
+# We already have added a script "update_so_version.sh" to update all the
+# defines below and baselibs.conf. But we still need to split certain
+# subpackages to be able to use these versions.
+%define sonum 11
+%define sonum_CXX 11
+%define sonum_F 10
+%define sonum_HL 10
+%define sonum_HL_CXX 11
+%define sonum_HL_F 10
+%define sonum_TOOLS 10
+
Name: hdf5
%define libname libhdf5
-Version:1.8.15
+Version:1.8.16
Release:0
-%define sonum 10
Summary:Command-line programs for the HDF5 scientific data format
License:BSD-3-Clause
Group: Productivity/Scientific/Other
Url:http://www.hdfgroup.org/HDF5/
Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}/src/hdf5-%{version}.tar.bz2
-Source1:baselibs.conf
+Source1000: baselibs.conf
+Source1001: baselibs.conf.in
+Source1002: update_so_version.sh
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
# not really needed but we want to get noticed if hdf5 doesn' t know our host
@@ -44,8 +57,7 @@
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
Patch5: hdf5-ldouble-ppc64le.patch
-# PATCH-FIX-UPSTREAM hdf5-cpp-compilation-errors.patch badshah...@gmail.com --
Reverted a change to the H5api_adpt.h that caused compilation errors for the
C++ HDF5 applications; patch taken from upstream svn
-Patch6: hdf5-cpp-compilation-errors.patch
+Patch6: hdf5-buildcompare.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
%if 0%{?suse_version} > 1140
@@ -532,7 +544,7 @@
%patch4 -p0 -b .tests-arm
%endif
%patch5 -p1
-%patch6 -p0
+%patch6 -p1
echo "prepare parallel builds: %_mpi"
for build_dir in build %_mpi; do
++ baselibs.conf ++
--- /var/tmp/diff_new_pack.g7ib8i/_old 2016-03-16 10:24:09.0 +0100
+++ /var/tmp/diff_new_pack.g7ib8i/_new 2016-03-16 10:24:09.0 +0100
@@ -1,18 +1,18 @@
-libhdf5-10
+libhdf5-11
hdf5-devel
requires -
- requires "libhdf5-10- = "
- requires "libhdf5_hl10- = "
-libhdf5-10-openmpi
+ requires "libhdf5-11- = "
+ requires "libhdf5_hl11- = "
+libhdf5-11-openmpi
hdf5-openmpi-devel
requires -openmpi-
- requires "libhdf5-10-openmpi- = "
- requires "libhdf5_hl10-openmpi- = "
-libhdf5-10-mvapich2
-libhdf5_hl10
-libhdf5_hl10-mvapich2
-libhdf5_hl10-openmpi
+ requires "libhdf5-11-openmpi- = "
+ requires "libhdf5_hl11-openmpi- = "
+libhdf5-11-mvapich2
+libhdf5_hl11
+libhdf5_hl11-mvapich2
+libhdf5_hl11-openmpi
hdf5-mvapich2-devel
requires -openmpi-
- requires "libhdf5-10-mvapich2- = "
- requires "libhdf5_hl10-mvapich2- = "
+ requires "libhdf5-11-mvapich2- = "
+ requires "libhdf5_hl11-mvapich2- = "
++ baselibs.conf.in ++
libhdf5-@sonum@
hdf5-devel
requires -
requires "libhdf5-@sonum@- = "
requires
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2015-08-23 15:42:42
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2015-08-17
15:33:58.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2015-08-23
15:42:43.0 +0200
@@ -1,0 +2,11 @@
+Fri Aug 21 09:45:05 UTC 2015 - toddrme2...@gmail.com
+
+- Currently the regular, openmpi, and mpivachi2 versions of the
+ library packages all provide the exact same libraries. So any
+ package built against the -devel package will end up with an
+ unresolvable build error because there are multiple versions
+ of the library it can use. To avoid this, I have added generic
+ provides for the library package so packages can depend on the
+ version they really need, avoiding these build issues.
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.yM8BzT/_old 2015-08-23 15:42:44.0 +0200
+++ /var/tmp/diff_new_pack.yM8BzT/_new 2015-08-23 15:42:44.0 +0200
@@ -143,6 +143,9 @@
%package -n %{libname}-%{sonum}
Summary:Shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
+# To avoid unresolvable errors due to multiple providers of the library
+Provides: %{libname} = %{version}
+Obsoletes: %{libname} %{version}
%description -n %{libname}-%{sonum}
HDF5 is a data model, library, and file format for storing and
@@ -167,6 +170,9 @@
%package -n %{libname}-%{sonum}-openmpi
Summary:Shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
+# To avoid unresolvable errors due to multiple providers of the library
+Provides: %{libname}-openmpi = %{version}
+Obsoletes: %{libname}-openmpi %{version}
%description -n %{libname}-%{sonum}-openmpi
HDF5 is a data model, library, and file format for storing and
@@ -191,6 +197,9 @@
%package -n %{libname}-%{sonum}-mvapich2
Summary:Shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
+# To avoid unresolvable errors due to multiple providers of the library
+Provides: %{libname}-mvapich2 = %{version}
+Obsoletes: %{libname}-mvapich2 %{version}
%description -n %{libname}-%{sonum}-mvapich2
HDF5 is a data model, library, and file format for storing and
@@ -215,6 +224,9 @@
%package -n %{libname}_hl%{sonum}
Summary:High-level shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
+# To avoid unresolvable errors due to multiple providers of the library
+Provides: %{libname}_hl = %{version}
+Obsoletes: %{libname}_hl %{version}
%description -n %{libname}_hl%{sonum}
HDF5 is a data model, library, and file format for storing and
@@ -239,6 +251,9 @@
%package -n %{libname}_hl%{sonum}-openmpi
Summary:High-level shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
+# To avoid unresolvable errors due to multiple providers of the library
+Provides: %{libname}_hl-openmpi = %{version}
+Obsoletes: %{libname}_hl-openmpi %{version}
%description -n %{libname}_hl%{sonum}-openmpi
HDF5 is a data model, library, and file format for storing and
@@ -264,6 +279,9 @@
%package -n %{libname}_hl%{sonum}-mvapich2
Summary:High-level shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
+# To avoid unresolvable errors due to multiple providers of the library
+Provides: %{libname}_hl-mvapich2 = %{version}
+Obsoletes: %{libname}_hl-mvapich2 %{version}
%description -n %{libname}_hl%{sonum}-mvapich2
HDF5 is a data model, library, and file format for storing and
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2015-08-17 15:33:57
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2015-08-05
19:13:41.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2015-08-17
15:33:58.0 +0200
@@ -1,0 +2,7 @@
+Thu Aug 13 07:42:07 UTC 2015 - badshah...@gmail.com
+
+- Add hdf5-cpp-compilation-errors.patch: Reverts a change from
+ v1.8.15 to H5api_adpt.h that caused compilation errors for C++
+ HDF5 applications; patch taken from upstream svn.
+
+---
New:
hdf5-cpp-compilation-errors.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.w5t1gd/_old 2015-08-17 15:33:59.0 +0200
+++ /var/tmp/diff_new_pack.w5t1gd/_new 2015-08-17 15:33:59.0 +0200
@@ -44,6 +44,8 @@
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
Patch5: hdf5-ldouble-ppc64le.patch
+# PATCH-FIX-UPSTREAM hdf5-cpp-compilation-errors.patch badshah...@gmail.com --
Reverted a change to the H5api_adpt.h that caused compilation errors for the
C++ HDF5 applications; patch taken from upstream svn
+Patch6: hdf5-cpp-compilation-errors.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
%if 0%{?suse_version} 1140
@@ -342,8 +344,8 @@
%package openmpi-devel
Summary:Development files for %{name}-openmpi
Group: Development/Libraries/Parallel
-Requires: %{name}-openmpi = %{version}
Requires: %{name}-devel-data = %{version}
+Requires: %{name}-openmpi = %{version}
# Required by Fortran programs?
Requires: %{libname}-%{sonum}-openmpi = %{version}
Requires: %{libname}_hl%{sonum}-openmpi = %{version}
@@ -372,8 +374,8 @@
%package mvapich2-devel
Summary:Development files for %{name}-mvapich2
Group: Development/Libraries/Parallel
-Requires: %{name}-mvapich2 = %{version}
Requires: %{name}-devel-data = %{version}
+Requires: %{name}-mvapich2 = %{version}
# Required by Fortran programs?
Requires: %{libname}-%{sonum}-mvapich2 = %{version}
Requires: %{libname}_hl%{sonum}-mvapich2 = %{version}
@@ -512,6 +514,7 @@
%patch4 -p0 -b .tests-arm
%endif
%patch5 -p1
+%patch6 -p0
echo prepare parallel builds: %_mpi
for build_dir in build %_mpi; do
++ hdf5-cpp-compilation-errors.patch ++
Index: src/H5api_adpt.h
===
--- src/H5api_adpt.h(revision 26991)
+++ src/H5api_adpt.h(revision 27474)
@@ -21,13 +21,6 @@
#ifndef H5API_ADPT_H
#define H5API_ADPT_H
-#ifdef __cplusplus
-#define __attribute__(X) /*void*/
-#endif /* __cplusplus */
-#ifndef H5_HAVE_ATTRIBUTE
-#define __attribute__(X) /*void*/
-#endif /* H5_HAVE_ATTRIBUTE */
-
/* This will only be defined if HDF5 was built with CMake */
#ifdef H5_BUILT_AS_DYNAMIC_LIB
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2015-08-05 19:13:40 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) Package is hdf5 Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2015-07-25 07:43:30.0 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2015-08-05 19:13:41.0 +0200 @@ -1,0 +2,15 @@ +Mon Jul 27 11:11:12 UTC 2015 - toddrme2...@gmail.com + +- Update subpackage groups +- Make subpackage summaries and descriptions more consistent +- Provide rpm macros for version identification +- Spec file cleanups + +--- +Mon Jul 27 10:06:49 UTC 2015 - toddrme2...@gmail.com + +- Use explicit library requirements to avoid ambiguities. + Without this, packages that depend on hdf5 won't know which + library to use. + +--- Other differences: -- ++ hdf5.spec ++ 844 lines (skipped) between /work/SRC/openSUSE:Factory/hdf5/hdf5.spec and /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.spec
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2015-07-25 07:43:29 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) Package is hdf5 Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2015-05-20 23:44:46.0 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2015-07-25 07:43:30.0 +0200 @@ -1,0 +2,94 @@ +Thu Jul 23 11:30:56 UTC 2015 - toddrme2...@gmail.com + +- Fix baselibs.conf + +--- +Wed Jul 22 11:23:14 UTC 2015 - toddrme2...@gmail.com + +- update to 1.8.15 + * New Features ++ Library + - Added Memory Allocation Functions that Use the Library's Allocator + - H5Pset_istore_k and H5Pset_sym_k added validation of ik to not +exceed the max v1 btree entries (2 bytes) to these two routines. + - Added Functions to Control the Value of H5PL_no_plugin_g without +Using an Environment Variable ++ Parallel Library + - Attached an attribute destroy callback to MPI_COMM_SELF that +shuts down the HDF5 library when MPI_COMM_SELF is destroyed, +in other words, on MPI_Finalize. This should fix several issues +that users see when they forget to close HDF5 objects before ++ Fortran API + - Added Global Variables. These new global variables are equivalent to +the C definitions without the '_F': +o H5G_UDLINK_F +o H5G_SAME_LOC_F +o H5O_TYPE_UNKNOWN_F +o H5O_TYPE_GROUP_F +o H5O_TYPE_DATASET_F +o H5O_NAMED_DATATYPE_F +o H5O_TYPE_NTYPES_F ++ C++ API + - New Wrappers for C Functions H5P[s/g]et_libver_bounds + - New Wrappers to Get the Object Header's Version + - New DataType Constructor ++ Support for New Platforms, Languages, and Compilers + - Support for Linux 3.10.0-123.20.1.el7 added (LK - 2015/04/01) + * Bug Fixes since HDF5-1.8.14 ++ Library + - Addition of Error Tracing Functionality to Several C API Calls + - H5Rdereference Now Checks for HADDR_UNDEF or Uninitialized References + - Fixed Bugs in H5Sextent_copy ++ Parallel Library + - Fixed a Potential Memory Error + - Parallel Test Problem Fixed + - MPE Support ++ Tools + - h5repack crashed on enumerated 8-bit type. + - h52gif crashed non-8bit images. + - perform/benchpar.c retired. + - Source perform/ directory moved to tools/perform. ++ Fortran API + - Fortran Fails with --enable-fortran2003 and Intel 15.x Compilers + - h5tenum_insert_f Does Not Work with Default 8 Byte Integers +(xlf compiler) + - Some Fortran APIs Never Returned the Error State + - Fixed h5pget_class_f ++ C++ API + - Combined Two H5File::getObjCount Overloaded Methods +The following two methods +o ssize_t getObjCount(unsigned types) const; +o ssize_t getObjCount() const; +were combined into one: +o ssize_t getObjCount(unsigned types = H5F_OBJ_ALL) const; + - Many Warnings Were Removed + - Functionality Deprecation + The following two constructors of classes AbstractDs, IdComponent, +H5Location, and H5Object are no longer appropriate after the data member +id had been moved from IdComponent to the sub-classes in previous +releases. +o Classname(const hid_t h5_id); +o Classname(const Classname original); +The copy constructors were no-op and removed in 1.8.15. The other +constructors will be removed from 1.10 release, and then from 1.8.17 +if their removal does not cause any problems. ++ High-Level APIs: + - Suppress Warnings from Flex/Bison-generated Code + - Changed hdf5_hl.h to Include the HDF5 Main Library hdf5.h + - H5PTcreate_fl Does Not Convert to Memory Datatype + - Fix for H5LT Attribute Functions ++ Fortran High-Level APIs: + - Internal Library Fix for Missing Argument Declaration +- Build in thread-safe mode to allow parallel reads + * These are only unsupported to avoid confusing casual users. +The fotran and C++ libraries don't support thread-safe mode, +while the C library does. So you have to explicitly allow +building the thread-safe C library and the non-thread-safe C++ +and fortran libraries in order to make sure only people who +have done their research do so. Since users are going to be +accessing this through other programs, this doesn't matter. +- Build fortran 2003 libraries +- Rebase hdf5-non_void_return.patch +- Remove irrelevant hdf5-configure-long-double.patch + +--- Old:
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2015-05-20 23:44:45
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2015-01-15
16:01:08.0 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2015-05-20
23:44:46.0 +0200
@@ -1,0 +2,5 @@
+Mon May 11 13:37:50 UTC 2015 - dmuel...@suse.com
+
+- update hdf5-non_void_return.patch for GCC 5.x
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.1V4oy3/_old 2015-05-20 23:44:47.0 +0200
+++ /var/tmp/diff_new_pack.1V4oy3/_new 2015-05-20 23:44:47.0 +0200
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2015 SUSE LINUX Products GmbH, Nuernberg, Germany.
+# Copyright (c) 2015 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -206,7 +206,6 @@
This package provides the static libraries.
%endif
-%if 0%{?_mvapich2}
%package -n %{name}-mvapich2
Summary:A general purpose library and file format for storing
scientific data
Group: Development/Libraries/Other
@@ -273,7 +272,6 @@
scientific data.
This package provides the static libraries.
-%endif
%prep
%setup -q
++ hdf5-1.8.11-abort_unknown_host_config.patch ++
--- /var/tmp/diff_new_pack.1V4oy3/_old 2015-05-20 23:44:47.0 +0200
+++ /var/tmp/diff_new_pack.1V4oy3/_new 2015-05-20 23:44:47.0 +0200
@@ -1,22 +1,26 @@
configure.ac.orig 2013-05-08 08:34:56.0 +0200
-+++ configure.ac2013-06-12 11:57:59.161401364 +0200
-@@ -302,6 +302,8 @@ done
+Index: configure
+===
+--- configure.orig
configure
+@@ -4214,6 +4214,8 @@ done
if test X$host_config != Xnone; then
CC_BASENAME=`echo $CC | cut -f1 -d' ' | xargs basename 2/dev/null`
. $host_config
+else
-+ AC_MSG_ERROR([no usable host config found])
++ as_fn_error $? no usable host config found $LINENO 5
fi
-
+
## Source any special site-specific file
configure,orig 2013-05-08 08:35:37.0 +0200
-+++ configure 2013-06-12 11:58:57.991149444 +0200
-@@ -4126,6 +4126,8 @@ done
+Index: configure.ac
+===
+--- configure.ac.orig
configure.ac
+@@ -305,6 +305,8 @@ done
if test X$host_config != Xnone; then
CC_BASENAME=`echo $CC | cut -f1 -d' ' | xargs basename 2/dev/null`
. $host_config
+else
-+ as_fn_error $? no usable host config found $LINENO 5
++ AC_MSG_ERROR([no usable host config found])
fi
## Source any special site-specific file
++ hdf5-LD_LIBRARY_PATH.patch ++
--- /var/tmp/diff_new_pack.1V4oy3/_old 2015-05-20 23:44:47.0 +0200
+++ /var/tmp/diff_new_pack.1V4oy3/_new 2015-05-20 23:44:47.0 +0200
@@ -1,6 +1,8 @@
hdf5-1.8.10/src/Makefile.in.orig 2012-10-27 02:14:55.0 +0200
-+++ hdf5-1.8.10/src/Makefile.in2012-11-17 11:11:17.755746326 +0100
-@@ -1327,8 +1327,6 @@ help:
+Index: hdf5-1.8.14/src/Makefile.in
+===
+--- hdf5-1.8.14.orig/src/Makefile.in
hdf5-1.8.14/src/Makefile.in
+@@ -1667,8 +1667,6 @@ help:
# Remove the generated .c file if errors occur unless HDF5_Make_Ignore
# is set to ignore the error.
H5Tinit.c: H5detect$(EXEEXT)
@@ -9,7 +11,7 @@
$(RUNSERIAL) ./H5detect$(EXEEXT) $@ ||
\
(test $$HDF5_Make_Ignore echo *** Error ignored) || \
($(RM) $@ ; exit 1)
-@@ -1339,8 +1337,6 @@ H5Tinit.c: H5detect$(EXEEXT)
+@@ -1679,8 +1677,6 @@ H5Tinit.c: H5detect$(EXEEXT)
# Remove the generated .c file if errors occur unless HDF5_Make_Ignore
# is set to ignore the error.
H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings
++ hdf5-configure-long-double.patch ++
--- /var/tmp/diff_new_pack.1V4oy3/_old 2015-05-20 23:44:47.0 +0200
+++ /var/tmp/diff_new_pack.1V4oy3/_new 2015-05-20 23:44:47.0 +0200
@@ -1,8 +1,8 @@
-Index: hdf5-1.8.11/configure
+Index: hdf5-1.8.14/configure
===
hdf5-1.8.11.orig/configure
-+++ hdf5-1.8.11/configure
-@@ -30201,7 +30201,7 @@ else
+--- hdf5-1.8.14.orig/configure
hdf5-1.8.14/configure
+@@ -30288,7 +30288,7 @@ else
/* Test if the last 2 bytes of mantissa are lost. Mainly for
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2015-01-15 16:01:05
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2014-06-25
10:49:02.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2015-01-15
16:01:08.0 +0100
@@ -1,0 +2,16 @@
+Tue Jan 13 11:07:12 CET 2015 - p...@suse.de
+
+- Tag baselibs.conf as source.
+
+---
+Fri Jan 9 12:45:39 UTC 2015 - sweet_...@gmx.de
+
+- fix typos in ChangeLog
+
+---
+Wed Nov 19 10:52:32 UTC 2014 - pgaj...@suse.com
+
+- updated to 1.8.14:
+ * bugfix release, see RELEASE.txt
+
+---
@@ -4 +20 @@
-- updated to 1.8.3:
+- updated to 1.8.13:
@@ -42 +58 @@
-- update to 1.8.2:
+- update to 1.8.12:
Old:
hdf5-1.8.13.tar.bz2
New:
hdf5-1.8.14.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.0IGPvn/_old 2015-01-15 16:01:09.0 +0100
+++ /var/tmp/diff_new_pack.0IGPvn/_new 2015-01-15 16:01:09.0 +0100
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2014 SUSE LINUX Products GmbH, Nuernberg, Germany.
+# Copyright (c) 2015 SUSE LINUX Products GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -16,7 +16,7 @@
#
-%define hdf5_libver 8
+%define hdf5_libver 9
%define libname libhdf5
%if 0%{?sles_version}
@@ -29,13 +29,14 @@
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
Name: hdf5
-Version:1.8.13
+Version:1.8.14
Release:0
Summary:A general purpose library and file format for storing
scientific data
License:BSD-3-Clause
Group: Development/Libraries/Other
Url:http://www.hdfgroup.org/HDF5/
Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}/src/hdf5-%{version}.tar.bz2
+Source1:baselibs.conf
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
# not really needed but we want to get noticed if hdf5 doesn' t know our host
++ baselibs.conf ++
--- /var/tmp/diff_new_pack.0IGPvn/_old 2015-01-15 16:01:09.0 +0100
+++ /var/tmp/diff_new_pack.0IGPvn/_new 2015-01-15 16:01:09.0 +0100
@@ -1,18 +1,18 @@
-libhdf5-8
+libhdf5-9
hdf5-devel
requires -targettype
- requires libhdf5-8-targettype = version
- requires libhdf5_hl8-targettype = version
-libhdf5-8-openmpi
+ requires libhdf5-9-targettype = version
+ requires libhdf5_hl9-targettype = version
+libhdf5-9-openmpi
hdf5-openmpi-devel
requires -openmpi-targettype
- requires libhdf5-8-openmpi-targettype = version
- requires libhdf5_hl8-openmpi-targettype = version
-libhdf5-8-mvapich2
-libhdf5_hl8
-libhdf5_hl8-mvapich2
-libhdf5_hl8-openmpi
+ requires libhdf5-9-openmpi-targettype = version
+ requires libhdf5_hl9-openmpi-targettype = version
+libhdf5-9-mvapich2
+libhdf5_hl9
+libhdf5_hl9-mvapich2
+libhdf5_hl9-openmpi
hdf5-mvapich2-devel
requires -openmpi-targettype
- requires libhdf5-8-mvapich2-targettype = version
- requires libhdf5_hl8-mvapich2-targettype = version
+ requires libhdf5-9-mvapich2-targettype = version
+ requires libhdf5_hl9-mvapich2-targettype = version
++ hdf5-1.8.13.tar.bz2 - hdf5-1.8.14.tar.bz2 ++
/work/SRC/openSUSE:Factory/hdf5/hdf5-1.8.13.tar.bz2
/work/SRC/openSUSE:Factory/.hdf5.new/hdf5-1.8.14.tar.bz2 differ: char 11, line 1
--
To unsubscribe, e-mail: opensuse-commit+unsubscr...@opensuse.org
For additional commands, e-mail: opensuse-commit+h...@opensuse.org
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2014-06-25 10:48:59
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2014-01-23
15:45:07.0 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2014-06-25
10:49:02.0 +0200
@@ -1,0 +2,30 @@
+Mon Jun 23 11:57:36 UTC 2014 - pgaj...@suse.com
+
+- updated to 1.8.3:
+- Added an H5free_memory API call. This should be used to free memory
+ that has been allocated by HDF5 API calls. H5Tget_member_name and
+ H5Pget_class_name are two examples. The main motivation for this call
+ is Windows, where it is common for application code and the HDF5 Library
+ to be using different C run-time libraries (CRT). Using the new call
+ ensures that the same CRT handles both the allocation and free. This
+ new function can also be useful in any case where the library uses a
+ different memory manager than the application, such as when a debug
+ memory manager is in use or when the HDF5 Library is wrapped for use
+ in a managed language like Python or Java. Fixes HDFFV-7710, 8519,
+ and 8851. (DER - 2014/04/11)
+- The Core VFD (aka Memory VFD) can now be configured to track dirty
+ regions in the file and only write out the changed regions on
+ flush/close. Additionally, a page aggregation size can be set that
+ will aggregate small writes into larger writes. For example, setting
+ a 1 MiB page aggregation size will logically partition the the
+ in-memory file into 1 MiB pages that will be written out in their
+ entirety if even a single byte is dirtied. The feature is controlled
+ via the new H5Pset/get_core_write_tracking() API call. A new
+ core_paged target has been added to the check-vfd target in
+ test/Makefile.am that exercises the feature over all HDF5 VFD-aware
+ tests. (DER - 2014/04/12)
+- see http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt
+ for more
+- modified patches:
+ * hdf5-LD_LIBRARY_PATH.patch
+---
Old:
hdf5-1.8.12.tar.bz2
New:
hdf5-1.8.13.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.TsxrxA/_old 2014-06-25 10:49:03.0 +0200
+++ /var/tmp/diff_new_pack.TsxrxA/_new 2014-06-25 10:49:03.0 +0200
@@ -28,17 +28,14 @@
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
-# rpm may not like this original version number
-%define xversion 1.8.12
-
Name: hdf5
-Version:1.8.12
+Version:1.8.13
Release:0
Summary:A general purpose library and file format for storing
scientific data
License:BSD-3-Clause
Group: Development/Libraries/Other
Url:http://www.hdfgroup.org/HDF5/
-Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{xversion}/src/hdf5-%{xversion}.tar.bz2
+Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}/src/hdf5-%{version}.tar.bz2
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
# not really needed but we want to get noticed if hdf5 doesn' t know our host
@@ -278,7 +275,7 @@
%endif
%prep
-%setup -q -n %{name}-%{xversion}
+%setup -q
# don't forget to increase hdf5_libver, see also baselibs.conf
LT_VERS_INTERFACE=$(sed -n 's/^ *LT_VERS_INTERFACE *= *//p' config/lt_vers.am)
test %{hdf5_libver} = ${LT_VERS_INTERFACE} || exit 1
++ hdf5-1.8.12.tar.bz2 - hdf5-1.8.13.tar.bz2 ++
/work/SRC/openSUSE:Factory/hdf5/hdf5-1.8.12.tar.bz2
/work/SRC/openSUSE:Factory/.hdf5.new/hdf5-1.8.13.tar.bz2 differ: char 11, line 1
++ hdf5-LD_LIBRARY_PATH.patch ++
--- /var/tmp/diff_new_pack.TsxrxA/_old 2014-06-25 10:49:03.0 +0200
+++ /var/tmp/diff_new_pack.TsxrxA/_new 2014-06-25 10:49:03.0 +0200
@@ -1,15 +1,3 @@
hdf5-1.8.10/configure.orig 2012-10-27 02:14:59.0 +0200
-+++ hdf5-1.8.10/configure 2012-11-18 14:17:44.572966644 +0100
-@@ -27496,9 +27496,6 @@ if ${hdf5_cv_printf_ll+:} false; then :
- $as_echo_n (cached) 6
- else
-
--LD_LIBRARY_PATH=$LD_LIBRARY_PATH`echo $AM_LDFLAGS $LDFLAGS | sed -e
's/-L/:/g' -e 's/ //g'`
--export LD_LIBRARY_PATH
--
- for hdf5_cv_printf_ll in l ll L q unknown; do
-if test $cross_compiling = yes; then :
- continue
--- hdf5-1.8.10/src/Makefile.in.orig 2012-10-27 02:14:55.0 +0200
+++ hdf5-1.8.10/src/Makefile.in2012-11-17 11:11:17.755746326 +0100
@@ -1327,8 +1327,6 @@ help:
--
To
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2014-01-16 15:37:39
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2013-11-26
21:06:03.0 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2014-01-23
15:45:07.0 +0100
@@ -1,0 +2,8 @@
+Sun Jan 5 03:59:20 UTC 2014 - m...@suse.de
+
+- Detect IBM long double specialness on ppc64le and don't segfault
+ int the testsuite when checking that type.
+ Added patches:
+ * hdf5-ldouble-ppc64le.patch
+
+---
New:
hdf5-ldouble-ppc64le.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.T3prQB/_old 2014-01-23 15:45:08.0 +0100
+++ /var/tmp/diff_new_pack.T3prQB/_new 2014-01-23 15:45:08.0 +0100
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2013 SUSE LINUX Products GmbH, Nuernberg, Germany.
+# Copyright (c) 2014 SUSE LINUX Products GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -47,6 +47,7 @@
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
Patch5: hdf5-configure-long-double.patch
+Patch6: hdf5-ldouble-ppc64le.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
%if 0%{?suse_version} 1140
@@ -288,6 +289,7 @@
%patch4 -p0 -b .tests-arm
%endif
%patch5 -p1
+%patch6 -p1
echo prepare parallel builds: %_mpi
for build_dir in build %_mpi; do
++ hdf5-ldouble-ppc64le.patch ++
Index: hdf5-1.8.12/configure
===
--- hdf5-1.8.12/configure.orig
+++ hdf5-1.8.12/configure
@@ -30364,6 +30364,13 @@ else
unsigned char s2[8];
int ret = 1;
+#if defined __powerpc64__ defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and
+ that what hdf5 calls 'special algorithm' simply is
+ IBM ldouble 128 (i.e. two seperately scaled doubles).
+ The check below assumes big endian. */
+ ret = 0;
+#endif
if(sizeof(long double) == 16 sizeof(long) == 8) {
/*make sure the long double type has 16 bytes in size and
* 11 bits of exponent. If it is,
@@ -30468,6 +30475,13 @@ else
unsigned char s[16];
int flag=0, ret=1;
+#if defined __powerpc64__ defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and
+ that what hdf5 calls 'special algorithm' simply is
+ IBM ldouble 128 (i.e. two seperately scaled doubles).
+ The check below assumes big endian. */
+ ret = 0;
+#endif
/*Determine if long double has 16 byte in size, 11 bit exponent,
and
*the bias is 0x3ff */
if(sizeof(long double) == 16) {
Index: hdf5-1.8.12/configure.ac
===
--- hdf5-1.8.12/configure.ac.orig
+++ hdf5-1.8.12/configure.ac
@@ -3768,6 +3768,13 @@ else
unsigned char s2[8];
int ret = 1;
+#if defined __powerpc64__ defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and
+ that what hdf5 calls 'special algorithm' simply is
+ IBM ldouble 128 (i.e. two seperately scaled doubles).
+ The check below assumes big endian. */
+ ret = 0;
+#endif
if(sizeof(long double) == 16 sizeof(long) == 8) {
/*make sure the long double type has 16 bytes in size and
* 11 bits of exponent. If it is,
@@ -3846,6 +3853,13 @@ else
unsigned char s[16];
int flag=0, ret=1;
+#if defined __powerpc64__ defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and
+ that what hdf5 calls 'special algorithm' simply is
+ IBM ldouble 128 (i.e. two seperately scaled doubles).
+ The check below assumes big endian. */
+ ret = 0;
+#endif
/*Determine if long double has 16 byte in size, 11 bit exponent,
and
*the bias is 0x3ff */
if(sizeof(long double) == 16) {
Index: hdf5-1.8.12/test/dt_arith.c
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2013-11-26 21:06:01
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2013-09-25
17:14:34.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2013-11-26
21:06:03.0 +0100
@@ -1,0 +2,38 @@
+Tue Nov 26 14:27:16 UTC 2013 - pgaj...@suse.com
+
+- update to 1.8.2:
+- Added a configuration option to change the default plugin path.
+ The configure option is --with-default-plugindir=location.
+ The cmake option is -DH5_DEFAULT_PLUGINDIR:PATH=location.
+ HDFFV-8513. (ADB 2013/09/04)
+- Renamed FFLAGS to FCFLAGS in configure. (ADB 2013/08/13)
+- CMake can now package a compressed examples file, the default for
+ Windows binaries from HDF Group. (ADB - 2013/07/22)
+- h5repack: Added the ability to use plugin filters to read and write
+ files. The option uses the filter number. HDFFV-8345
+ (ADB - 2013/09/04).
+- h5dump: Added the option -N --any_path, which searches the file for
+ paths that match the search path. HDFFV-7989 (ADB - 2013/08/12).
+- h5dump: Added the optional arg 0 to -A, which excludes attributes
+ from display. HDFFV-8134 (ADB - 2013/08/01).
+- Added tutorial examples to C++/examples. They can be installed by
+ make install-examples and, in the installed directory, they can be
+ executed by running the script file run-c++-ex.sh. (BMR - 2013/09/28)
+- A new class, H5::H5Location, is added to represent the location concept
+ in the C library. It is a base class to H5::H5File and H5::H5Ojbect,
+ whose member functions are moved into H5::H5Location. H5::H5File can
+ now inherent those functions. As a result, an H5::H5File object can have
+ an attribute. (BMR - 2013/09/27)
+- Added wrappers for H5Rget_obj_type2 to retrieve the type of the object
+ that an object reference points to. (BMR - 2013/09/27)
+ H5O_type_t H5Location::getRefObjType(void *ref, H5R_type_t ref_type)
+- Added wrappers for H5Aexist to check whether an attribute exists given
+ a name. (BMR - 2013/09/27)
+ bool H5::H5Location::attrExists(const char* name)
+ bool H5::H5Location::attrExists(const H5std_string name)
+- Added a number of overloaded functions for convenience. (BMR -
2013/09/27)
+- bugfixes
+- see http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
+ for more
+
+---
Old:
hdf5-1.8.11.tar.bz2
New:
hdf5-1.8.12.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.XxZgPz/_old 2013-11-26 21:06:04.0 +0100
+++ /var/tmp/diff_new_pack.XxZgPz/_new 2013-11-26 21:06:04.0 +0100
@@ -29,10 +29,10 @@
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
# rpm may not like this original version number
-%define xversion 1.8.11
+%define xversion 1.8.12
Name: hdf5
-Version:1.8.11
+Version:1.8.12
Release:0
Summary:A general purpose library and file format for storing
scientific data
License:BSD-3-Clause
++ hdf5-1.8.11.tar.bz2 - hdf5-1.8.12.tar.bz2 ++
74174 lines of diff (skipped)
--
To unsubscribe, e-mail: opensuse-commit+unsubscr...@opensuse.org
For additional commands, e-mail: opensuse-commit+h...@opensuse.org
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2013-09-25 17:14:33
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2013-09-16
12:36:19.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2013-09-25
17:14:34.0 +0200
@@ -1,0 +2,8 @@
+Tue Sep 24 07:04:42 UTC 2013 - sch...@suse.de
+
+- hdf5-configure-long-double.patch: fix configure check for unsigned long
+ long to long double conversion to not fail spuriously for 128bit long
+ double
+- Increase testsuite timeout for qemu user space build
+
+---
New:
hdf5-configure-long-double.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.cnMrUz/_old 2013-09-25 17:14:34.0 +0200
+++ /var/tmp/diff_new_pack.cnMrUz/_new 2013-09-25 17:14:34.0 +0200
@@ -46,6 +46,7 @@
%ifarch %arm
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
+Patch5: hdf5-configure-long-double.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
%if 0%{?suse_version} 1140
@@ -286,6 +287,7 @@
%ifarch %arm
%patch4 -p0 -b .tests-arm
%endif
+%patch5 -p1
echo prepare parallel builds: %_mpi
for build_dir in build %_mpi; do
@@ -379,6 +381,10 @@
EOF
%check
+%if 0%{?qemu_user_space_build}
+# default timeout is 1200 seconds
+export HDF5_ALARM_SECONDS=3600
+%endif
make -C build check
# ignore errors for parallel builds
export HDF5_Make_Ignore=yes
++ hdf5-configure-long-double.patch ++
Index: hdf5-1.8.11/configure
===
--- hdf5-1.8.11.orig/configure
+++ hdf5-1.8.11/configure
@@ -30201,7 +30201,7 @@ else
/* Test if the last 2 bytes of mantissa are lost. Mainly for
FreeBSD on Intel
* architecture(sleipnir) where it happens. */
/*if(endian==0 c2[0]==0 c2[1]==0)*/ /*little endian*/
-if(endian==0 c2[0]==0) { /*little endian*/
+if(endian==0 size == 12 c2[0]==0) { /*little endian*/
ret = 1;
goto done;
}
@@ -30220,16 +30220,16 @@ else
* instead of 0x403e,
0x403efffe, ...,
* 0x403ef000 ...
*/
-if(endian==0 c2_cyg[0]==0 c2_cyg[1]==0 c2_cyg[2]==0
c2_cyg[3]==0)
+if(endian==0 size == 12 c2_cyg[0]==0 c2_cyg[1]==0
c2_cyg[2]==0 c2_cyg[3]==0)
ret = 1;
+if(c2_cyg)
+free(c2_cyg);
done:
if(c1)
free(c1);
if(c2)
free(c2);
-if(c2_cyg)
-free(c2_cyg);
exit(ret);
}
Index: hdf5-1.8.11/configure.ac
===
--- hdf5-1.8.11.orig/configure.ac
+++ hdf5-1.8.11/configure.ac
@@ -3665,7 +3665,7 @@ else
/* Test if the last 2 bytes of mantissa are lost. Mainly for
FreeBSD on Intel
* architecture(sleipnir) where it happens. */
/*if(endian==0 c2[0]==0 c2[1]==0)*/ /*little endian*/
-if(endian==0 c2[0]==0) { /*little endian*/
+if(endian==0 size == 12 c2[0]==0) { /*little endian*/
ret = 1;
goto done;
}
@@ -3684,16 +3684,16 @@ else
* instead of 0x403e,
0x403efffe, ...,
* 0x403ef000 ...
*/
-if(endian==0 c2_cyg[0]==0 c2_cyg[1]==0 c2_cyg[2]==0
c2_cyg[3]==0)
+if(endian==0 size == 12 c2_cyg[0]==0 c2_cyg[1]==0
c2_cyg[2]==0 c2_cyg[3]==0)
ret = 1;
+if(c2_cyg)
+free(c2_cyg);
done:
if(c1)
free(c1);
if(c2)
free(c2);
-if(c2_cyg)
-free(c2_cyg);
exit(ret);
}
], [hdf5_cv_ullong_to_ldouble_precision=yes],
[hdf5_cv_ullong_to_ldouble_precision=no],)])
--
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commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2013-09-16 12:36:18
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2013-06-18
10:31:23.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2013-09-16
12:36:19.0 +0200
@@ -1,0 +2,5 @@
+Fri Sep 13 12:18:27 UTC 2013 - pgaj...@suse.com
+
+- build with -O0 also for gcc 4.8
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.9bnG5Q/_old 2013-09-16 12:36:20.0 +0200
+++ /var/tmp/diff_new_pack.9bnG5Q/_new 2013-09-16 12:36:20.0 +0200
@@ -1,7 +1,7 @@
#
# spec file for package hdf5
#
-# Copyright (c) 2012 SUSE LINUX Products GmbH, Nuernberg, Germany.
+# Copyright (c) 2013 SUSE LINUX Products GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -298,7 +298,7 @@
export CXX=g++
export F9X=gfortran
# workaround for known gcc issue, see RELEASE.txt
-if gcc --version |grep -q 4\.6; then
+if gcc --version |grep -q 4\.[68]; then
export CFLAGS=${RPM_OPT_FLAGS/-O2/-O0}
fi
%ifarch %arm
--
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commit hdf5 for openSUSE:Factory
binC8hAQ_5iVJ.bin Description: Binary data
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2013-04-16 06:44:22
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-11-21
17:01:02.0 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2013-04-16
06:44:24.0 +0200
@@ -1,0 +2,7 @@
+Fri Apr 12 19:25:06 UTC 2013 - sweet_...@gmx.de
+
+- Update to 1.8.10-patch1:
+ * official important bug fixes for 1.8.10
+ * see RELEASE.txt Bug Fixes since HDF5-1.8.10
+
+---
Old:
hdf5-1.8.10.tar.bz2
New:
hdf5-1.8.10-patch1.tar.bz2
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.6kwLWD/_old 2013-04-16 06:44:28.0 +0200
+++ /var/tmp/diff_new_pack.6kwLWD/_new 2013-04-16 06:44:28.0 +0200
@@ -28,15 +28,17 @@
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
+# rpm may not like this original version number
+%define xversion 1.8.10-patch1
Name: hdf5
-Version:1.8.10
+Version:1.8.10.patch1
Release:0
Summary:A general purpose library and file format for storing
scientific data
License:BSD-3-Clause
Group: Development/Libraries/Other
Url:http://www.hdfgroup.org/HDF5/
-Source0:
http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-%{version}%{?snaprel}.tar.bz2
+Source0:
http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{xversion}/src/hdf5-%{xversion}.tar.bz2
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
# fix broken printf call, sent upstream
@@ -274,7 +276,7 @@
%endif
%prep
-%setup -q
+%setup -q -n %{name}-%{xversion}
%patch0 -p1 -b .LD_LIBRARY_PATH
%patch1 -p0 -b .non_void_return
%patch2 -p0 -b .fix_printf
--
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commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2012-11-21 17:00:51
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-11-06
16:04:28.0 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-11-21
17:01:02.0 +0100
@@ -1,0 +2,14 @@
+Sun Nov 18 12:31:34 UTC 2012 - sweet_...@gmx.de
+
+- Update to 1.8.10, changes documented here:
+ http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
+- remove hdf5-ph5diff.patch (fixed by upstream)
+- add hdf5-fix_printf.patch
+
+---
+Fri Nov 16 16:23:18 UTC 2012 - sweet_...@gmx.de
+
+- cosmetics, enable parallel build for suse only
+- fix build for old findutils
+
+---
Old:
hdf5-1.8.9-tests-arm.patch
hdf5-1.8.9.tar.bz2
hdf5-ph5diff.patch
New:
hdf5-1.8.10-tests-arm.patch
hdf5-1.8.10.tar.bz2
hdf5-fix_printf.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.DMnNb8/_old 2012-11-21 17:01:04.0 +0100
+++ /var/tmp/diff_new_pack.DMnNb8/_new 2012-11-21 17:01:04.0 +0100
@@ -20,13 +20,17 @@
%define libname libhdf5
%if 0%{?sles_version}
-%define _mpi openmpi mvapich2
-%else
-%define _mpi openmpi
+%define _mvapich2 1
%endif
+%if 0%{?suse_version}
+%define _openmpi 1
+%endif
+
+%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
+
Name: hdf5
-Version:1.8.9
+Version:1.8.10
Release:0
Summary:A general purpose library and file format for storing
scientific data
License:BSD-3-Clause
@@ -35,10 +39,10 @@
Source0:
http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-%{version}%{?snaprel}.tar.bz2
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
-# Fix typo bug in parallel h5diff (fixed in 1.9.x)
-Patch3: hdf5-ph5diff.patch
+# fix broken printf call, sent upstream
+Patch2: hdf5-fix_printf.patch
%ifarch %arm
-Patch4: hdf5-1.8.9-tests-arm.patch
+Patch4: hdf5-1.8.10-tests-arm.patch
%endif
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
@@ -51,8 +55,10 @@
%if 0%{?suse_version} = 1110
BuildRequires: fdupes
%endif
+%if 0%{?_openmpi}
BuildRequires: openmpi-devel
-%if 0%{?sles_version}
+%endif
+%if 0%{?_mvapich2}
BuildRequires: mvapich2-devel
%endif
@@ -129,6 +135,7 @@
Examples of HDF5 library use.
+%if 0%{?_openmpi}
%package -n %{name}-openmpi
Summary:A general purpose library and file format for storing
scientific data
Group: Development/Libraries/Other
@@ -195,9 +202,9 @@
scientific data.
This package provides the static libraries.
+%endif
-
-%if 0%{?sles_version}
+%if 0%{?_mvapich2}
%package -n %{name}-mvapich2
Summary:A general purpose library and file format for storing
scientific data
Group: Development/Libraries/Other
@@ -270,11 +277,12 @@
%setup -q
%patch0 -p1 -b .LD_LIBRARY_PATH
%patch1 -p0 -b .non_void_return
-%patch3 -p1 -b .ph5diff
+%patch2 -p0 -b .fix_printf
%ifarch %arm
%patch4 -p0 -b .tests-arm
%endif
+echo prepare parallel builds: %_mpi
for build_dir in build %_mpi; do
mkdir $build_dir
ln -s ../configure $build_dir
@@ -337,7 +345,7 @@
make install DESTDIR=%buildroot -C $build_dir
done
-find %buildroot/%_libdir -type f -name *.la -delete
+find %buildroot/%_libdir -type f -name *.la | xargs rm -f
find %{buildroot}%{_datadir}/hdf5_examples -type f \
| grep -v .sh$ | xargs chmod 644
# delete examples from parallel builds
@@ -375,6 +383,7 @@
%postun -n %{libname}_hl%{hdf5_libver} -p /sbin/ldconfig
+%if 0%{?_openmpi}
%post -n %{libname}-%{hdf5_libver}-openmpi -p /sbin/ldconfig
%postun -n %{libname}-%{hdf5_libver}-openmpi -p /sbin/ldconfig
@@ -382,8 +391,9 @@
%post -n %{libname}_hl%{hdf5_libver}-openmpi -p /sbin/ldconfig
%postun -n %{libname}_hl%{hdf5_libver}-openmpi -p /sbin/ldconfig
+%endif
-%if 0%{?sles_version}
+%if 0%{?_mvapich2}
%post -n %{libname}-%{hdf5_libver}-mvapich2 -p /sbin/ldconfig
%postun -n %{libname}-%{hdf5_libver}-mvapich2 -p /sbin/ldconfig
@@ -454,6 +464,7 @@
%defattr(-,root,root)
%{_datadir}/hdf5_examples
+%if 0%{?_openmpi}
%files -n %{name}-openmpi
%defattr(-,root,root)
%doc COPYING MANIFEST README.txt release_docs/RELEASE.txt
@@ -508,8 +519,9 @@
%files openmpi-devel-static
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/%_lib/*.a
+%endif
-%if 0%{?sles_version}
+%if
commit hdf5 for openSUSE:Factory
Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2012-11-06 16:04:26 Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) Package is hdf5, Maintainer is pgaj...@suse.com Changes: --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-09-29 15:32:22.0 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-11-06 16:04:28.0 +0100 @@ -1,0 +2,5 @@ +Mon Nov 5 12:31:22 UTC 2012 - co...@suse.com + +- fixing baselibs.conf + +--- Other differences: -- ++ baselibs.conf ++ --- /var/tmp/diff_new_pack.cBu3Q3/_old 2012-11-06 16:04:30.0 +0100 +++ /var/tmp/diff_new_pack.cBu3Q3/_new 2012-11-06 16:04:30.0 +0100 @@ -4,13 +4,14 @@ requires libhdf5-0-targettype = version requires libhdf5_hl0-targettype = version libhdf5-0-openmpi -libhdf5_hl-0-openmpi hdf5-openmpi-devel requires -openmpi-targettype requires libhdf5-0-openmpi-targettype = version requires libhdf5_hl0-openmpi-targettype = version libhdf5-0-mvapich2 -libhdf5_hl-0-mvapich2 +libhdf5_hl0 +libhdf5_hl0-mvapich2 +libhdf5_hl0-openmpi hdf5-mvapich2-devel requires -openmpi-targettype requires libhdf5-0-mvapich2-targettype = version -- To unsubscribe, e-mail: opensuse-commit+unsubscr...@opensuse.org For additional commands, e-mail: opensuse-commit+h...@opensuse.org
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2012-09-29 15:32:19
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-09-26
09:54:37.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-09-29
15:32:22.0 +0200
@@ -1,0 +2,5 @@
+Wed Sep 26 13:17:45 UTC 2012 - sweet_...@gmx.de
+
+- make sure to install the examples from non-parallel build
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.XesOzr/_old 2012-09-29 15:32:25.0 +0200
+++ /var/tmp/diff_new_pack.XesOzr/_new 2012-09-29 15:32:25.0 +0200
@@ -312,6 +312,7 @@
%configure \
--docdir=%{_docdir}/%{name} \
--prefix=%{_libdir}/mpi/gcc/$mpi \
+ --exec-prefix=%{_libdir}/mpi/gcc/$mpi \
--bindir=%{_libdir}/mpi/gcc/$mpi/bin \
--libdir=%{_libdir}/mpi/gcc/$mpi/%_lib \
--datadir=%{_libdir}/mpi/gcc/$mpi/share \
@@ -330,13 +331,17 @@
done
%install
-for build_dir in build %_mpi; do
+# install serial and parallel builds, (the serial one will win in case of
+# duplicate files)
+for build_dir in %_mpi build; do
make install DESTDIR=%buildroot -C $build_dir
done
find %buildroot/%_libdir -type f -name *.la -delete
find %{buildroot}%{_datadir}/hdf5_examples -type f \
| grep -v .sh$ | xargs chmod 644
+# delete examples from parallel builds
+rm -rf %{buildroot}%{_libdir}/mpi/gcc/*/share/hdf5_examples
%if 0%{?suse_version} = 1110
%fdupes -s %{buildroot}/%{_datadir}
%endif
--
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commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2012-09-26 09:54:36
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-09-17
16:57:17.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-09-26
09:54:37.0 +0200
@@ -1,0 +2,7 @@
+Mon Sep 24 12:29:04 UTC 2012 - sweet_...@gmx.de
+
+- don't use deprecated macro makeinstall
+- enable test suite for parallel builds
+- always build out of tree instead of copying sources
+
+---
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.K9Rog2/_old 2012-09-26 09:54:39.0 +0200
+++ /var/tmp/diff_new_pack.K9Rog2/_new 2012-09-26 09:54:39.0 +0200
@@ -275,21 +275,21 @@
%patch4 -p0 -b .tests-arm
%endif
-set -- *
-for mpi in %_mpi
-do
-mkdir $mpi
-cp -ap $@ $mpi
+for build_dir in build %_mpi; do
+mkdir $build_dir
+ln -s ../configure $build_dir
done
%build
export CC=gcc
export CXX=g++
export F9X=gfortran
-export CFLAGS=${RPM_OPT_FLAGS/O2/O0}
+export CFLAGS=${RPM_OPT_FLAGS/-O2/-O0}
# export CFLAGS=%%{optflags} -fno-strict-aliasing
+pushd build
%configure \
+ --docdir=%{_docdir}/%{name} \
--disable-dependency-tracking \
%if 0%{?suse_version} 1140
--enable-fortran \
@@ -300,6 +300,7 @@
--with-pthread
make %{?_smp_mflags}
+popd
for mpi in %_mpi;
do
@@ -307,8 +308,9 @@
export CC=%{_libdir}/mpi/gcc/$mpi/bin/mpicc
export FC=%{_libdir}/mpi/gcc/$mpi/bin/mpif90
export F77=%{_libdir}/mpi/gcc/$mpi/bin/mpif77
-export LD_LIBRARY_PATH=%{_libdir}/mpi/gcc/$mpi/%_lib
+export LD_LIBRARY_PATH=%{_libdir}/mpi/gcc/$mpi/%_lib
%configure \
+ --docdir=%{_docdir}/%{name} \
--prefix=%{_libdir}/mpi/gcc/$mpi \
--bindir=%{_libdir}/mpi/gcc/$mpi/bin \
--libdir=%{_libdir}/mpi/gcc/$mpi/%_lib \
@@ -328,9 +330,11 @@
done
%install
-%makeinstall docdir=%{buildroot}%{_docdir}
-rm -rf %{buildroot}/%{_libdir}/*.la
+for build_dir in build %_mpi; do
+ make install DESTDIR=%buildroot -C $build_dir
+done
+find %buildroot/%_libdir -type f -name *.la -delete
find %{buildroot}%{_datadir}/hdf5_examples -type f \
| grep -v .sh$ | xargs chmod 644
%if 0%{?suse_version} = 1110
@@ -350,17 +354,13 @@
%_hdf5_version %{version}
EOF
-# install parallel version
-for mpi in %_mpi;
-do
-cd $mpi
-%makeinstall docdir=%{buildroot}%{_docdir}
-rm -rf %{buildroot}/%{_libdir}/mpi/gcc/$mpi/%_lib/*.la
-cd ..
-done
-
%check
-make check
+make -C build check
+# ignore errors for parallel builds
+export HDF5_Make_Ignore=yes
+for mpi in %_mpi; do
+make -C $mpi check
+done
%post -n %{libname}-%{hdf5_libver} -p /sbin/ldconfig
--
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commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2012-09-17 16:57:16
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-06-26
15:52:16.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-09-17
16:57:17.0 +0200
@@ -1,0 +2,6 @@
+Fri Sep 7 17:24:21 UTC 2012 - sco...@free.fr
+
+- parallel versions for openmpi and mvapich2
+- add baselibs.conf
+
+---
New:
baselibs.conf
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.AaAJVM/_old 2012-09-17 16:57:18.0 +0200
+++ /var/tmp/diff_new_pack.AaAJVM/_new 2012-09-17 16:57:18.0 +0200
@@ -19,6 +19,12 @@
%define hdf5_libver 0
%define libname libhdf5
+%if 0%{?sles_version}
+%define _mpi openmpi mvapich2
+%else
+%define _mpi openmpi
+%endif
+
Name: hdf5
Version:1.8.9
Release:0
@@ -45,6 +51,10 @@
%if 0%{?suse_version} = 1110
BuildRequires: fdupes
%endif
+BuildRequires: openmpi-devel
+%if 0%{?sles_version}
+BuildRequires: mvapich2-devel
+%endif
%description
HDF5 is a general purpose library and file format for storing scientific data.
@@ -118,6 +128,144 @@
%description examples
Examples of HDF5 library use.
+
+%package -n %{name}-openmpi
+Summary:A general purpose library and file format for storing
scientific data
+Group: Development/Libraries/Other
+
+%description -n %{name}-openmpi
+HDF5 is a general purpose library and file format for storing scientific data.
+HDF5 can store two primary objects: datasets and groups. A dataset is
+essentially a multidimensional array of data elements, and a group is a
+structure for organizing objects in an HDF5 file. Using these two basic
+objects, one can create and store almost any kind of scientific data
+structure, such as images, arrays of vectors, and structured and unstructured
+grids. You can also mix and match them in HDF5 files according to your needs.
+
+%package -n %{libname}-%{hdf5_libver}-openmpi
+Summary:HDF 5 runtime libraries
+Group: System/Libraries
+
+%description -n %{libname}-%{hdf5_libver}-openmpi
+The HDF project involves the development and support of software and
+file formats for scientific data management. The HDF software includes
+I/O libraries and tools for analyzing, visualizing, and converting
+scientific data.
+
+This package contains the HDF 5 runtime libraries.
+
+%package -n %{libname}_hl%{hdf5_libver}-openmpi
+Summary:HDF 5 runtimelibraries
+Group: System/Libraries
+
+%description -n %{libname}_hl%{hdf5_libver}-openmpi
+The HDF project involves the development and support of software and
+file formats for scientific data management. The HDF software includes
+I/O libraries and tools for analyzing, visualizing, and converting
+scientific data.
+
+This package contains the HDF 5 runtime libraries.
+
+%package openmpi-devel
+Summary:Hierarchical Data File Format Version 5
+Group: Development/Libraries/Parallel
+Requires: %{name}-openmpi = %{version}
+# Required by Fortran programs?
+Requires: %{libname}-%{hdf5_libver}-openmpi = %{version}
+Requires: %{libname}_hl%{hdf5_libver}-openmpi = %{version}
+
+%description openmpi-devel
+The HDF project involves the development and support of software and
+file formats for scientific data management. The HDF software includes
+I/O libraries and tools for analyzing, visualizing, and converting
+scientific data.
+
+This package contains all files needed to create projects that use
+hdf5.
+
+%package openmpi-devel-static
+Summary:Hierarchical Data File Format Version 5 - static libraries
+Group: Development/Libraries/C and C++
+Requires: hdf5-openmpi-devel
+
+%description openmpi-devel-static
+The HDF project involves the development and support of software and
+file formats for scientific data management. The HDF software includes
+I/O libraries and tools for analyzing, visualizing, and converting
+scientific data.
+
+This package provides the static libraries.
+
+
+%if 0%{?sles_version}
+%package -n %{name}-mvapich2
+Summary:A general purpose library and file format for storing
scientific data
+Group: Development/Libraries/Other
+
+%description -n %{name}-mvapich2
+HDF5 is a general purpose library and file format for storing scientific data.
+HDF5 can store two primary objects: datasets and groups. A dataset is
+essentially a multidimensional array of data elements, and a group is a
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2012-06-26 15:51:23
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-05-29
11:43:47.0 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-06-26
15:52:16.0 +0200
@@ -1,0 +2,10 @@
+Wed Jun 20 09:39:44 UTC 2012 - sweet_...@gmx.de
+
+ - minor rpm portability build fixes
+ - remove unused source file h5comp
+ - enable all tests on ppc again (remove hdf5-1.8.8-tstlite.patch)
+ - build fixes for arm
+ * avoid some false positives no-return-in-nonvoid-function
+ * disable some tests on arm only (hdf5-1.8.9-tests-arm.patch)
+
+---
Old:
h5comp
hdf5-1.8.8-tstlite.patch
New:
hdf5-1.8.9-tests-arm.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.Z11SJy/_old 2012-06-26 15:52:18.0 +0200
+++ /var/tmp/diff_new_pack.Z11SJy/_new 2012-06-26 15:52:18.0 +0200
@@ -27,19 +27,24 @@
Group: Development/Libraries/Other
Url:http://www.hdfgroup.org/HDF5/
Source0:
http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-%{version}%{?snaprel}.tar.bz2
-Source1:h5comp
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
-Patch2: hdf5-1.8.8-tstlite.patch
-# Fix typo bug in parallel h5diff
+# Fix typo bug in parallel h5diff (fixed in 1.9.x)
Patch3: hdf5-ph5diff.patch
+%ifarch %arm
+Patch4: hdf5-1.8.9-tests-arm.patch
+%endif
BuildRoot: %{_tmppath}/%{name}-%{version}-build
-BuildRequires: fdupes
BuildRequires: gcc-c++
+%if 0%{?suse_version} 1140
BuildRequires: gcc-fortran
+%endif
BuildRequires: krb5-devel
BuildRequires: openssl-devel
BuildRequires: zlib-devel
+%if 0%{?suse_version} = 1110
+BuildRequires: fdupes
+%endif
%description
HDF5 is a general purpose library and file format for storing scientific data.
@@ -116,15 +121,11 @@
%prep
%setup -q
%patch0 -p1 -b .LD_LIBRARY_PATH
-%patch1 -b .non_void_return
-%ifarch ppc64 s390x
-# the tstlite test fails with stack smashing detected on these arches
-%patch2 -p1 -b .tstlite
-%endif
+%patch1 -p0 -b .non_void_return
%patch3 -p1 -b .ph5diff
-
-#This should be fixed in 1.8.7
-find \( -name '*.[ch]*' -o -name '*.f90' -o -name '*.txt' \) -exec chmod -x {}
+
+%ifarch %arm
+%patch4 -p0 -b .tests-arm
+%endif
%build
export CC=gcc
@@ -141,9 +142,7 @@
--enable-hl \
--enable-shared \
--enable-cxx \
- --with-pthread \
- --with-ssl \
-# --with-pic
+ --with-pthread
make %{?_smp_mflags}
@@ -153,8 +152,9 @@
find %{buildroot}%{_datadir}/hdf5_examples -type f \
| grep -v .sh$ | xargs chmod 644
-
+%if 0%{?suse_version} = 1110
%fdupes -s %{buildroot}/%{_datadir}
+%endif
# rpm macro for version checking
mkdir -p %{buildroot}%{_sysconfdir}/rpm
++ hdf5-1.8.9-tests-arm.patch ++
--- ./test/testhdf5.c.orig 2012-05-09 17:05:49.0 +0200
+++ ./test/testhdf5.c 2012-06-20 19:22:33.332532223 +0200
@@ -57,7 +57,6 @@ main(int argc, char *argv[])
AddTest(coords, test_coords, cleanup_coords, Dataspace coordinates,
NULL);
AddTest(sohm, test_sohm, cleanup_sohm, Shared Object Header Messages,
NULL);
AddTest(attr, test_attr, cleanup_attr, Attributes, NULL);
-AddTest(select, test_select, cleanup_select, Selections, NULL);
AddTest(time, test_time, cleanup_time, Time Datatypes, NULL);
AddTest(reference, test_reference, cleanup_reference, References,
NULL);
AddTest(vltypes, test_vltypes, cleanup_vltypes, Variable-Length
Datatypes, NULL);
--- ./test/big.c.orig 2012-05-09 17:05:49.0 +0200
+++ ./test/big.c2012-06-22 11:26:13.954168044 +0200
@@ -793,7 +793,7 @@ main (int ac, char **av)
if (testvfd(SEC2_VFD) != 0)
goto error;
if (testvfd(STDIO_VFD) != 0)
-goto error;
+HDfprintf(stderr, Test for stdio fails on arm as expected.\n);
/* End with normal exit code */
return 0;
--- test/Makefile.am.orig 2012-05-09 17:05:49.0 +0200
+++ test/Makefile.am2012-06-22 11:27:02.944607103 +0200
@@ -41,8 +41,8 @@ TEST_PROG=testhdf5 lheap ohdr stab gheap
dtypes dsets cmpd_dset filter_fail extend external efc objcopy
links unlink \
big mtime fillval mount flush1 flush2 app_ref enum \
set_extent ttsafe \
- getname vfd ntypes dangle dtransform reserved cross_read \
- freespace mf btree2 fheap file_image
+
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2012-05-29 11:43:46
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes2012-03-12
20:13:55.0 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-05-29
11:43:47.0 +0200
@@ -1,0 +2,7 @@
+Mon May 28 15:05:43 UTC 2012 - ocef...@gmail.com
+
+- Update to 1.8.9
+* Changes documented here:
+ http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
+
+---
Old:
hdf5-1.8.8.tar.bz2
New:
hdf5-1.8.8-tstlite.patch
hdf5-1.8.9.tar.bz2
hdf5-ph5diff.patch
Other differences:
--
++ hdf5.spec ++
--- /var/tmp/diff_new_pack.gCj1wn/_old 2012-05-29 11:43:49.0 +0200
+++ /var/tmp/diff_new_pack.gCj1wn/_new 2012-05-29 11:43:49.0 +0200
@@ -20,7 +20,7 @@
%define libname libhdf5
Name: hdf5
-Version:1.8.8
+Version:1.8.9
Release:0
Summary:A general purpose library and file format for storing
scientific data
License:BSD-3-Clause
@@ -30,9 +30,16 @@
Source1:h5comp
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
+Patch2: hdf5-1.8.8-tstlite.patch
+# Fix typo bug in parallel h5diff
+Patch3: hdf5-ph5diff.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
-BuildRequires: gcc-c++ gcc-fortran krb5-devel openssl-devel zlib-devel
BuildRequires: fdupes
+BuildRequires: gcc-c++
+BuildRequires: gcc-fortran
+BuildRequires: krb5-devel
+BuildRequires: openssl-devel
+BuildRequires: zlib-devel
%description
HDF5 is a general purpose library and file format for storing scientific data.
@@ -110,6 +117,11 @@
%setup -q
%patch0 -p1 -b .LD_LIBRARY_PATH
%patch1 -b .non_void_return
+%ifarch ppc64 s390x
+# the tstlite test fails with stack smashing detected on these arches
+%patch2 -p1 -b .tstlite
+%endif
+%patch3 -p1 -b .ph5diff
#This should be fixed in 1.8.7
find \( -name '*.[ch]*' -o -name '*.f90' -o -name '*.txt' \) -exec chmod -x {}
+
++ hdf5-1.8.8-tstlite.patch ++
diff -up hdf5-1.8.8/hl/fortran/test/Makefile.am.tstlite
hdf5-1.8.8/hl/fortran/test/Makefile.am
--- hdf5-1.8.8/hl/fortran/test/Makefile.am.tstlite 2011-12-21
17:27:14.0 +0100
+++ hdf5-1.8.8/hl/fortran/test/Makefile.am 2011-12-21 17:27:29.0
+0100
@@ -33,7 +33,7 @@ else
endif
# Our main target, the test programs
-TEST_PROG=tstds tstlite tstimage tsttable
+TEST_PROG=tstds tstimage tsttable
check_PROGRAMS=$(TEST_PROG)
LDADD= $(LIBH5F_HL) $(LIBH5F) $(LIBH5_HL) $(LIBHDF5)
diff -up hdf5-1.8.8/hl/fortran/test/Makefile.in.tstlite
hdf5-1.8.8/hl/fortran/test/Makefile.in
--- hdf5-1.8.8/hl/fortran/test/Makefile.in.tstlite 2011-12-21
17:27:21.0 +0100
+++ hdf5-1.8.8/hl/fortran/test/Makefile.in 2011-12-21 17:27:37.0
+0100
@@ -409,7 +409,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.c
f1tab.h5 tstds.h5
# Our main target, the test programs
-TEST_PROG = tstds tstlite tstimage tsttable
+TEST_PROG = tstds tstimage tsttable
LDADD = $(LIBH5F_HL) $(LIBH5F) $(LIBH5_HL) $(LIBHDF5)
# Source files for the programs
++ hdf5-1.8.8.tar.bz2 - hdf5-1.8.9.tar.bz2 ++
145863 lines of diff (skipped)
++ hdf5-ph5diff.patch ++
diff -up hdf5-1.8.8/tools/lib/h5diff.c.ph5diff hdf5-1.8.8/tools/lib/h5diff.c
--- hdf5-1.8.8/tools/lib/h5diff.c.ph5diff 2011-11-07 15:11:35.0
-0700
+++ hdf5-1.8.8/tools/lib/h5diff.c 2012-02-09 12:14:59.788422152 -0700
@@ -1391,7 +1391,7 @@ hsize_t diff_match(hid_t file1_id, const
options-not_cmp = options-not_cmp | nFoundbyWorker.not_cmp;
busyTasks--;
} /* end if */
-else if(Status.MPI_TAG == MPI_TAG_TOK_RETURN)
+else if(Status.MPI_TAG == MPI_TAG_DONE)
{
MPI_Recv(nFoundbyWorker, sizeof(nFoundbyWorker), MPI_BYTE,
Status.MPI_SOURCE, MPI_TAG_DONE, MPI_COMM_WORLD, Status);
nfound += nFoundbyWorker.nfound;
--
To unsubscribe, e-mail: opensuse-commit+unsubscr...@opensuse.org
For additional commands, e-mail: opensuse-commit+h...@opensuse.org
commit hdf5 for openSUSE:Factory
Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2012-03-09 21:23:35
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
Package is hdf5, Maintainer is pgaj...@suse.com
Changes:
New Changes file:
--- /dev/null 2012-03-04 14:46:25.491534019 +0100
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-03-09
21:23:36.0 +0100
@@ -0,0 +1,250 @@
+---
+Sun Feb 19 04:46:42 UTC 2012 - ocef...@gmail.com
+
+- Removed Fixup headers and scripts for multiarch.
+
+---
+Wed Nov 30 09:02:37 UTC 2011 - jeng...@medozas.de
+
+- Remove redundant/unwanted tags/section (cf. specfile guidelines)
+- Use %_smp_mflags for parallel building
+- Accurate rpmgroup selection for shared library packages
+
+---
+Tue Nov 29 20:05:19 UTC 2011 - ocef...@gmail.com
+
+- un-commented --with-pthread and --with-ssl.
+
+---
+Mon Nov 28 14:34:24 UTC 2011 - ocef...@gmail.com
+
+- Update to 1.8.8
+ * Add patch to avoid setting LD_LIBRARY_PATH
+ * Add patch hdf5-non_void_return.patch
+ * Fixed non_void_return (thanks to Boris Manojlovic).
+ * Drop tstlite patch
+ * drop ppc64 longdouble patch, not required anymore
+ * Catch up with some Fedora modifications
+- Add rpm macro %%{_hdf5_version} for convenience
+ * No Fortran modules for opensuse 11.4 (Do not pass make check)
+
+ New Features
+
+
+Configuration
+-
+- Added the --enable-fortran2003 flag to enable Fortran2003 support
+ in the HDF5 Fortran library. The flag should be used along with the
+ --enable-fortran flag and takes affect only when the Fortran compiler
+ is Fortran2003 compliant. (EIP - 2011/11/14)
+- Added checks for clock_gettime and mach/mach_time.h to both configure and
+ CMake. This will support the move from gettimeofday to clock_gettime's
+ monotonic timer in the profiling code in a future release.
+ (DER - 2011/10/12)
+
+Library
+---
+- The Windows VFD code has been removed with the exception of the functions
+ which set it (H5Pset_fapl_windows, for example). Setting the Windows
+ VFD now really sets the SEC2 VFD. The WINDOWS_MAX_BUF and
+ WINDOWS_USE_STDIO configuration options and #defines have also been
+ removed. NOTE: Since the Windows VFD was a clone of the SEC2 VFD, this
+ change should be transparent to users.
+ (DER - 2011/10/12 - HDFFV-7740, HDFFV-7744)
+- H5Tcreate now supports the string type (fixed-length and variable-
+ length). (SLU - 2011/05/20)
+
+Parallel Library
+
+- Added new H5Pget_mpio_actual_chunk_opt_mode and
+ H5Pget_mpio_actual_io_mode API routines for querying whether/how
+ a collective I/O operation completed. (QAK - 2011/10/12)
+
+Tools
+-
+- None
+
+High-Level APIs
+---
+- Added the following Fortran wrappers for the Dimension Scale APIs:
+h5dsset_scale_f
+h5dsattach_scale_f
+h5dsdetach_scale_f
+h5dsis_attached_f
+h5dsis_scale_f
+h5dsset_label_f
+h5dsget_label_f
+h5dsget_scale_name_f
+h5dsget_num_scales_f
+ (EIP for SB - 2011/10/13 - HDFFV-3797)
+
+Fortran API
+---
+- The HDF5 Fortran library was enhanced to support the Fortran 2003
standard.
+ The following features are available when the HDF5 library is configured
+ using the --enable-fortran and --enable-fortran2003 configure flags AND
+ if the Fortran compiler is Fortran 2003 compliant:
+
+ - Subroutines overloaded with the C_PTR derived type:
+ h5pget_f
+ h5pget_fill_value_f
+ h5pinsert_f
+ h5pregister_f
+ h5pset_f
+ h5pset_fill_value_f
+ h5rcreate_f
+ h5rderefrence_f
+ h5rget_name_f
+ h5rget_obj_type_f
+ - Subroutines overloaded with the C_PTR derived type
+and simplified signatures:
+ h5aread_f
+ h5awrite_f
+ h5dread_f
+ h5dwrite_f
+ - New subroutines
+ h5dvlen_reclaim_f
+ h5literate_by_name_f
+ h5literate_f
+ h5ovisit_f
+ h5tconvert_f
+ h5pset_nbit_f
+ h5pset_scaleoffset_f
+ - Subroutines with additional optional parameters:
+ h5pcreate_class_f
+ (EIP - 2011/10/14)
+
+C++ API
+---
+- None
+
+---
+Thu Jun 2 20:39:35 UTC 2011 -
