Re: [Owlim-discussion] Building a URI from a SPARQL query

2011-08-24 Thread Barry Norton
to a literal, but it's not producing a result in a SPARQL construct query - no error either... m. On Wed, Aug 24, 2011 at 6:10 PM, Barry Norton barrynor...@gmail.com mailto:barrynor...@gmail.com wrote: Not sure what you mean there. You mean a variable that's not bound to a literal

Re: [Owlim-discussion] Java Heap error while loading

2011-09-14 Thread Barry Norton
Did you chunk them, or are you trying to load all triples in one transaction? Barry On 14.09.2011 20:47, Kyle Johnson wrote: We're trying to load one billion triples into OWLIM-SE 4.2 and are running into heap issues. Out of one billion, we can typically load about 700 million then get

[Owlim-discussion] Lucene search interaction with sameAs

2011-09-22 Thread Barry Norton
If I have the following information: kit:barry foaf:givenName Barry; foaf:familyName Norton; owl:sameAs ontotext:barry2. ontotext:barry2 foaf:nick Barry2. Then (with inference/optimisation) I will get: SELECT ?nick ?family where {kit:barry foaf:nick ?nick;

Re: [Owlim-discussion] DESCRIBE query does not accept LIMIT.

2011-10-06 Thread Barry Norton
by ((TupleQuery) query).evaluate() ? Regards, Jerven On 10/06/2011 02:37 PM, Barry Norton wrote: Doesn't it modify the set of bindings, not the graphs that are produced around them, in CONSTRUCT and DESCRIBE? So if you said, for instance: DESCRIBE ?x WHERE {?x a foaf:Person} LIMIT 100 You

Re: [Owlim-discussion] DESCRIBE query does not accept LIMIT.

2011-10-06 Thread Barry Norton
to programmatically modify a Tuple or GraphQuery object to add a limit and an offset. The closest I get is using iterators and loop to start or end. Am I missing a something at the Sesame level? Or is there no interface that enables me to do this. Regards, Jerven On Oct 6, 2011, at 4:14 PM, Barry Norton wrote

[Owlim-discussion] Fwd: [Sesame] suspect insert behavior with blank nodes in template

2012-02-16 Thread Barry Norton
Seen earlier in OWLIM (by Lyndon), this is now reported in Sesame. Barry Original Message Subject:[Sesame] suspect insert behavior with blank nodes in template Date: Thu, 16 Feb 2012 13:01:18 +0100 From: Alessandro Bollini alessandro.boll...@gmail.com Reply-To:

Re: [Owlim-discussion] OWLIM 4.3 and SPARQL 1.1 property path

2012-03-21 Thread Barry Norton
Hi, Fabian, Is ?text bound to a literal when it succeeds in the two queries at the top? Barry On 20/03/2012 14:13, Fabian Cretton wrote: Hi, I do have a strange behaviour that I don't understand, working with OWLIM 4.3. I think there is no need to provide detailed information about the

Re: [Owlim-discussion] CRITICAL FAILURE !!! The database restorer tool has already failed once before to perform image restore.

2012-03-31 Thread Barry Norton
Guys, how are you shutting down your database that it needs to be recovered so often? And are you interrupting the recovery process? Barry On 31/03/2012 20:44, Blasetti, Luciano (CIOK) wrote: Hi All, I also experienced quite frequently this issue on a tomcat instance running only

Re: [Owlim-discussion] OWL inferred statements for SPARQL

2012-04-30 Thread Barry Norton
Any non-empty standard ruleset (including RDFS, where this is defined) will include this, so I'm wondering if, when you set up your repository, you chose the empty ruleset? Barry On 30/04/2012 14:02, Ward Blondé wrote: Dear OWLIM developers, I am trying to find out which reasoning

Re: [Owlim-discussion] TBox queries

2012-07-12 Thread Barry Norton
+1 But how does such a query work with forward-chaining? (Since the class is unknown, therefore hasn't been subjected to the inference rules before) My first idea was that maybe the class if asserted, reasoning enacted, the query answered, then the assertion rolled back... but that's not

Re: [Owlim-discussion] direct super class / subclass using SPARQL

2012-09-17 Thread Barry Norton
Sorry to jump in (hope I'm not missing something obvious), but you seem to be forcing a graph query into a relational (SELECT) answer. Don't you just want to do a CONSTRUCT query and navigate the subgraph? Barry On 17/09/2012 15:17, Stefano Ortona wrote: Hello, about the direct

Re: [Owlim-discussion] Inferences with named graph

2012-09-28 Thread Barry Norton
OWLIM, as Sesame, infers triples into the unnamed graph. You've exactly illustrated why: the triple b rdf:type y 'belongs' neither to ng1 nor ng2. Furthermore, for good operational reasons, no truth maintenance information is preserved. The inferred triple (which may have justifications

Re: [Owlim-discussion] Inferences with named graph

2012-09-28 Thread Barry Norton
, 2012 15:23 Subject: [Owlim-discussion] Inferences with named graph To: 'Barry Norton' barry.nor...@ontotext.com, owlim-discussion@ontotext.com Dear all, this makes me raise another question: is there any specification in the RDF-world about relationship between inference and named graphs, which

Re: [Owlim-discussion] Inferences with named graph

2012-10-03 Thread Barry Norton
. Will this last triple be materialised too in the unnamed graph? Best, AZ 2012/9/28 Barry Norton barry.nor...@ontotext.com: OWLIM, as Sesame, infers triples into the unnamed graph. You've exactly illustrated why: the triple b rdf:type y 'belongs' neither to ng1 nor ng2. Furthermore, for good

Re: [Owlim-discussion] Welcome to the Owlim-discussion mailing list

2012-10-09 Thread Barry Norton
For some reason the 'autodetect syntax' in the Sesame Workbench is getting confused and trying to parse this as Turtle. Presuming that you're trying to use that interface, can you please re-check by explicitly selecting 'RDF/XML' from the dropdown titled 'Data format'. Barry On

Re: [Owlim-discussion] OWLIM SE Installation Issue

2012-10-31 Thread Barry Norton
Nazmul, which installation guide are you following? These days, presuming you're using OWLIM 5 (or even 4), there's no need to deal with jars, one simply places the .war files, from sesame_owlim, into tomcat/webapps. Please see:

Re: [Owlim-discussion] Rép. : Re: OWLIM 5.3 - SPARQL and math functions

2012-11-21 Thread Barry Norton
With apologies for slightly missing your point, with my previous answer, talking of standards (which SPIN isn't), note what RIF also omits: http://www.w3.org/2005/rules/wiki/DTB#Numeric_Functions_and_Predicates Barry On 21/11/2012 16:52, Barry Norton wrote: No, the standard SPARQL 1.1

Re: [Owlim-discussion] filtering for string values in sparql

2012-11-30 Thread Barry Norton
That you didn't add STR(?patientid) to the FILTER suggests that there's no datatype - why are you adding the datatype to the latter query and expecting a match? Barry On 30/11/2012 16:26, Bill Duncan wrote: I have question concerning how to match string values in labels using a sparql

Re: [Owlim-discussion] settings for ordering triples on owlim se

2012-11-30 Thread Barry Norton
Order on which component? On subjects / predicates? On objects? If the latter, are they all literals? If so, are they data-typed? Perhaps it would be possible to share your query? Barry On 30/11/2012 16:31, Bill Duncan wrote: Our triple store (owlim se) has around a million triples. The

Re: [Owlim-discussion] SPARQL XML results

2012-12-17 Thread Barry Norton
Unless I misunderstood you refer to the following provision of the SPARQL XML Results standard: If, for a particular solution, a variable is/unbound/, no|binding|element for that variable is included in the|result|element.

Re: [Owlim-discussion] SPARQL XML results

2012-12-17 Thread Barry Norton
...@gmail.com Date: Mon, Dec 17, 2012 21:13 Subject: [Owlim-discussion] SPARQL XML results To: Barry Norton barry.nor...@ontotext.com Cc: owlim-discussion@ontotext.com OK, another issue. If I get no results, I'm seeing the following XML when my query returns no results: ?xml-stylesheet type='text/xsl' href

Re: [Owlim-discussion] {Disarmed} Re: missing owl:sameAs triples

2012-12-19 Thread Barry Norton
it is unaffected. Tobe clear we load the data using ruleset=none. Which might impact the scenario. The query used to work its just in the latest version that I notice it being gone. Regards, Jerven On 12/19/2012 11:03 AM, Barry Norton wrote: Jerven, using owlim-se-5.3.5689 I just executed

Re: [Owlim-discussion] {Disarmed} Re: missing owl:sameAs triples

2012-12-19 Thread Barry Norton
/19/2012 11:38 AM, Barry Norton wrote: Thanks for the clarification - I believe Vassil has answered the question in the mean time, this is down to the way the data is loaded and exposed in LinkedLifeData. OWLIM does index the equivalence in the raw dataset and, under appropriate conditions

Re: [Owlim-discussion] {Disarmed} Re: missing owl:sameAs triples

2012-12-19 Thread Barry Norton
On 19/12/12 12:42, Barry Norton wrote: Jerven, confirmed I can reproduce your problem thus: $ wget ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/citations.rdf.gz $ gunzip citations.rdf.gz $ curl -X POST -H Content-Type:application/rdf+xml -T citations.rdf http://localhost:8080

Re: [Owlim-discussion] {Disarmed} Re: missing owl:sameAs triples

2012-12-19 Thread Barry Norton
are another issue, on the uniprot rdf production site. Not for you to worry about, in any case will be fixed by the next uniprot data release on the 9th of January. Thanks for looking into the owl:sameAs issue. Regards, Jerven On 12/19/2012 02:47 PM, Barry Norton wrote: Further, I converted to NTriples

Re: [Owlim-discussion] Using proximity in Lucene Search in OWLIM

2013-02-04 Thread Barry Norton
The beauty of the Lucene search is that you can combine it with graph patterns, e.g. (presuming you created myIndex): SELECT ?name {[] luc:myIndex eugene male; :hasName ?name} Barry On 04/02/13 09:00, Siow Boon Lin Eugene wrote: Hi, As I understand, when I create the Lucene index, I

Re: [Owlim-discussion] Using proximity in Lucene Search in OWLIM

2013-02-05 Thread Barry Norton
The blank node (1) just means I don't care what the subject is (it will match a blank node or a URI-identified resource - it cannot be a literal as it's in subject position), just that it's the centre of the molecule and has a name attached to it. I'm not sure you can set the parameters and

Re: [Owlim-discussion] Query strange behavior

2013-02-14 Thread Barry Norton
Marek, I'm struggling to understand your query. You have a clause GRAPH http://www.ontotext.com/explicit { ?value rdf:type ?key } but if the INSERT represents all of your explicit statement there are none with explicit classification (i.e. pred=type). Are you saying that: SELECT DISTINCT

Re: [Owlim-discussion] Query strange behavior

2013-02-14 Thread Barry Norton
*From:* Barry Norton barry.nor...@ontotext.com *To:* owlim-discussion@ontotext.com *Sent:* Thursday, 14 February 2013, 12:10 *Subject:* Re: [Owlim-discussion] Query strange behavior Marek, I'm struggling to understand your query. You have a clause GRAPH

Re: [Owlim-discussion] Query strange behavior

2013-02-14 Thread Barry Norton
://www.ontotext.com/explicit { ?value rdf:type ?key } . } In the absence of your instance data I remain, therefore, unable to reproduce an issue. Barry On 14/02/13 11:26, Barry Norton wrote: But that's what I mean, that's not reproducable - I'm missing some instance data. I assumed OWL

Re: [Owlim-discussion] Can't get Online Backup and Restore to work in OWLIM Enterprise

2013-02-14 Thread Barry Norton
Tomas, which version/build of OWLIM-Enterprise are you using, and on which platform (OS)? Barry On 14/02/13 15:46, Tomas Vileinis(kis wrote: Hi list/devs, I've tried everything, but the online backup mechanism doesn't seem to work for me. As per instructions outlined in documentation:

Re: [Owlim-discussion] Can't get Online Backup and Restore to work in OWLIM Enterprise

2013-02-14 Thread Barry Norton
? Cheers, Barry On 14/02/13 16:02, Tomas Vileiniškis wrote: Sorry, forgot to include these in the first email. I'm using owlim-enterprise-5.3.5689 and Win Server 2008 R2 Standart 64-bit. Tomas On Thu, Feb 14, 2013 at 5:58 PM, Barry Norton barry.nor...@ontotext.com mailto:barry.nor

Re: [Owlim-discussion] [Sesame] Few features request for upcoming 2.7

2013-02-19 Thread Barry Norton
not edit the file (rather a copy) unless you're sure those are the rules you want executed. Barry *From:* Barry Norton barry.nor...@ontotext.com *To:* owlim-discussion@ontotext.com *Sent:* Tuesday, 19 February 2013, 12

Re: [Owlim-discussion] [Sesame] Rép. : Re: Number of Triples - Sesame

2013-02-28 Thread Barry Norton
Fabian, I've copied your mail to the OWLIM discussion list. I don't think there's any contradiction to say designed for 100MTriple volumes but hard limit 2BTriples. A city car is designed to tootle around at 60 kilometers an hour, but can also be rated with a top speed; say, 150kph.

Re: [Owlim-discussion] [Sesame]Rép. : Re: Number of Triples - Sesame

2013-02-28 Thread Barry Norton
. Hence my question as I always thought that OWLIM-lite would not work for more than 100 million triples. Thank you if you can find out more precision about that (you said you did post on the OWLIM discussion) Fabian Barry Norton barry.nor...@ontotext.com 28.02.2013 12:15 Fabian, I've copied

Re: [Owlim-discussion] setting Ruleset owlim repository using sesame workbench

2013-03-07 Thread Barry Norton
Carlo, I'd personally avoid using the Workbench if you've significant parameters to set. In the getting-started/ folder of the distribution you'll find a set of parameters in owlim.ttl, which you can copy and edit. One can either instantiate a repository these with using GettingStarted.jar

Re: [Owlim-discussion] setting Ruleset owlim repository using sesame workbench

2013-03-07 Thread Barry Norton
one week time), the only parameter i need is ruleset as i need to use customized rules. Any suggestion using sesame workbench? Carlo --- *Gio 7/3/13, Barry Norton /barry.nor...@ontotext.com/* ha scritto: Da: Barry Norton barry.nor...@ontotext.com Oggetto: Re: [Owlim-discussion] setting

Re: [Owlim-discussion] setting Ruleset owlim repository using sesame workbench

2013-03-07 Thread Barry Norton
parameters that can not be changed once the repository is created, e.g. the rule-set (in the case of OWLIM-SE). I read it after i run the query, but it is working!!!. Many Thanks, Regards, Carlo --- Gio 7/3/13, Barry Norton barry.nor...@ontotext.com ha scritto: Da: Barry Norton barry.nor

Re: [Owlim-discussion] (no subject)

2013-03-13 Thread Barry Norton
#; ; owlim:repository-type file-repository ; owlim:console-thread false ] ]. Thank you very much for your help, please. Best, Carlo --- *Gio 7/3/13, Barry Norton /barry.nor...@ontotext.com/* ha scritto: Da: Barry Norton barry.nor...@ontotext.com Oggetto: Re: [Owlim-discussion] setting

Re: [Owlim-discussion] (no subject)

2013-03-13 Thread Barry Norton
://www.tlo.ics.forth.gr/TLO_entity#belongsTo 18:08:45 2 result(s) in 345ms. Why not ?z Any help on this?Please. Regards, Carlo --- *Mer 13/3/13, Barry Norton /barry.nor...@ontotext.com/* ha scritto: Da: Barry Norton barry.nor...@ontotext.com Oggetto: Re: A: Carlo Allocca carloallo

Re: [Owlim-discussion] (no subject)

2013-03-13 Thread Barry Norton
suggested. again Many Thanks, Regards, Carlo --- Mer 13/3/13, Barry Norton barry.nor...@ontotext.com ha scritto: Da: Barry Norton barry.nor...@ontotext.com Oggetto: Re: A: Carlo Allocca carloallo...@yahoo.it Cc: owlim-discussion@ontotext.com Data: Mercoledì 13 marzo 2013, 20:25 If I understand

Re: [Owlim-discussion] Restful APIs for Owlim?

2013-03-19 Thread Barry Norton
On 18 March 2013 19:25, Barry Norton barry.nor...@ontotext.com mailto:barry.nor...@ontotext.com wrote: Hi, Tope. Your problem is the media type (and the path). SELECT queries return: application/sparql-results+xml application/sparql-results+json text/csv text/tab

Re: [Owlim-discussion] problem with owlim lite and not being able to read repository

2013-04-30 Thread Barry Norton
Danica, I'm not sure if it explains your problem, but you're not closing all your objects: http://trippi.sourceforge.net/api/org/trippi/impl/sesame/SesameTupleIterator.html#close() http://trippi.sourceforge.net/api/org/trippi/impl/sesame/SesameTupleIterator.html#close%28%29 Barry On