Re: Bug report: csv parsing seem to be incorrectly initialized

On Tue, Nov 15, 2022 at 1:21 AM Istvan Albert wrote: > First of all, thanks for this tool! It is the most amazing tool ever invented > for bioinformatics! It is leaps and bounds better than Snakemake Patterns, or > NextFlow automation etc. My students and I can get 100x more done with >

Bug report: csv parsing seem to be incorrectly initialized

Hello, First of all, thanks for this tool! It is the most amazing tool ever invented for bioinformatics! It is leaps and bounds better than Snakemake Patterns, or NextFlow automation etc. My students and I can get 100x more done with parallel than all other tools combined. Here is a bug I

Bug report

When I try to optimise some jpg files, using this command line: parallel -j4 --sshlogin $SERVER1,: --trc {} jpegoptim ::: *.jpg It prints out an error message saying that there is a bug: parallel: This should not happen. You have found a bug. Please follow

Re: bug report (parallel --slf feature)

> #parallel --halt soon,fail=1 --gnu --no-notice --slf /usr/hpc-bio/mpi/slf.silent.nnode4 > # cat /usr/hpc-bio/mpi/slf.silent.nnode4 > 12/T640 It was caused by a bug: GNU Parallel (wrongly) assumed hosts could not contain UPPERCASE letters. Try the newest release. /Ole

bug report (parallel --slf feature)

Hi, a bug report (--slf feature) #parallel --halt soon,fail=1 --gnu --no-notice --slf /usr/hpc-bio/mpi/slf.silent.nnode4 parallel: This should not happen. You have found a bug. Please follow https://www.gnu.org/software/parallel/man.html#REPORTING-BUGS Include this in the report: * The version

bug report (parallel --slf feature)

Hi, a bug report (--slf feature) #parallel --halt soon,fail=1 --gnu --no-notice --slf /usr/hpc-bio/mpi/slf.silent.nnode4 parallel: This should not happen. You have found a bug. Please follow https://www.gnu.org/software/parallel/man.html#REPORTING-BUGS Include this in the report: * The version

Re: bug report

On Mon, Mar 7, 2022 at 3:10 PM Julien Gamba wrote: > Here is the message I get: > * The version number: 20161222 > * The bugid: swap_activity_file-r : > I hope there is enough information here! Unfortunately this is not enough to see what is going on. > Happy to give more details if needed.

Re: bug report

You may also want to update Parallel since the version you have is so old. Joe Mar 7, 2022 11:02:21 Juan Sierra Pons : I would look for the oom killer in dmesg/journal logs https://sdk.rackspace.com/support/how-to/linux-out-of-memory-killer/ Hope it helps Best regards El lun, 7 mar 2022

Re: bug report

I would look for the oom killer in dmesg/journal logs https://sdk.rackspace.com/support/how-to/linux-out-of-memory-killer/ Hope it helps Best regards El lun, 7 mar 2022 15:08, Julien Gamba escribió: > Hello, > > I am using parallel to process a large amount of files. This morning I > found

bug report

Hello, I am using parallel to process a large amount of files. This morning I found that it has crashed during the night. Here is the message I get: parallel: This should not happen. You have found a bug. Please contact and include: * The version number: 20161222 * The bugid:

Re: Bug report from Galaxy project

Hi Yuval, I am assuming you are enrolled in a Coursera course that is using Galaxy on Jetstream VMs for the instruction. Please see https://lists.gnu.org/archive/html/parallel/2021-03/msg00018.html (short URL: https://tinyurl.com/ydqm4mdg) You did the right thing, but in this situation, you

Bug report from Galaxy project

Hi! I’ve encountered a bug that said to report it to you- Fatal error: Exit code 255 () The version number: 20170422 The bugid: fdr: Cannot open /jetstream/scratch0/main/jobs/34290529/_job_tmp/par0UZs9.par This is a 61.7 GB Bam file, I can forward it to you if needed. Thx, Yuval - - - Yuval

Re: Bug report

ion of parallel -- > then it is still a bug that warrants reporting. You are right but you should report it to the Ubuntu maintainer for 16.04. You can fill the bug report at: https://bugs.launchpad.net/ubuntu/+source/parallel/+filebug Remember to choose "xenial (16.04LTS)" Regards Martin

Re: Bug report

If Canonical gives this promise and it or its package maintainers cannot keep it (namely: updating a non-critical package), than this is not a bug which warrants reporting a developer (or many) which went on in the meantime but to the respective ubuntu maintainer. Or? On 11/28/18 4:13 PM,

Re: Bug report

I will do that. However, I will also point out that THIS is the version that is installed with a simple apt-get in Ubuntu 16.04 -- a LTS system. So if the most recent updates to 16.04 breaks THIS version of parallel -- then it is still a bug that warrants reporting. -- J On Wed, Nov 28, 2018

Bug report

Hello, I have used your code for a while now without any issues, but all of a sudden it has started throwing an error message at me. I am writing as directed in the error message itself. Even just running one of the examples in the man document produces the same error: parallel: This

Bug report

* The version number: 20161123 * The bugid: swap_activity_file-r * The command line being run parallel -j -8 --resume-failed --joblog prepare_bams_job.log --memfree 20G --noswap --workdir `pwd` --env foo foo ::: $FILES ::: $ALLELES where foo is a bash function that invokes and aligner script. *

Re: Parallel bug report

On Mon, Sep 5, 2016 at 2:03 AM, Argent9660 wrote: > Parallel --version (error) > > The version number: 20160722 > The bugid: pid_parentpid_cmd for android missing I need a command on android that will produce: PID PPID CMD 1 0 /sbin/init 2 0 [kthreadd] 3 2

Re: Bug Report

Hi James. Thanks for the error report. The minimal reproducible error seems to be: parallel --filter-hosts -S lo echo ::: 1 This is now fixed in git. /Ole On Tue, Jun 25, 2013 at 8:01 PM, James George Dunham james.dun...@lyle.smu.edu wrote: As per the request, here is information on

Re: Bug report

On Fri, Aug 31, 2012 at 10:10 PM, Paul Dubuc w...@paul.dubuc.org wrote: Command output is: * The bugid: host check unmatched short jobline: 4 : cat parallel.args | /projects/pmd25/parallel/bin/parallel --filter-hosts --joblog ./parallel.log --wd `pwd` --slf ./parallel.logins When looking at