Re: Parallel script with variable name

2019-02-28 Thread Ernst, Kevin
Hi Lindsey, If I’m understanding you correctly, then {} (a pair of curly braces) is what you want. It’s the “variable” that holds the names of the things coming in on parallel‘s standard input, and it gets a different value, one for each input line, for each invocation of lots_of_stuff. The

Re: How to make git colorise output with parallel?

2020-07-02 Thread Ernst, Kevin
Hi Gabriel, hope you're well. My answer is below the quoted part; you may have to click a "…" to reveal it, depending on your email client. On 01.07.20 at 22:13, Gabriel Ostrolucky wrote: > fd '.git$' --hidden -t d|parallel git -C {//} pull > > Why does this happen, and what can I do to

Re: Inserting Parallel argument into command script

2020-06-19 Thread Ernst, Kevin
(reply below) On 18.06.20 at 19:49, Miriam Dixon wrote: > parallel runSim.sh --projAngles {1} ::: 0 45 90 135 > > This seemed to work, in that it started my runSim.sh, but it didn't > use the value from projAngles within the script, > time=$(bc -l <<< "$projAngles*$timePerProjection") > > Is

Re: Error with Galaxy FreeBayes

2021-03-24 Thread Ernst, Kevin
On 23.03.21 at 19:48, Ole Tange wrote: > All your reports include a dir called /jetstream. This leads me to > suspect the error is dependent on your environment or distribution. So > you should follow instructions in the link below and include the part > about the environment. Hi all, For what

Re: Bug report from Galaxy project

2021-03-31 Thread Ernst, Kevin
Hi Yuval, I am assuming you are enrolled in a Coursera course that is using Galaxy on Jetstream VMs for the instruction. Please see https://lists.gnu.org/archive/html/parallel/2021-03/msg00018.html (short URL: https://tinyurl.com/ydqm4mdg) You did the right thing, but in this situation, you