Re: [Paraview] Reorientation of a volume
VTK's support for non axis aligned volumes is limited to the vtkStructuredGrid class. Like vtkImageData and vtkRectilinearGrid, it is used to represent topologically regular images and volumes. However the geometry is unconstrained in this class and you have to supply coordinates for every point. This implies even greater memory use. So what I suggest is load in your raw data in ParaView as normal then apply the python programmable filter or python calculator to: 1) change the type to vtkStructuredGrid 2) compute and populate a buffer with the correct coordinates for each point 3) use vtkStructuredGrid::SetPoints to tell the StructuredGrid to use that buffer as the data set's geometry David E DeMarle Kitware, Inc. RD Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Fri, Apr 6, 2012 at 5:22 AM, Claire Mouton claire.mou...@creatis.insa-lyon.fr wrote: Hi to all, I have a raw image for which the acquisition has not been done following the usual orientation. In other words, the image is not orientated following the usual orthogonal axes, but slightly in diagonal. The size of the image : 1340*1340*1560, representing 2,8 Go. Is it possible to modify its orientation and to save it with the modified orientation? Thanks for your help, Claire Mouton ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] ANN: ParaView 3.14.1 Available for download
Folks, ParaView 3.14.1 is now available for download (http://paraview.org/paraview/resources/software.php). This is bug fix release that includes fixes for ParaView 3.14.0. ParaView 3.14.1 clients can be used to connect with servers running ParaView 3.14.0 and vice-versa. Similarly, plugins built for ParaView 3.14.0 should generally work with ParaView 3.14.1. The issues that were fixed are as follows: - 0012924: Paraview 3.12.0 fails to build with zlib 1.2.6, invalid conversion from 'void*' to 'gzFile' - 0012956: Auto apply, variables don't show up. - 0012964: View Layout State issue - 0012969: pvsc option enumeration issues - 0012970: No way to use netcdf4 with system netcdf - 0012981: Bug in panning/scaling of top-right axes in charts - 0012983: HSCTH files not reading timesteps correctly - 0012984: cherrypick the fix in VTK of vtkPyramid.cxx compute gradient into ParaView - 0012991: Build problem with nmake and windows - 0012997: protoc generation doesn't work on Windows with nmake builds. - 0013012: Errors on FindData - 0013030: EnSight6Reader incorrect transient single file format and scalar per element - 0013033: problems with scalar bar - 0013048: ContourRepresentation can't override Intialize Detailed change log can be found at http://paraview.org/Bug/changelog_page.php?version_id=95. ParaView Team ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Qt QTWEBKIT library not found
JB Lennart Thanks for your advices. I'm still trying to build ParaView on CentOS 6.2. JB I recieved the patch file, but I can't understand the usage How to use the patch file? Lennart I couldn't find VTK_QT_USE_WEBKIT flag. Maybe we couldn't turn off QtWebKit on cmake. Then I'm also trying to build QtWebKit 2.2.0, but errors occur as below: cc1plus: warnings being treated as errors ../../../Source/JavaScriptCore/yarr/YarrPattern.cpp: In member function 'void JSC::Yarr::CharacterClassConstructor::putRange(UChar, UChar)': ../../../Source/JavaScriptCore/yarr/YarrPattern.cpp:127: error: comparison between signed and unsigned integer expressions ../../../Source/JavaScriptCore/yarr/YarrPattern.cpp:133: error: comparison between signed and unsigned integer expressions make[1]: *** [obj/release/YarrPattern.o] Error 1 When I built ParaView 3.12.0 on my Mac (10.7), it was extremely easy. I didn't prepare QtWebKit module, but the cmake process was finished successfully. I wonder how everyone build ParaView on Linux distributions? Magician On 2012/04/05, at 21:35, Biddiscombe, John A. wrote: if your Qt was not built with the web stuff lib then you need to remove all uses of it from paraview. I use the attached patch for pv3.14 You may need to set the Qt web lib to something valid to shut cmake up. JB -Original Message- From: paraview-boun...@paraview.org [mailto:paraview-boun...@paraview.org] On Behalf Of Magician Sent: 05 April 2012 13:26 To: paraview@paraview.org Subject: [Paraview] Qt QTWEBKIT library not found Hi. I'm trying to build ParaView 3.14.0 on clean-installed CentOS 6.2. I followed those steps on ParaView Wiki: http://paraview.org/Wiki/ParaView:Build_And_Install I already installed Python 2.7.2, Qt-Everywhere-Opensource 4.6.2, cmake 2.8.2 from sources on /usr/local. Then I did configure on ccmake, it only said: Qt QTWEBKIT library not found. Qt QTWEBKIT library not found. What could I do for this problem? It may be due to Qt's setting, but I'm not familiar with Qt. :( Magician ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Qt QTWEBKIT library not found
Since you're building Qt from source, try to reconfigure and build Qt with WebKit enabled. Your configure command for QT should look something like follows: ./configure -webkit -xmlpatterns any other params Then, before Qt starts building, it spits out a block of text saying what features were enabled/disabled. Pay close attention to that. Post that piece of test if needed. That should tell you if webkit was enabled or disabled. ParaView doesn't currently support not building with WebKit support (except for using John's patch). Utkarsh ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] [EXTERNAL] Re: Reorientation of a volume
Actually, there is a much easier solution. As of ParaView 3.14, the Transform filter works on both vtkImageData and vtkRectilinearGrid. Simply load your data in ParaView, and apply the Transform filter using whatever rotations you want. -Ken On 4/6/12 5:19 AM, David E DeMarle dave.dema...@kitware.com wrote: VTK's support for non axis aligned volumes is limited to the vtkStructuredGrid class. Like vtkImageData and vtkRectilinearGrid, it is used to represent topologically regular images and volumes. However the geometry is unconstrained in this class and you have to supply coordinates for every point. This implies even greater memory use. So what I suggest is load in your raw data in ParaView as normal then apply the python programmable filter or python calculator to: 1) change the type to vtkStructuredGrid 2) compute and populate a buffer with the correct coordinates for each point 3) use vtkStructuredGrid::SetPoints to tell the StructuredGrid to use that buffer as the data set's geometry David E DeMarle Kitware, Inc. RD Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Fri, Apr 6, 2012 at 5:22 AM, Claire Mouton claire.mou...@creatis.insa-lyon.fr wrote: Hi to all, I have a raw image for which the acquisition has not been done following the usual orientation. In other words, the image is not orientated following the usual orthogonal axes, but slightly in diagonal. The size of the image : 1340*1340*1560, representing 2,8 Go. Is it possible to modify its orientation and to save it with the modified orientation? Thanks for your help, Claire Mouton ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Molecular viz with PV?
Does it mean that nothing has been developped around PV to visualize molecules? From: stan1...@hotmail.fr To: paraview@paraview.org Date: Tue, 3 Apr 2012 13:23:41 +0200 Subject: [Paraview] Molecular viz with PV? Hello, I would like to get pointers on previous or current works on visualizing molecules and especially molecules dynamics with PV, any help? ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Molecular viz with PV?
On Tue, Apr 3, 2012 at 7:23 AM, Valdo Meyer stan1...@hotmail.fr wrote: Hello, I would like to get pointers on previous or current works on visualizing molecules and especially molecules dynamics with PV, any help? Hi, Last year a Google Summer of Code project added some new data types and utility classes for chemical structure visualization. We plan to add some new representations to ParaView at some point soon, along with some experimental work in ParaViewWeb for web visualization using the ParaView framework. We are looking at MD, and the best way to support some of those data structures in VTK and ParaView but there is nothing I can point you to that can be used right now. What MD file formats are you thinking of, what type of visualization/analysis are you hoping to do? I think more will be added, but there is not a specific project that is tasked with extending ParaView for molecular visualization. Hope that helps. Marcus ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] ANN: ParaView 3.14.1 Available for download
Greetings to all, The project for releasing _unofficial_ ParaView Development installs (mostly for Windows) - http://code.google.com/p/unofficial-paraview-dev-install/ - has been finally updated this week, just in time to be updated within a few hours of the official release of ParaView 3.14.1: * List of downloads: http://code.google.com/p/unofficial-paraview-dev-install/wiki/Downloads * List of development notes related to the updates made: o Notes for ParaView 3.12.0 http://code.google.com/p/unofficial-paraview-dev-install/wiki/Notes3120 o Notes for ParaView 3.14.0 http://code.google.com/p/unofficial-paraview-dev-install/wiki/Notes3140 o Notes for ParaView 3.14.1 http://code.google.com/p/unofficial-paraview-dev-install/wiki/Notes3141 In the notes are described the changes and brief steps for building one's own ParaView SuperBuild on Windows. These unofficial releases have not been subjected to through testing yet, so if anyone finds problems with them, please use our dedicated Issue Tracker for them: http://code.google.com/p/unofficial-paraview-dev-install/issues/list Brief summary of features: * 3 types of packages are provided: o The modified sources, in both tar.bz2 and 7z formats. o Self-extractable packages with headers, cmake files and library interfaces, i.e. the necessary development files. These are meant for complementing the official releases of ParaView. o Self-extractable packages with both the previous development files and the working ParaView + Open-MPI binaries. FYI: these are using Qt 4.6.3 in ParaView 3.14.*, instead of Qt 4.6.4; but it should still work, since Qt 4.6.4 should be a bug fix release and should be fully compatible symbol-wise... * A few options were added to the SuperBuild files: o Added ParaView_INSTALL_DEVELOPMENT to the main CMakeLists.txt file, for including the installation of the development files when installing ParaView. o Added ParaView_MPI_SUPERBUILD for choosing to use the system's MPI (auto-detect only), instead of the default ones on SuperBuild. The usage case scenario for this option is documented here: http://www.cfd-online.com/Forums/blogs/wyldckat/1203-paraview-3-12-0-superbuild-openfoam.html * List of code changes can be seen in the repository: http://code.google.com/p/unofficial-paraview-dev-install/source/detail?r=8ca38a1b4809448776414b2ed805604e4f2a5955repo=paraview3141 These changes aren't complete yet, since: * There is still work to be done for automating the installation/packaging process. * And the Silo project isn't automatically upgraded when using MSVC 2008 Express... the vcbuild application has to be used in an automated scenario with 2008 Express and it will probably require a somewhat ugly hack. Best regards, Bruno Santos at blueCAPE Lda PS: I hope this doesn't go top post... since a reply to this ANN seemed the best place to advertise this ;) On 06-04-2012 16:16, paraview-requ...@paraview.org wrote: Date: Fri, 6 Apr 2012 09:46:32 -0400 From: Utkarsh Ayachitutkarsh.ayac...@kitware.com Subject: [Paraview] ANN: ParaView 3.14.1 Available for download To: ParaViewparaview@paraview.org, ParaView Developers paraview-develop...@paraview.org Folks, ParaView 3.14.1 is now available for download (http://paraview.org/paraview/resources/software.php). This is bug fix release that includes fixes for ParaView 3.14.0. ParaView 3.14.1 clients can be used to connect with servers running ParaView 3.14.0 and vice-versa. Similarly, plugins built for ParaView 3.14.0 should generally work with ParaView 3.14.1. The issues that were fixed are as follows: - 0012924: Paraview 3.12.0 fails to build with zlib 1.2.6, invalid conversion from 'void*' to 'gzFile' - 0012956: Auto apply, variables don't show up. - 0012964: View Layout State issue - 0012969: pvsc option enumeration issues - 0012970: No way to use netcdf4 with system netcdf - 0012981: Bug in panning/scaling of top-right axes in charts - 0012983: HSCTH files not reading timesteps correctly - 0012984: cherrypick the fix in VTK of vtkPyramid.cxx compute gradient into ParaView - 0012991: Build problem with nmake and windows - 0012997: protoc generation doesn't work on Windows with nmake builds. - 0013012: Errors on FindData - 0013030: EnSight6Reader incorrect transient single file format and scalar per element - 0013033: problems with scalar bar - 0013048: ContourRepresentation can't override Intialize Detailed change log can be found at http://paraview.org/Bug/changelog_page.php?version_id=95. ParaView Team -- http://www.bluecape.com.pt blueCAPE Lda - CAE solutions Rua Fonte dos Corvos, n.29 Casais da Serra 2665-305 Milharado PORTUGAL (+351) 219 755 345 Tel. (+351) 219 755 345 Fax (+351) 963 440 984 Mob. ___ Powered by www.kitware.com Visit
Re: [Paraview] ANN: ParaView 3.14.1 Available for download
That's great! Thanks for all the hard work. Utkarsh Sent from my iPad On Apr 6, 2012, at 5:18 PM, Bruno Santos bruno.san...@bluecape.com.pt wrote: Greetings to all, The project for releasing unofficial ParaView Development installs (mostly for Windows) - http://code.google.com/p/unofficial-paraview-dev-install/ - has been finally updated this week, just in time to be updated within a few hours of the official release of ParaView 3.14.1: List of downloads: http://code.google.com/p/unofficial-paraview-dev-install/wiki/Downloads List of development notes related to the updates made: Notes for ParaView 3.12.0 Notes for ParaView 3.14.0 Notes for ParaView 3.14.1 In the notes are described the changes and brief steps for building one's own ParaView SuperBuild on Windows. These unofficial releases have not been subjected to through testing yet, so if anyone finds problems with them, please use our dedicated Issue Tracker for them: http://code.google.com/p/unofficial-paraview-dev-install/issues/list Brief summary of features: 3 types of packages are provided: The modified sources, in both tar.bz2 and 7z formats. Self-extractable packages with headers, cmake files and library interfaces, i.e. the necessary development files. These are meant for complementing the official releases of ParaView. Self-extractable packages with both the previous development files and the working ParaView + Open-MPI binaries. FYI: these are using Qt 4.6.3 in ParaView 3.14.*, instead of Qt 4.6.4; but it should still work, since Qt 4.6.4 should be a bug fix release and should be fully compatible symbol-wise... A few options were added to the SuperBuild files: Added ParaView_INSTALL_DEVELOPMENT to the main CMakeLists.txt file, for including the installation of the development files when installing ParaView. Added ParaView_MPI_SUPERBUILD for choosing to use the system's MPI (auto-detect only), instead of the default ones on SuperBuild. The usage case scenario for this option is documented here: http://www.cfd-online.com/Forums/blogs/wyldckat/1203-paraview-3-12-0-superbuild-openfoam.html List of code changes can be seen in the repository: http://code.google.com/p/unofficial-paraview-dev-install/source/detail?r=8ca38a1b4809448776414b2ed805604e4f2a5955repo=paraview3141 These changes aren't complete yet, since: There is still work to be done for automating the installation/packaging process. And the Silo project isn't automatically upgraded when using MSVC 2008 Express... the vcbuild application has to be used in an automated scenario with 2008 Express and it will probably require a somewhat ugly hack. Best regards, Bruno Santos at blueCAPE Lda PS: I hope this doesn't go top post... since a reply to this ANN seemed the best place to advertise this ;) On 06-04-2012 16:16, paraview-requ...@paraview.org wrote: Date: Fri, 6 Apr 2012 09:46:32 -0400 From: Utkarsh Ayachit utkarsh.ayac...@kitware.com Subject: [Paraview] ANN: ParaView 3.14.1 Available for download To: ParaView paraview@paraview.org,ParaView Developers paraview-develop...@paraview.org Folks, ParaView 3.14.1 is now available for download (http://paraview.org/paraview/resources/software.php). This is bug fix release that includes fixes for ParaView 3.14.0. ParaView 3.14.1 clients can be used to connect with servers running ParaView 3.14.0 and vice-versa. Similarly, plugins built for ParaView 3.14.0 should generally work with ParaView 3.14.1. The issues that were fixed are as follows: - 0012924: Paraview 3.12.0 fails to build with zlib 1.2.6, invalid conversion from 'void*' to 'gzFile' - 0012956: Auto apply, variables don't show up. - 0012964: View Layout State issue - 0012969: pvsc option enumeration issues - 0012970: No way to use netcdf4 with system netcdf - 0012981: Bug in panning/scaling of top-right axes in charts - 0012983: HSCTH files not reading timesteps correctly - 0012984: cherrypick the fix in VTK of vtkPyramid.cxx compute gradient into ParaView - 0012991: Build problem with nmake and windows - 0012997: protoc generation doesn't work on Windows with nmake builds. - 0013012: Errors on FindData - 0013030: EnSight6Reader incorrect transient single file format and scalar per element - 0013033: problems with scalar bar - 0013048: ContourRepresentation can't override Intialize Detailed change log can be found at http://paraview.org/Bug/changelog_page.php?version_id=95. ParaView Team -- http://www.bluecape.com.pt blueCAPE Lda - CAE solutions Rua Fonte dos Corvos, n.29 Casais da Serra 2665-305 Milharado PORTUGAL (+351) 219 755 345 Tel. (+351) 219 755 345 Fax (+351) 963 440 984 Mob. ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at:
