Excellent, thanks for letting me know. It is a bit miraculous since I could
not reproduce your problem (and was not willing to install Conda myself).
https://gitlab.com/petsc/petsc/-/merge_requests/3703
> On Mar 10, 2021, at 8:46 PM, Fande Kong wrote:
>
> Thanks Barry,
>
> Your branch
Thanks Barry,
Your branch works very well. Thanks for your help!!!
Could you merge it to upstream?
Fande
On Wed, Mar 10, 2021 at 6:30 PM Barry Smith wrote:
>
> Fande,
>
> Before send the files I requested in my last email could you try with
> the branch
Fande,
Before send the files I requested in my last email could you try with the
branch barry/2021-03-10/handle-pie-flag-conda/release and send its
configure.log if it fails.
Thanks
Barry
> On Mar 10, 2021, at 5:59 PM, Fande Kong wrote:
>
> Do not know what the fix should
> On Mar 10, 2021, at 5:59 PM, Fande Kong wrote:
>
> Do not know what the fix should look like, but this works for me
Please clarify.
Is this using the mpicc that has a -pie in the show or not?
Is this using the first "fix" I sent you also?
Please send your entire
Do not know what the fix should look like, but this works for me
@staticmethod
@@ -1194,7 +1194,6 @@ class Configure(config.base.Configure):
output.find('unrecognized command line option') >= 0 or
output.find('unrecognized option') >= 0 or output.find('unrecognised
option') >= 0 or
On Wed, Mar 10, 2021 at 1:36 PM Satish Balay wrote:
> Can you use a different MPI for this conda install?
>
We control how to build MPI. If I take "-pie" options out of LDFLAGS, conda
can not compile mpich.
>
> Alternative:
>
> ./configure CC=x86_64-apple-darwin13.4.0-clang
On Wed, Mar 10, 2021 at 12:05 PM Barry Smith wrote:
> Fande,
>
>Please add in config/BuildSystem/config/framework.py line 528 two new
> lines
>
> # pgi dumps filename on stderr - but returns 0 errorcode'
> lines = [s for s in lines if lines != 'conftest.c:']
> # in case
Can you use a different MPI for this conda install?
Alternative:
./configure CC=x86_64-apple-darwin13.4.0-clang COPTFLAGS="-march=core2
-mtune=haswell" CPPFLAGS=-I/Users/kongf/miniconda3/envs/testpetsc/include
LDFLAGS="-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs
I guess it was encoded in mpicc
petsc % mpicc -show
x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -Wl,-pie
-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs
-Wl,-rpath,/Users/kongf/miniconda3/envs/testpetsc/lib
-L/Users/kongf/miniconda3/envs/testpetsc/lib
> LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs -rpath
> /Users/kongf/miniconda3/envs/testpetsc/lib
> -L/Users/kongf/miniconda3/envs/testpetsc/lib
Does conda compiler pick up '-pie' from this env variable? If so - perhaps its
easier to just modify it?
Or is it encoded in
Fande,
Please add in config/BuildSystem/config/framework.py line 528 two new lines
# pgi dumps filename on stderr - but returns 0 errorcode'
lines = [s for s in lines if lines != 'conftest.c:']
# in case -pie is always being passed to linker
lines = [s for s in lines
On Wed, 10 Mar 2021, Fande Kong wrote:
> On Wed, Mar 10, 2021 at 9:34 AM Satish Balay wrote:
>
> > On Wed, 10 Mar 2021, Fande Kong wrote:
> >
> > > Thanks, Barry,
> > >
> > > It seems PETSc works fine with manually built compilers. We are pretty
> > much
> > > sure that the issue is related to
On Wed, 10 Mar 2021, Fande Kong wrote:
> Thanks, Barry,
>
> It seems PETSc works fine with manually built compilers. We are pretty much
> sure that the issue is related to conda. Conda might introduce extra flags.
>
> We still need to make it work with conda because we deliver our package via
>
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