Try running manually - and see if the example works. These messages
could be verbose - and misleading.
i.e
cd src/ksp/ksp/examples/tutorials
make ex2
mpiexec -n 2 ./ex2
Or you can avoid this by installing mpich - instead of openmpi.
Satish
On Tue, 4 Aug 2009, Yixun Liu wrote:
I'm not
file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
Satish Balay wrote:
Try running manually - and see if the example works. These messages
could be verbose - and misleading.
i.e
cd src/ksp/ksp/examples/tutorials
make
If the examples don't work [with the provided makefile] - you'll have
to check with the person who built this petsc for you..
Perhaps he needs to reinstall petsc - or just install blas/lapack for
this to work..
Satish
On Sun, 9 Aug 2009, irfan.khan at gatech.edu wrote:
Thank for your reply
alternatively - just access the private datastructe and print..
#include ../src/mat/impls/aij/mpi/mpiaij.h
Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat-data;
MatView(mpiaij-B,...);
Satish
On Mon, 10 Aug 2009, Matthew Knepley wrote:
If this is just for debugging, the easiest way I think is to
You don't need to install petsc with matlab for this. You can
just use '-mat_view_matlab' - or PETSC_VIEWER_MATLAB in your code.
Satish
On Mon, 10 Aug 2009, Weiwei Wang wrote:
Dear All,
I want to check the determinant of some sparse matrix in petsc but I
didn't know how to do it using
for debugging!) I've
expected to have an empty off-diagonal matrix. But the matrix is not empty.
But how is it possible, when all entries, which are inserted to the matrix via
MatSetValues, have indices for row and col within the ownership range of the
processors matrix?
Thomas
Satish
we had an old version - perhaps 2.2.x working on sx6. It has standard
compilers with mpi and blas - so I'm guessing current petsc should
work on sx9.
If you encounter problems building on sx9 - then send us the error
logs at petsc-maint at mcs.anl.gov
Satish
On Tue, 11 Aug 2009, Joel Guerrero
how to cross compile petsc on these platforms?.
I am using sx9 compilers (sxcc, sxc++, sxmpicc and so on).
Thanks for your help,
Joel
- Original Message
From: Satish Balay balay at mcs.anl.gov
To: PETSc users list petsc-users at mcs.anl.gov
Sent: Wednesday, August 12
lapack/blas libraries.
Hope you can help me,
Joel
- Original Message
From: Satish Balay balay at mcs.anl.gov
To: PETSc users list petsc-users at mcs.anl.gov
Sent: Wednesday, August 12, 2009 4:54:40 AM
Subject: Re: porting petsc to a nec sx9 computer running
you can replace (double)(var) with one of the following [approprate to
your code] thingy.
PetscAbsScalar(var)
PetscRealPart(var)
Satish
On Wed, 19 Aug 2009, Fredrik Bengzon wrote:
Hi
I'm using a Petsc 3 installation compiled with support for complex numbers.
However, in the code I have made
Actually we now use a notation with MKL library names that appears to
work consistantly across MKL versions. So there could be other
issues.
configure.log will clear things up [so send it over to us at petsc-maint at
mcs.anl.gov]
Satish
On Tue, 25 Aug 2009, Matthew Knepley wrote:
The
No new memory is allocated. It uses the array specified by the user..
Satish
On Mon, 31 Aug 2009, tsjb00 wrote:
Hi! I have a quick question about the 'CreateWith Array' subroutines. Do they
increase memory requirement? I am wondering if new memory space is allocated
for the vector/matrix
Easiest thing to do is isolate the changeset - and grab the diff - and
apply to petsc-3.0.0.
If you know the changeset id [or the app lines that belong to this
changeset] - I can take a look.
If its multiple changesets for this fix - then we'll have to
find/extract them all.. [finding all might
There is no destroy call between PetscMemoryGetCurrentUsage(),
PetscMemoryGetMaximumUsage - so MaxUsage isn't updated. Perhaps it
should be updated in PetscMemoryGetCurrentUsage() call aswell?
Satish
On Fri, 18 Sep 2009, Matt Funk wrote:
Ok,
i am more confused now.
The following is part
petscgetcommoncomm_ should be in somefort.F
Can you verify if you've configured/compiled PETSc with a
fortran compiler.
And also verify that there are no errors during petsc build [i.e in
make.log]
asterix:/home/balay/tmp/petsc-dist-test/asterix64/libnm -Ao *.a |grep -i
petscgetcommoncomm
SLES has been renamed/merged-into KSP a few releases back..
Satish
On Thu, 24 Sep 2009, I.Gutheil wrote:
Hello all,
we installed the new PETSc 3.0.0-p6 version of PETSc on a new computer
and now a user is missing petscsles.h.
When I looked into the src directory I saw that there is no
You have to remove the defines or rename them to something else in
petscconf.h. Just commenting or undefining doesn't work. [this is
because our build system does a grep on this file - so its doesn't
exactly follow preprocessing directives]
Regarding the original issue - I'm not sure why it
Perhaps you can try running in valgrind to see here the problem is.
You can also try --with-debugging=0 COPTFLAGS='-g -O' - and see if it
crashes. If so - run in a debugger to determine the problem.
Satish
On Tue, 20 Oct 2009, Andreas Grassl wrote:
Hello,
I wanted to use PaStix and have
Usually the header at the begining lists these compiler options
separately. But if you want the extra info - you can do:
make ACTION=lib tree
Note: this is not exactly the same build as the default build ['libfast'
attempts to compile multiple files with a sigle command - whereas
'lib' does one
Since you are using hypre - also use the additional option -with-cxx=icpc
[by default its picking up g++ - which is causing this incompatibility with icc
etc..]
Satish
On Wed, 21 Oct 2009, Dominik Szczerba wrote:
configure.log is attached. Looking forward your feedback.
Dominik
we use 'std:complex' with --with-clanguage=cxx [and with c - we use
c99 complex support]. I'm not sure what stl::complex is.
Satish
On Thu, 22 Oct 2009, Yujie wrote:
Hi, PETSc Developers,
What is the difference between PETSc complex number and stl::complex. If I
define a variable var using
On Sun, 1 Nov 2009, Umut Tabak wrote:
On Sun, Nov 01, 2009 at 07:44:58AM -0600, Barry Smith wrote:
MatSetValues() so long as you have good matrix preallocation this
will work fine.
Doing a transpose is very expensive.
Dear Barry and Matt,
Thanks for the replies, I am
Please send the complete compile command that gave this error.
Also do PETSc examples compile/run correctly? What do you get for:
cd src/ksp/ksp/examples/tutorials
make ex2
make ex2f
Satish
On Tue, 10 Nov 2009, Yin Feng wrote:
When I compiled petsc code, I encourntered following error code.
}
and I compiled ex2 successfully.
Thank you!
On Wed, Nov 11, 2009 at 12:49 AM, Satish Balay balay at mcs.anl.gov wrote:
Please send the complete compile command that gave this error.
Also do PETSc examples compile/run correctly? What do you get for:
cd src/ksp/ksp/examples
Just want to add one more point to this.
Most multicore machines do not provide scalable hardware. [yeah - the
FPUs cores are scalable - but the memory subsystem is not]. So one
should not expect scalable performance out of them. You should take
the 'max' performance you can get out out them -
works fine for me.
Perhaps you can retry after 'rm -rf externalpackages'
If the problem persists - send configure.log to petsc-maint at mcs.anl.gov
Satish
On Fri, 20 Nov 2009, Lukasz Kaczmarczyk wrote:
Hello
I try to configure petsc (p9) with SuperLU and I get error message
--download-mpich=1 defaults to gforker i.e a single machine.
If you wish to run on multiple machines - then you'll have to
figureout what mechanism you'd like to use - and then direct the MPI
install for that method.
For eg: - the common method is to use MPD. So you can install petsc with
The performance difference between c/c++ kernels and fortran kernels -
or c-complex/c++-complex can be compiler specific. You can build all
relavent versions [each with a different PETSC_ARCH] and see if it
makes a difference for you code.
The relavent configure options are:
On Tue, 15 Dec 2009, hxie at umn.edu wrote:
Hi,
I use X11 to connect the server and I want to draw the nonzero structure of
matrix. The option '-mat_view_draw' gives some error messages. How to fix it?
Thanks.
What error message?
Normally you can do the following:
ssh -Y remotemachine
)
From: Satish Balay balay at mcs.anl.gov
Subject: Re: How to visualize a matrix object from a remote machine?
To: PETSc users list petsc-users at mcs.anl.gov
Message-ID: alpine.LFD.2.00.0912151056190.20137 at asterix
Content-Type: TEXT/PLAIN; charset=US-ASCII
On Tue, 15 Dec 2009, hxie
In fortran - try and avoid passing constants with implicit types - and
explicitly define them.
i.e
PetscScalar one
one = 1.0d0
call VecSet(tmp, one, ierr)
etc..
Also - VecGetArrayF90() can be prefered over the old VecGetArray() [assuming
f77 is nolonger needed]
Satish
On Mon, 21 Dec 2009, Matthew Knepley wrote:
Installation is almost always done with root permission. If you
want to be pendatic, you can create other users for specific tasks,
like the webserver, but you STILL sudo to that user.
In most cases - the part thats done as 'root' is minimised [to
added now.
Satish
On Mon, 21 Dec 2009, Dominik Szczerba wrote:
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Would it be desirable to have [Petsc] automatically prepended to all
list messages? I am receiving loads of emails daily from multiple
mailing lists and it would greatly help
well if you need -mat_view_draw - then suggest editing
src/mat/impls/aij/mpi/mpiaij.c and increate this cut-off size.
[there is now a command-line option to over-ride this limit in petsc-dev]
For binary viewer - check mat/examples/tests/ex31.c
Satish
On Wed, 23 Dec 2009, hxie at umn.edu wrote:
On Wed, 23 Dec 2009, hxie at umn.edu wrote:
Hi,
Thanks. When I try to run with the option -ksp_xmonitor, no window pops up.
Do I need to reinstall the petsc with the option --with-x=1?
use -ksp_monitor_draw
BTW, if I want to use some external packages, do I have to reinstall
the petsc?
Binary viewer is to dump the matrix into a file - not a mat_view_draw
wrt -mat_view_draw - I've already indicated what to do..
satish
On Wed, 23 Dec 2009, hxie at umn.edu wrote:
Hi,
I put the following in my code:
--
PetscViewer viewer ...
call
Is this application making PETSc calls from fortran? You'll have to go
through the changes file - and make sure the prototype changes are
applied to your code [a fortran compiler doesn't help with prototype
checks here].
http://www.mcs.anl.gov/petsc/petsc-as/documentation/changes/300.html
[If the
On Wed, 13 Jan 2010, Jose E. Roman wrote:
On 13/01/2010, Takuya Sekikawa wrote:
I have a few more questions.
Just in case I want to ask.
[Q1]
In general, like ex1, Don't we need any change to source code to
run program with MPI-based system?
in other words, to run
Actually its --with-cc='win32fe cl --nodetect' --with-fc='win32fe ifort
--nodetect' etc..
check 'Using Visual Studio 2005:' section of installation instructions
http://www.mcs.anl.gov/petsc/petsc-as/documentation/installation.html
Satish
On Sun, 17 Jan 2010, Barry Smith wrote:
Try
Check the installation instructions - specifically - the section: 'Using Visual
Studio 2005'
http://www.mcs.anl.gov/petsc/petsc-as/documentation/installation.html
Satish
On Thu, 21 Jan 2010, Zhifeng Sheng - EWI wrote:
Dear all
Does anyone use Petsc in visual studio 2005? I have used petsc
Do you have to use proxy for your http connections? If so - perhaps
you can try adding the settings to ~/.hgrc - as this url indicates and
see if it fixes the problem.
Satish
On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
Hi,All,
I try to install a pets-dev locally according to the
Sorry - forgot to mention the url
http://mail.openjdk.java.net/pipermail/build-dev/2007-December/000628.html
Satish
On Mon, 25 Jan 2010, Satish Balay wrote:
Do you have to use proxy for your http connections? If so - perhaps
you can try adding the settings to ~/.hgrc - as this url indicates
!
Rebecca
Quoting Satish Balay balay at mcs.anl.gov:
Sorry - forgot to mention the url
http://mail.openjdk.java.net/pipermail/build-dev/2007-December/000628.html
Satish
On Mon, 25 Jan 2010, Satish Balay wrote:
Do you have to use proxy for your http connections
On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
Dear Satish,
I got these from those two commands:
rebecca at YuanWork:~/soft/petsc-dev$ env |grep -i proxy
http_proxy=http://:8080/
no_proxy=localhost,127.0.0.0/8,*.local
rebecca at YuanWork:~/soft/petsc-dev$ env |grep -i http
for this
build.
Satish
On Mon, 25 Jan 2010, Satish Balay wrote:
On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
Dear Satish,
I switched to install it manually
What do you mean? Did you get the nightly tarball?
and encounter an error when make test.
Did the build go through
Gald it works now.
BTW: What OS/version do you have? And what version of mercurial is
this? [just for completeness]
Satish
On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
Dear Satish,
There is no such an error showed up this time.
Thanks very much!
Rebecca
Quoting Satish
/c2html.tar.gz
The Fortran compiler I have is g77 and gfortran.
If I do not use Fortran, will this be fine?
Cheers,
Rebecca
Quoting Satish Balay balay at mcs.anl.gov:
Ok - is your manual install '2. access tarballs directly from our
mercurial server.?
http://www.mcs.anl.gov
, (Rebecca) Xuefei YUAN wrote:
I do not know why the connection time is out, but for completeness, I am using
Ubuntu 8.04, and the mercurial version is Mercurial Distributed SCM (version
0.9.5).
Cheers,
Rebecca
Quoting Satish Balay balay at mcs.anl.gov:
Gald it works now
Please do not cross post to multiple lists.
If you have installation issues - send the relavent configure.log to
petsc-maint at mcs.anl.gov
You should be able to specify 'CFLAGS=-MT' option to configure and
both PETSc and f2cblaslapack should use it. [assuimg you are using
--with-mpi=0]
Satish
-- Forwarded message --
Date: Tue, 2 Feb 2010 15:15:20 +
From: Denner, Fabian f.denne...@imperial.ac.uk
To: petsc-users-bounces at mcs.anl.gov petsc-users-bounces at mcs.anl.gov
Subject: Mesh class
Hi everybody,
are there any examples available, demonstrating the use of
- send configure.log, make.log test.log from
PETSC_DIR/PETSC_ARCH/conf to petsc-maint]
Satish
On Tue, 2 Feb 2010, Satish Balay wrote:
Please do not cross post to multiple lists.
If you have installation issues - send the relavent configure.log to
petsc-maint at mcs.anl.gov
You should
On Wed, 3 Feb 2010, Ryan Yan wrote:
Hi all,
Can someone help me to understand the Vec?
My question is: in the following piece of code, will a be changed, if b
is changed by the subroutine SNESComputeFunction? I did see that both a
and b are both pointers to an object.
Yes - all petsc
On Mon, 1 Mar 2010, Toby D. Young wrote:
One final question please:
I understand that this library can be built as static or dynamic; right?
Then I look at my build, and only libmpiuni.a appears. Why is that? Can a
libmpiuni.so exist? I build --with-shared=1.
Yes - is is the
Can't flood petsc-users mailing list with huge configure.log. petsc-maint is
more apporpriate for such issues.
asterix:/home/balay/download-pinecat makefile.test
ALL: ex1
CFLAGS = ${PETSC_CC_INCLUDES}
FFLAGS = ${PETSC_FC_INCLUDES}
include ${PETSC_DIR}/conf/variables
ex1: ex1.o
For one we recommend using the latest version i.e petsc-3.0.0 [or the
upcoming petsc-3.1 - via petsc-dev] - but not this old version 2.3.3.
Secondly - if you want to use PETSc from c++ - the recommended way is
to build it with the configure option '--with-clanguage=cxx'
And then [after making
You should use CXX=icpc
Satish
On Tue, 30 Mar 2010, Pedro Torres wrote:
Hello,
I'm trying to compile PETSc with intel compiler and get the error below. I
can compile a c/c++ source code without problem.
What am I doing wrong?. Thanks a lot
./config/configure.py
petsc-3.0 [with latest patches] configure should be able to handle
MLK-10. Don't remember MLK-11.
without MPI (--with-mpi=0), this configure succeeded with no problem.
Claims MLK-10 was detected properly without mpi. This is weird - but
again configure.log for both builds will clarify the
We have now added a copyright notice in the source tree. Its similar
to petsc license - and is cygwin.dll compatible [but not GPL]
http://petsc.cs.iit.edu/petsc/win32fe/raw-file/71989470a6d3/readme.html
Satish
On Sat, 27 Mar 2010, Gong Ding wrote:
Dear Petsc developers
For long time I am
/app1/mvapich2/current/include/mpif.h(9): error #6401: The attributes of
this name conflict with those made accessible by a USE statement.
[MPI_SOURCE]
INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
You are using some module - based on the 'use' statement refered by
the error above. And
On Fri, 16 Apr 2010, Matthew Knepley wrote:
2010/4/15 Leping Chen? chenleping at yahoo.cn
hello, petsc teams,
when I use FormFuncion(), I need use a value of x;
but x is defined by Vec, I don't know how to get a value of x, for
example, the 3rd value.
Exactly as Jed
On Fri, 16 Apr 2010, Leping Chen? wrote:
PetscOffset xx_i
Vec x
double precision u(6)
call VecGetArray(x,u,xx_i,ierr)
do 30 i=1,n
u(i) = 1000.0*i
u(i+xx_i) = 1000.0*i
30 continue
call
On Fri, 23 Apr 2010, Stephan Kramer wrote:
Hi all,
I'm trying to write a portable configure script for our software that uses
petsc, and needs to deal with petsc installations on a number of different
platforms. In petsc 3.0 I could do
make -f $(PETSC_DIR)/conf/base getlinklibs
and
On Fri, 23 Apr 2010, Stephan Kramer wrote:
Satish Balay wrote:
On Fri, 23 Apr 2010, Stephan Kramer wrote:
Hi all,
I'm trying to write a portable configure script for our software that uses
petsc, and needs to deal with petsc installations on a number of different
platforms
!
Rebecca
Quoting Satish Balay balay at mcs.anl.gov:
It should be used at runtime. For ex on our bgl - we use qsub as:
qsub --env BG_MAXALIGNEXP=-1 -t 00:15:00 -n 4 ./ex2
Satish
On Tue, 27 Apr 2010, (Rebecca) Xuefei YUAN wrote:
Dear Satish,
I think
Note: this might not work with some older MPI impls like
mpich1. However newer ones like mpich2 should work.
mpiexec -n 4 python foo.py
Satish
On Mon, 10 May 2010, Matthew Knepley wrote:
You use mpirun.
Matt
On Sun, May 9, 2010 at 10:42 AM, Dmitrey dmitrey15 at ukr.net wrote:
hi
, Satish Balay wrote:
Why not use petsc makefiles - and avoid these hasseles?
On Wed, 12 May 2010, Satish Balay wrote:
Attaching the modified makefile. It might need a couple of iterations
of fixing.
Also should remove '-c' from FFLAGS
Satish
-Beng Tay
On 13/5/2010 1:27 AM, Satish Balay wrote:
Attaching the modified makefile. It might need a couple of iterations
of fixing.
Hopefully its clear why it would work. Note - if not for different
flags required for different sources (opt/opt2/opt3) - you can build
all petsc/non
I don't understand the code change - but if you want to use c99
complex - you can build petsc with:
--with-scalar-type=complex --with-clanguage=c [which is the default for
clanguage]
And no code-change needed for PETSc. However if your code uses c++ -
you might have to address that..
Satish
PETSc just uses native lapack. There is nothing special here.
petscblaslapack have c-prototypes for the native blas/lapack - so
there is some error checking in petsc usage of blas/lapack.
Satish
On Mon, 21 Jun 2010, Andrew T Barker wrote:
As one part of a larger parallel code, I want to do
Actually gfortran-4.3+ should work [gfortran 4.2 is broken]
Satish
On Thu, 24 Jun 2010, Barry Smith wrote:
Yes.
On Jun 24, 2010, at 3:49 PM, Jed Brown wrote:
On Thu, 24 Jun 2010 15:46:05 -0500, Barry Smith bsmith at mcs.anl.gov
wrote:
It turns out there was a bug in
On Tue, 29 Jun 2010, Luke Bloy wrote:
Hi,
In one of my projects I use the ublas compressed row major format for storing
sparse matricies. One of the reasons i chose this format was interoperability
with other packages. I'd like to use some petsc and slepc functionality in my
project but I
On Tue, 29 Jun 2010, Luke Bloy wrote:
Thanks for the quick responses.
my matrices are fairly large 80,000 x 80,000 and not too sparse so I'd like to
avoid any serialization if possible.
I've worked out how to use MatCreateSeqAIJWithArrays so long as i control the
types used in my ublas
Perhaps you can build PETSc with the additional flag
'--with-large-file-io=1' and see if this helps..
Satish
On Tue, 29 Jun 2010, Yujie wrote:
Dear PETSc developers,
I want to output an about 36K*36K dense matrix using MatView in binary
format. I use RedHat Enterprise 5 64bits system.
One additional point: If using 'parallel processing' - then you
shouldn't be trying to circumvent this part of MPI standard [mpiexec -n].
And if you are primarily doing sequential stuff - you can build PETSc
with '--with-mpi=0' [so MPI is not used. However when working with
multiple MPI software
used during MatSetValues calls =1830
not using I-node routines
On Jul 7, 2010, at 12:51 PM, Satish Balay wrote:
total: nonzeros=1830, allocated nonzeros=29280
total number of mallocs used during MatSetValues calls =1830
There is something wrong with your
,TSDefaultComputeJacobianColor,matfdcoloring);
These are the Jacobian related codes.
On Jul 7, 2010, at 1:51 PM, Satish Balay wrote:
total: nonzeros=1830
mallocs used during MatSetValues calls =1830
Looks like you are zero-ing out the non-zero structure - before
assembling the matrix.
Are you
at psu.edu wrote:
On Jul 7, 2010, at 2:06 PM, Satish Balay wrote:
On Wed, 7 Jul 2010, Xuan YU wrote:
ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,N,N,10,PETSC_NULL,J);CHKERRQ(ierr);
ierr = MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
ierr = MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY
:
[0]PETSC ERROR: MatGetColoring() line 491 in src/mat/color/color.c
[0]PETSC ERROR: VecRestoreArrayPrivate3() line 201 in /work/petsc/pihm.c
On Jul 7, 2010, at 2:28 PM, Satish Balay wrote:
ierr = SNESComputeJacobian(ts_snes,CV_Y,J,J,flag);CHKERRQ(ierr);
Perhaps
For eg:
#if (PETSC_VERSION_RELEASE == 1)
write(6,25)
PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR,PETSC_VERSION_SUBMINOR,PETSC_VERSION_PATCH
25 format('PETSc Release Version: ',i1,'.',i1,'.',i1,' Patch:',i2)
#else
write(6,25)
25 format('PETSc Development Version: ',
Try:
./config/configure.py PETSC_DIR=$PWD PETSC_ARCH=win64-msvc-release
--download-c-blas-lapack=1 --with-x=0 --with-debugging=0 --with-cc='win32fe cl'
--with-fc=0
If it fails - send us configure.log at petsc-maint at mcs.anl.gov
BTW: What do you have in your LIB env variable? [MS search this
to get a usable MPICH2 installation,
Dominik
On Wed, Jul 21, 2010 at 6:09 PM, Satish Balay balay at mcs.anl.gov wrote:
Try:
./config/configure.py PETSC_DIR=$PWD PETSC_ARCH=win64-msvc-release
--download-c-blas-lapack=1 --with-x=0 --with-debugging=0 --with-cc='win32fe
cl' --with-fc=0
sh: Warning: win32fe: File Not Found: /cygdrive/c/Program
Files/MPICH2/lib/amd64/msmpi.lib
Looks like - if win32fe doesn't find the file - it doesn't try to
convert the path. This is not the cause of his configure failure.
The primary issue is: [which is much ahead in configure.log]
sh:
, Jul 22, 2010 at 3:45 PM, Satish Balay balay at mcs.anl.gov wrote:
sh: Warning: win32fe: File Not Found: /cygdrive/c/Program
Files/MPICH2/lib/amd64/msmpi.lib
Looks like - if win32fe doesn't find the file - it doesn't try to
convert the path. This is not the cause of his configure failure
TSSetIFunction() doesn't exist in petsc-3.0.0. The same code will not
work with both versions of petsc.
You should stick with one version [i.e the latest ..]
Satish
On Thu, 22 Jul 2010, Filippo Spiga wrote:
Dear all,
I'm trying to compile PETSc 3.0.0-p12 and PETSc 3.1-p3. The
Completed test examples
On Thu, Jul 22, 2010 at 4:13 PM, Satish Balay balay at mcs.anl.gov wrote:
On Thu, 22 Jul 2010, Dominik Szczerba wrote:
Many thanks for your precious feedback.
My MPICH install is 64 bit but it seems that for some reason 32 bit VC
compiler is invoked (I have both
Should have said:
cd src/ksp/ksp/examples/tutorials
make ex2
mpiexec -n 2 ./ex2.exe
mpiexec -localonly -n 2 ./ex2.exe
Satish
On Thu, 22 Jul 2010, Satish Balay wrote:
Try running manually. MPICH2 install by default insists on passwd -
and this process isn't handled by petsc scripts properly
or directory
make: *** No rule to make target `/conf/test'. Stop.
On Thu, Jul 22, 2010 at 10:11 PM, Satish Balay balay at mcs.anl.gov wrote:
Should have said:
cd src/ksp/ksp/examples/tutorials
make ex2
mpiexec -n 2 ./ex2.exe
mpiexec -localonly -n 2 ./ex2.exe
Satish
On Thu
On Thu, Jul 22, 2010 at 10:23 PM, Satish Balay balay at mcs.anl.gov wrote:
Sorry - you need PETSC_ARCH and PETSC_DIR with make. [normally these are
set as env variables]
make PETSC_DIR=/cygdrive/c/Users/Dominik/Programs/petsc-3.1-p3
PETSC_ARCH=win64-msvc-release ex2
Satish
) failed, exhaused all end points
Unable to connect to 'Tharsis:8676',
sock error: Error = -1
ReadFile() failed, error 109
unable to start the local smpd manager.
On Thu, Jul 22, 2010 at 10:52 PM, Satish Balay balay at mcs.anl.gov wrote:
Have you tried 'mpiexec -localonly
.
On Thu, Jul 22, 2010 at 10:52 PM, Satish Balay balay at mcs.anl.gov
wrote:
Have you tried 'mpiexec -localonly'?
Satish
On Thu, 22 Jul 2010, Dominik Szczerba wrote:
I tried:
$ /cygdrive/c/Program\ Files/MPICH2/bin/mpiexec.exe -np 4 ./ex2
On Fri, 23 Jul 2010, Jed Brown wrote:
On Fri, 23 Jul 2010 08:47:39 -0400, Filippo Spiga filippo.spiga at
disco.unimib.it wrote:
Dear Satish,
thanks for you reply. Anyway not in all case the libpetscts.{a,
so} is compiled. Is there a specific option of the configure that build
On Fri, 23 Jul 2010, Dominik Szczerba wrote:
On Fri, Jul 23, 2010 at 4:06 PM, Satish Balay balay at mcs.anl.gov wrote:
On Fri, 23 Jul 2010, Dominik Szczerba wrote:
OK so to conclude this thread, on Windows I need to run the command line
window in Administrator mode, and start
On Fri, 23 Jul 2010, Dominik Szczerba wrote:
Unfortunately, I need also a Windows version and I will leave the cygwin
option as the last resort.
For the moment I managed to successfully build petsc with --with-parmetis=1
--download-parmetis=1. When using --download-hypre=1 configure fails
Perhaps you missed a step here. After 'configure' you shoud do 'make
all' to rebuild the PETSc libraries.
Then you should try 'make test' to verify the build.
After that - attempt to build your code.
satish
On Mon, 26 Jul 2010, Xuan YU wrote:
On Jul 26, 2010, at 3:53 PM, Barry Smith wrote:
You list one compile with linux-gnu-c-debug - and the other with
linux-gnu-c-opt.
Looks like you rebuilt linux-gnu-c-debug with sundials - but not
linux-gnu-c-opt build.
Satish
On Tue, 27 Jul 2010, Xuan YU wrote:
On Jul 27, 2010, at 6:22 PM, Jed Brown wrote:
On Tue, 27 Jul 2010 18:14:46
Perhaps your previous build is with --with-mpi=0
Just do:
./configure --download-sundials=1 --download-mpi=1 --download-f-blas-lapack=1
--with-debugging=0 PETSC_ARCH=linux-gnu-c-opt
Satish
On Wed, 28 Jul 2010, Xuan YU wrote:
On Jul 28, 2010, at 5:07 PM, Jed Brown wrote:
On Wed, 28 Jul
On Mon, 2 Aug 2010, John-Michael Fischer wrote:
I was wondering if when PETSC is compiled with-debugging=1 (or any other
configure flag for that matter) I can get it to report the line and filename
that errors occur on in my source.
It's dutifully reporting the file and line # of the
The idea here is - you would:
include conf/variables in your makefile and use PETSC_LIB in the
target - so everything works correctly.
The complexity you mention is to manage --with-single-lib=0/1. So
Instead of trying to list libraries directly in your makefile [which
becomes unportable] - I
You configure script would have to create this makefile and echo
${PETSC_LIB} - and other stuff you need form a given install of PETSc
- to detect what you want.
Anythings else is not portable. [And won't work across different PETSc
installations - of the same version]
If you want a simple
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