Re: [petsc-users] Good performance For small problem on GALILEO

2017-10-20 Thread Matthew Knepley
Justin is right that parallelism will be of limited value for such small systems. This looks like a serial optimization job. Moreover, in this case, a better numerical method usually trumps any kind of machine optimization. Matt On Fri, Oct 20, 2017 at 2:55 AM, Justin Chang

Re: [petsc-users] Good performance For small problem on GALILEO

2017-10-20 Thread Justin Chang
600 unknowns is way too small to parallelize. Need at least 10,000 unknowns per MPI process: https://www.mcs.anl.gov/petsc/documentation/faq.html#slowerparallel What problem are you solving? Sounds like you either compiled PETSc with debugging mode on or you just have a really terrible solver.

[petsc-users] Good performance For small problem on GALILEO

2017-10-19 Thread Luca Verzeroli
Good morning, For my thesis I'm dealing with GALILEO, one of the clusters owned by Cineca. http://www.hpc.cineca.it/hardware/galileo The first question is: What is the best configuration to run petsc on this kind of cluster? My code is only a MPI program and I would like to know if it's better