Thanks.
Sepideh
From: Matthew Knepley
Sent: Thursday, April 19, 2018 1:48:57 PM
To: Sepideh Kavousi
Cc: Dave May; petsc-users@mcs.anl.gov; Karl Rupp
Subject: Re: [petsc-users] error running parallel on cluster
Great! I have approved it. Now it goes to master
, 2018 11:14:47 PM
> *To:* Matthew Knepley
> *Cc:* Sepideh Kavousi; petsc-users@mcs.anl.gov
>
> *Subject:* Re: [petsc-users] error running parallel on cluster
>
>
>
> On 18 April 2018 at 23:52, Matthew Knepley wrote:
>
> On Wed, Apr 18, 2018 at 5:52 PM, Sepideh Kavousi w
I submitted the pull request this morning.
Regards,
Sepideh
From: Dave May
Sent: Wednesday, April 18, 2018 11:14:47 PM
To: Matthew Knepley
Cc: Sepideh Kavousi; petsc-users@mcs.anl.gov
Subject: Re: [petsc-users] error running parallel on cluster
On 18 April
From: Dave May mailto:dave.mayhe...@gmail.com>>
Sent: Wednesday, April 18, 2018 3:13:33 PM
To: Sepideh Kavousi
Cc: Matthew Knepley; petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>
Subject: Re: [petsc-users] error running parallel on cluster
On 18 April 2018 at 21:06, Sepi
gt; --
>> *From:* Dave May
>> *Sent:* Wednesday, April 18, 2018 3:13:33 PM
>> *To:* Sepideh Kavousi
>> *Cc:* Matthew Knepley; petsc-users@mcs.anl.gov
>> *Subject:* Re: [petsc-users] error running parallel on cluster
>>
>>
>>
&
> Sepideh
> --
> *From:* Dave May
> *Sent:* Wednesday, April 18, 2018 3:13:33 PM
> *To:* Sepideh Kavousi
> *Cc:* Matthew Knepley; petsc-users@mcs.anl.gov
> *Subject:* Re: [petsc-users] error running parallel on cluster
>
>
>
> On 18 April 2018
Mathew and Dave,
Thank you so much it is working perfectly now.
Sepideh
From: Dave May
Sent: Wednesday, April 18, 2018 3:13:33 PM
To: Sepideh Kavousi
Cc: Matthew Knepley; petsc-users@mcs.anl.gov
Subject: Re: [petsc-users] error running parallel on cluster
On
eak.
> Thanks,
>
> Sepideh
> --------------
> *From:* Matthew Knepley
> *Sent:* Tuesday, April 17, 2018 5:59:12 PM
>
> *To:* Sepideh Kavousi
> *Cc:* petsc-users@mcs.anl.gov
> *Subject:* Re: [petsc-users] error running parallel on cluster
>
> On
= DMDAVecGetArray(dm,Xloc,&x);CHKERRQ(ierr);
> ierr = DMDAVecGetArray(dm,Xdotloc,&xdot);CHKERRQ(ierr);
>
> Thanks,
>
> Sepideh
> ----------
> *From:* Matthew Knepley
> *Sent:* Tuesday, April 17, 2018 5:59:12 PM
> *To:* Sepideh Kavousi
> *Cc:
= DMDAVecGetArray(dm,Xloc,&x);CHKERRQ(ierr);
ierr = DMDAVecGetArray(dm,Xdotloc,&xdot);CHKERRQ(ierr);
Thanks,
Sepideh
From: Matthew Knepley
Sent: Tuesday, April 17, 2018 5:59:12 PM
To: Sepideh Kavousi
Cc: petsc-users@mcs.anl.gov
Subject: Re: [petsc-use
e vector of Xdot, not the array. So I think I should use
> SetIFunction instead of SetIFunctionLocal.
>
>
> Sepideh
> --
> *From:* Matthew Knepley
> *Sent:* Tuesday, April 17, 2018 1:22:53 PM
> *To:* Sepideh Kavousi
> *Cc:* petsc-users@mcs.anl.gov
___
From: Matthew Knepley
Sent: Tuesday, April 17, 2018 1:22:53 PM
To: Sepideh Kavousi
Cc: petsc-users@mcs.anl.gov
Subject: Re: [petsc-users] error running parallel on cluster
On Tue, Apr 17, 2018 at 1:50 PM, Sepideh Kavousi
mailto:skav...@lsu.edu>> wrote:
Mathew,
I previously use
DMDATSSet
nnected,
> although I have used TSSetDM in the main function.
>
> Can you please help me what should I do?
> Regards,
> Sepideh
>
>
>
>
> ----------
> *From:* Matthew Knepley
> *Sent:* Monday, April 16, 2018 9:34:01 PM
>
> *To:* Sepideh Kavousi
> *Cc:* pe
pideh Kavousi
Cc: petsc-users@mcs.anl.gov
Subject: Re: [petsc-users] error running parallel on cluster
On Mon, Apr 16, 2018 at 10:22 PM, Sepideh Kavousi
mailto:skav...@lsu.edu>> wrote:
I run with valgrind with the following command:
/work/skavou1/petsc/debug/bin/mpiexec -np 2 valgrind --t
'd or (recently) free'd
> ==39396==
>
> Thanks,
>
> Sepideh
> --
> *From:* Matthew Knepley
> *Sent:* Monday, April 16, 2018 8:44:43 PM
> *To:* Sepideh Kavousi
> *Cc:* petsc-users@mcs.anl.gov
> *Subject:* Re: [petsc-users] error runn
ers@mcs.anl.gov
Subject: Re: [petsc-users] error running parallel on cluster
I run with valgrind with the following command:
/work/skavou1/petsc/debug/bin/mpiexec -np 2 valgrind --tool=memcheck -q
--num-callers=20 --log-file=valgrind.log.%p ./one.out -malloc off -ts_monitor
-snes_fd_co
c:303)
==39396== Address 0x18 is not stack'd, malloc'd or (recently) free'd
==39396==
Thanks,
Sepideh
From: Matthew Knepley
Sent: Monday, April 16, 2018 8:44:43 PM
To: Sepideh Kavousi
Cc: petsc-users@mcs.anl.gov
Subject: Re: [petsc-users] error running
[i].p-1)*(aY[j][i].p*aY[j][i].p-1)*(aY[j][
> i].U+P1)-(1-(1-user->k)*P1)*(1.0+4.0*user->epsilon*cos(4.0*
> theta))*(1.0+4.0*user->epsilon*cos(4.0*theta))*aYdot[j][i].p )*hx2 ;
>
> }
> }
>
> Sepideh
> --
> *From:* Mat
From: Matthew Knepley
Sent: Monday, April 16, 2018 8:36:37 PM
To: Sepideh Kavousi
Cc: petsc-users@mcs.anl.gov
Subject: Re: [petsc-users] error running parallel on cluster
On Mon, Apr 16, 2018 at 9:20 PM, Sepideh Kavousi
mailto:skav...@lsu.edu>>
On Mon, Apr 16, 2018 at 9:20 PM, Sepideh Kavousi wrote:
> Hello,
> I am solving a PDE where I have the spacial derivtive of the time
> derivative of a variable. In the DMDATSSetIFunctionLocal function I
> defined d(dY/dt)/dx as:
> (aYdot[j][i+1].p-aYdot[j][i-1].p)/(2.0*user->hx)
>
I do not th
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