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from a8268a8 Set distribution to unstable. new 3615491 New upstream version 1.14.2 new fe4a609 Merge tag 'upstream/1.14.2' new c6b9e80 New upstream release. new 0e06a7b Bump Standards-Version to 4.1.0, no changes. new a7c2761 Drop patches, applied upstream. new 55ab5b1 Set distribution to unstable. The 6 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: .coveragerc | 3 + .github/ISSUE_TEMPLATE.md | 4 +- .travis.yml | 2 +- CHANGELOG.txt | 153 +++ README.rst | 44 +- THANKS.txt | 15 +- debian/changelog | 9 + debian/control | 2 +- .../fix-for-numpy-bump-induced-breakage.patch | 346 ------- debian/patches/series | 2 - debian/patches/unusual-interpreter.patch | 12 - doc/source/conf.py | 6 +- doc/source/developers/docs/index.rst | 4 +- doc/source/developers/guidelines.rst | 2 +- doc/source/index.rst | 2 +- doc/source/library/weights/Contiguity.rst | 9 + doc/source/users/tutorials/autocorrelation.rst | 4 +- doc/source/users/tutorials/fileio.rst | 32 +- doc/source/users/tutorials/region.rst | 2 +- doc/source/users/tutorials/weights.rst | 98 +- pysal/cg/kdtree.py | 22 +- pysal/cg/segmentLocator.py | 6 +- pysal/contrib/geotable/tests/test_utils.py | 61 +- pysal/contrib/geotable/utils.py | 46 +- pysal/contrib/glm/GLM_validate_estimation.ipynb | 444 +++++++++ pysal/contrib/glm/glm.py | 58 +- pysal/contrib/glm/iwls.py | 34 +- pysal/contrib/glm/utils.py | 59 ++ pysal/contrib/gwr/__init__.py | 4 + pysal/contrib/gwr/diagnostics.py | 81 ++ pysal/contrib/gwr/gwr.py | 882 ++++++++++++++++ pysal/contrib/gwr/kernels.py | 124 +++ .../gwr/notebooks/GWR_Georgia_Example.ipynb | 354 +++++++ .../gwr/notebooks/GWR_Georgia_Prediction.ipynb | 1049 ++++++++++++++++++++ pysal/contrib/gwr/search.py | 143 +++ pysal/contrib/gwr/sel_bw.py | 256 +++++ pysal/contrib/gwr/tests/test_gwr.py | 849 ++++++++++++++++ pysal/contrib/gwr/tests/test_kernels.py | 84 ++ pysal/contrib/gwr/tests/test_sel_bw.py | 130 +++ pysal/contrib/network/klincs.py | 2 +- pysal/contrib/spint/gravity.py | 20 +- pysal/contrib/spint/tests/test_gravity.py | 15 +- pysal/contrib/viz/mapping.py | 10 +- pysal/core/IOHandlers/arcgis_swm.py | 123 ++- pysal/core/util/shapefile.py | 7 + pysal/esda/geary.py | 18 +- pysal/esda/mapclassify.py | 2 +- pysal/esda/moran.py | 36 +- pysal/esda/smoothing.py | 96 +- pysal/esda/tests/test_geary.py | 16 +- pysal/esda/tests/test_moran.py | 8 + pysal/esda/tests/test_smoothing.py | 104 +- pysal/examples/clearwater/clearwater_BS_F.ctl | 42 + .../clearwater/clearwater_BS_F_listwise.csv | 240 +++++ .../clearwater/clearwater_BS_F_summary.txt | 173 ++++ pysal/examples/clearwater/clearwater_BS_NN.ctl | 42 + .../clearwater/clearwater_BS_NN_listwise.csv | 240 +++++ .../clearwater/clearwater_BS_NN_summary.txt | 179 ++++ pysal/examples/clearwater/clearwater_GS_F.ctl | 42 + .../clearwater/clearwater_GS_F_listwise.csv | 240 +++++ .../clearwater/clearwater_GS_F_summary.txt | 175 ++++ pysal/examples/clearwater/clearwater_GS_NN.ctl | 42 + .../clearwater/clearwater_GS_NN_listwise.csv | 240 +++++ .../clearwater/clearwater_GS_NN_summary.txt | 174 ++++ pysal/examples/clearwater/landslides.csv | 240 +++++ pysal/examples/clearwater/quads.dbf | Bin 0 -> 1788 bytes pysal/examples/clearwater/quads.shp | Bin 0 -> 2004 bytes pysal/examples/clearwater/quads.shx | Bin 0 -> 212 bytes pysal/examples/clearwater/streams.dbf | Bin 0 -> 1437154 bytes pysal/examples/clearwater/streams.shp | Bin 0 -> 2130324 bytes pysal/examples/clearwater/streams.shx | Bin 0 -> 55348 bytes pysal/examples/georgia/FB.p | 94 ++ pysal/examples/georgia/GData_utm.csv | 160 +++ pysal/examples/georgia/G_utm.dbf | Bin 0 -> 47706 bytes pysal/examples/georgia/G_utm.sbn | Bin 0 -> 1964 bytes pysal/examples/georgia/G_utm.sbx | Bin 0 -> 340 bytes pysal/examples/georgia/G_utm.shp | Bin 0 -> 243584 bytes pysal/examples/georgia/G_utm.shx | Bin 0 -> 1476 bytes pysal/examples/georgia/XB.p | 37 + pysal/examples/georgia/err.p | 37 + pysal/examples/georgia/georgia_BS_F.ctl | 45 + pysal/examples/georgia/georgia_BS_F_listwise.csv | 160 +++ pysal/examples/georgia/georgia_BS_F_summary.txt | 170 ++++ pysal/examples/georgia/georgia_BS_NN.ctl | 45 + pysal/examples/georgia/georgia_BS_NN_listwise.csv | 160 +++ pysal/examples/georgia/georgia_BS_NN_summary.txt | 170 ++++ pysal/examples/georgia/georgia_GS_F.ctl | 45 + pysal/examples/georgia/georgia_GS_F_listwise.csv | 160 +++ pysal/examples/georgia/georgia_GS_F_summary.txt | 168 ++++ pysal/examples/georgia/georgia_GS_NN.ctl | 45 + pysal/examples/georgia/georgia_GS_NN_listwise.csv | 160 +++ pysal/examples/georgia/georgia_GS_NN_summary.txt | 165 +++ pysal/examples/londonhp/londonhp.dbf | Bin 0 -> 81885 bytes pysal/examples/londonhp/londonhp.shp | Bin 0 -> 8948 bytes .../SohoPeople.shx => londonhp/londonhp.shx} | Bin 2692 -> 2628 bytes pysal/examples/tokyo/Readme_tokyomortality.txt | 55 + pysal/examples/tokyo/SampleTokyoMortalityGWPR.ctl | 40 + pysal/examples/tokyo/Tokyomortality.csv | 1 + pysal/examples/tokyo/Tokyomortality.txt | 263 +++++ pysal/examples/tokyo/tokyo_BS_F.ctl | 41 + pysal/examples/tokyo/tokyo_BS_F_listwise.csv | 263 +++++ pysal/examples/tokyo/tokyo_BS_F_summary.txt | 183 ++++ pysal/examples/tokyo/tokyo_BS_NN.ctl | 41 + pysal/examples/tokyo/tokyo_BS_NN_OFF.ctl | 40 + pysal/examples/tokyo/tokyo_BS_NN_OFF_listwise.csv | 263 +++++ pysal/examples/tokyo/tokyo_BS_NN_OFF_summary.txt | 148 +++ pysal/examples/tokyo/tokyo_BS_NN_listwise.csv | 263 +++++ pysal/examples/tokyo/tokyo_BS_NN_summary.txt | 162 +++ pysal/examples/tokyo/tokyo_GS_F.ctl | 41 + pysal/examples/tokyo/tokyo_GS_F_listwise.csv | 263 +++++ pysal/examples/tokyo/tokyo_GS_F_summary.txt | 183 ++++ pysal/examples/tokyo/tokyo_GS_NN.ctl | 41 + pysal/examples/tokyo/tokyo_GS_NN_listwise.csv | 263 +++++ pysal/examples/tokyo/tokyo_GS_NN_summary.txt | 162 +++ pysal/examples/tokyo/tokyomet262.dbf | Bin 0 -> 8514 bytes pysal/examples/tokyo/tokyomet262.prj | 1 + pysal/examples/tokyo/tokyomet262.shp | Bin 0 -> 184536 bytes pysal/examples/tokyo/tokyomet262.shp.xml | 2 + pysal/examples/tokyo/tokyomet262.shx | Bin 0 -> 2196 bytes pysal/examples/wmat/us48_CONTIGUITY_EDGES_ONLY.swm | Bin 0 -> 2350 bytes pysal/examples/wmat/us48_INVERSE_DISTANCE.swm | Bin 0 -> 3654 bytes pysal/network/network.py | 78 +- pysal/network/tests/test_network.py | 5 + pysal/network/util.py | 49 +- pysal/spatial_dynamics/util.py | 8 +- pysal/spreg/error_sp_hom.py | 4 +- pysal/spreg/summary_output.py | 2 +- pysal/spreg/tests/test_error_sp_het_regimes.py | 2 +- pysal/spreg/tests/test_error_sp_hom_regimes.py | 2 +- pysal/spreg/tests/test_error_sp_regimes.py | 2 +- pysal/spreg/utils.py | 2 +- pysal/version.py | 4 +- pysal/weights/Contiguity.py | 62 +- pysal/weights/Distance.py | 8 +- pysal/weights/spatial_lag.py | 15 +- pysal/weights/tests/test_Contiguity.py | 7 + pysal/weights/tests/test_Distance.py | 18 +- pysal/weights/tests/test_spatial_lag.py | 4 +- pysal/weights/tests/test_swm_IO.py | 42 + pysal/weights/util.py | 17 +- requirements_dev.txt | 2 +- rtd.txt | 1 + setup.py | 4 +- 143 files changed, 12101 insertions(+), 740 deletions(-) delete mode 100644 debian/patches/fix-for-numpy-bump-induced-breakage.patch delete mode 100644 debian/patches/series delete mode 100644 debian/patches/unusual-interpreter.patch create mode 100644 pysal/contrib/glm/GLM_validate_estimation.ipynb create mode 100644 pysal/contrib/gwr/__init__.py create mode 100644 pysal/contrib/gwr/diagnostics.py create mode 100644 pysal/contrib/gwr/gwr.py create mode 100644 pysal/contrib/gwr/kernels.py create mode 100644 pysal/contrib/gwr/notebooks/GWR_Georgia_Example.ipynb create mode 100644 pysal/contrib/gwr/notebooks/GWR_Georgia_Prediction.ipynb create mode 100644 pysal/contrib/gwr/search.py create mode 100644 pysal/contrib/gwr/sel_bw.py create mode 100644 pysal/contrib/gwr/tests/test_gwr.py create mode 100644 pysal/contrib/gwr/tests/test_kernels.py create mode 100644 pysal/contrib/gwr/tests/test_sel_bw.py create mode 100755 pysal/examples/clearwater/clearwater_BS_F.ctl create mode 100755 pysal/examples/clearwater/clearwater_BS_F_listwise.csv create mode 100755 pysal/examples/clearwater/clearwater_BS_F_summary.txt create mode 100755 pysal/examples/clearwater/clearwater_BS_NN.ctl create mode 100755 pysal/examples/clearwater/clearwater_BS_NN_listwise.csv create mode 100755 pysal/examples/clearwater/clearwater_BS_NN_summary.txt create mode 100755 pysal/examples/clearwater/clearwater_GS_F.ctl create mode 100755 pysal/examples/clearwater/clearwater_GS_F_listwise.csv create mode 100755 pysal/examples/clearwater/clearwater_GS_F_summary.txt create mode 100755 pysal/examples/clearwater/clearwater_GS_NN.ctl create mode 100755 pysal/examples/clearwater/clearwater_GS_NN_listwise.csv create mode 100755 pysal/examples/clearwater/clearwater_GS_NN_summary.txt create mode 100755 pysal/examples/clearwater/landslides.csv create mode 100755 pysal/examples/clearwater/quads.dbf create mode 100755 pysal/examples/clearwater/quads.shp create mode 100755 pysal/examples/clearwater/quads.shx create mode 100755 pysal/examples/clearwater/streams.dbf create mode 100755 pysal/examples/clearwater/streams.shp create mode 100755 pysal/examples/clearwater/streams.shx create mode 100644 pysal/examples/georgia/FB.p create mode 100755 pysal/examples/georgia/GData_utm.csv create mode 100755 pysal/examples/georgia/G_utm.dbf create mode 100755 pysal/examples/georgia/G_utm.sbn create mode 100755 pysal/examples/georgia/G_utm.sbx create mode 100755 pysal/examples/georgia/G_utm.shp create mode 100755 pysal/examples/georgia/G_utm.shx create mode 100644 pysal/examples/georgia/XB.p create mode 100644 pysal/examples/georgia/err.p create mode 100755 pysal/examples/georgia/georgia_BS_F.ctl create mode 100755 pysal/examples/georgia/georgia_BS_F_listwise.csv create mode 100755 pysal/examples/georgia/georgia_BS_F_summary.txt create mode 100755 pysal/examples/georgia/georgia_BS_NN.ctl create mode 100755 pysal/examples/georgia/georgia_BS_NN_listwise.csv create mode 100755 pysal/examples/georgia/georgia_BS_NN_summary.txt create mode 100755 pysal/examples/georgia/georgia_GS_F.ctl create mode 100755 pysal/examples/georgia/georgia_GS_F_listwise.csv create mode 100755 pysal/examples/georgia/georgia_GS_F_summary.txt create mode 100755 pysal/examples/georgia/georgia_GS_NN.ctl create mode 100755 pysal/examples/georgia/georgia_GS_NN_listwise.csv create mode 100755 pysal/examples/georgia/georgia_GS_NN_summary.txt create mode 100644 pysal/examples/londonhp/londonhp.dbf create mode 100644 pysal/examples/londonhp/londonhp.shp copy pysal/examples/{snow_maps/SohoPeople.shx => londonhp/londonhp.shx} (95%) create mode 100755 pysal/examples/tokyo/Readme_tokyomortality.txt create mode 100755 pysal/examples/tokyo/SampleTokyoMortalityGWPR.ctl create mode 100644 pysal/examples/tokyo/Tokyomortality.csv create mode 100755 pysal/examples/tokyo/Tokyomortality.txt create mode 100755 pysal/examples/tokyo/tokyo_BS_F.ctl create mode 100755 pysal/examples/tokyo/tokyo_BS_F_listwise.csv create mode 100755 pysal/examples/tokyo/tokyo_BS_F_summary.txt create mode 100755 pysal/examples/tokyo/tokyo_BS_NN.ctl create mode 100644 pysal/examples/tokyo/tokyo_BS_NN_OFF.ctl create mode 100644 pysal/examples/tokyo/tokyo_BS_NN_OFF_listwise.csv create mode 100644 pysal/examples/tokyo/tokyo_BS_NN_OFF_summary.txt create mode 100755 pysal/examples/tokyo/tokyo_BS_NN_listwise.csv create mode 100755 pysal/examples/tokyo/tokyo_BS_NN_summary.txt create mode 100755 pysal/examples/tokyo/tokyo_GS_F.ctl create mode 100755 pysal/examples/tokyo/tokyo_GS_F_listwise.csv create mode 100755 pysal/examples/tokyo/tokyo_GS_F_summary.txt create mode 100755 pysal/examples/tokyo/tokyo_GS_NN.ctl create mode 100755 pysal/examples/tokyo/tokyo_GS_NN_listwise.csv create mode 100755 pysal/examples/tokyo/tokyo_GS_NN_summary.txt create mode 100755 pysal/examples/tokyo/tokyomet262.dbf create mode 100755 pysal/examples/tokyo/tokyomet262.prj create mode 100755 pysal/examples/tokyo/tokyomet262.shp create mode 100755 pysal/examples/tokyo/tokyomet262.shp.xml create mode 100755 pysal/examples/tokyo/tokyomet262.shx create mode 100644 pysal/examples/wmat/us48_CONTIGUITY_EDGES_ONLY.swm create mode 100644 pysal/examples/wmat/us48_INVERSE_DISTANCE.swm mode change 100755 => 100644 pysal/spreg/utils.py create mode 100644 pysal/weights/tests/test_swm_IO.py -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-grass/pysal.git _______________________________________________ Pkg-grass-devel mailing list Pkg-grass-devel@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel