Your message dated Mon, 06 Jan 2014 11:00:09 +0000
with message-id <e1w07uj-0005ym...@franck.debian.org>
and subject line Bug#648537: fixed in hdf5 1.8.12-3
has caused the Debian Bug report #648537,
regarding libhdf5-openmpi-dev lacks /usr/bin/{h5pcc,h5pfc}
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
648537: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=648537
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Subject: libhdf5-openmpi-dev lacks /usr/bin/{h5pcc,h5pfc}
Package: libhdf5-openmpi-dev
Version: 1.8.4-patch1-2ubuntu4
Severity: normal
*** Please type your report below this line ***
None of the parallel HDF5 development packages, nor their prerequisite
packages, installs the expected compiler wrappers /usr/bin/h5pcc and
/usr/bin/h5pfc. The h5pcc and h5pfc wrappers are, however, installed
when building parallel HDF5 from the source. libhd5-openmpi-dev is one
such example but I believe the bug exists for all packages matching
libhdf5-*mpi*-dev.
If not fixed, users installing the parallel HDF5 development packages
cannot use them to compile source code without some error-prone
workarounds.
This problem is related to, but not fixed, by
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=629157. In a similar
vein, one could add a package called "hdf5-helpers-mpi" containing
/usr/bin/h5pcc and /usr/bin/h5pfc and then have it be a mandatory prereq
for libhdf5-*mpi*-dev.
Another approach would be to have libhdf5-*mpi*-dev directly
install /usr/bin/h5pcc and /usr/bin/h5pfc.
Thanks for your time,
Rhys Ulerich
-- System Information:
Debian Release: wheezy/sid
APT prefers oneiric-updates
APT policy: (500, 'oneiric-updates'), (500, 'oneiric-security'),
(500, 'oneiric-proposed'), (500, 'oneiric'), (100,
'oneiric-backports')
Architecture: amd64 (x86_64)
Kernel: Linux 3.0.0-13-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
(ignored: LC_ALL set to en_US.UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages libhdf5-openmpi-dev depends on:
ii libhdf5-openmpi- 1.8.4-patch1-2ubuntu4 Hierarchical Data Format 5 (HDF5)
ii libjpeg62-dev 6b1-1ubuntu2 Development files for the IJG JPEG
ii libopenmpi-dev 1.4.3-2.1ubuntu1 high performance message passing l
ii zlib1g-dev 1:1.2.3.4.dfsg-3ubuntu3 compression library - development
libhdf5-openmpi-dev recommends no packages.
Versions of packages libhdf5-openmpi-dev suggests:
pn libhdf5-doc <none> (no description available)
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.12-3
We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 648...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gilles Filippini <p...@debian.org> (supplier of updated hdf5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 04 Jan 2014 19:55:21 +0100
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-cpp-7 libhdf5-cpp-7-dbg libhdf5-dev
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich-7
libhdf5-mpich2-7 libhdf5-mpich-dev libhdf5-mpich2-dev libhdf5-mpich-7-dbg
libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools
Architecture: source all i386
Version: 1.8.12-3
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Changed-By: Gilles Filippini <p...@debian.org>
Description:
hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
libhdf5-cpp-7 - Hierarchical Data Format 5 (HDF5) - C++ libraries
libhdf5-cpp-7-dbg - Hierarchical Data Format 5 (HDF5) - C++ Debug package
libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
default M
libhdf5-mpich-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2
versio
libhdf5-mpich-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH ver
libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH
version
libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH ver
libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files -
OpenMPI versi
libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug
package
libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
OpenMPI v
Closes: 648537 721202 732202 733046
Changes:
hdf5 (1.8.12-3) experimental; urgency=medium
.
* debian/rules:
+ Simplify DEFAULT_MPI retrieval
+ Simplify build_openmpi detection depending on arch
+ Enable arch arm64 for openmpi to be consistent with debian/control
* mpich2 to mpich transition (closes: #733046):
- s/mpich2/mpich/g
- libhdf5-mpich2-* transition packages
* Introduce pkg-config files for the -dev packages
(closes: #721202, #732202).
* Install /usr/bin/h5p{c,f}c with mpi-dev packages
(closes: #648537).
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