[hdf5] 09/11: Keep SONAME 7 for now until we decide something

2014-05-29 Thread Gilles Filippini
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pini pushed a commit to branch master
in repository hdf5.

commit ddd8ee3283ed5fddf6501dd87b8eecb071cd312d
Author: Gilles Filippini p...@debian.org
Date:   Mon May 26 15:53:16 2014 +0200

Keep SONAME 7 for now until we decide something
---
 debian/patches/soname.diff | 6 --
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/debian/patches/soname.diff b/debian/patches/soname.diff
index 5256e95..b5a90ad 100644
--- a/debian/patches/soname.diff
+++ b/debian/patches/soname.diff
@@ -21,11 +21,13 @@ Index: hdf5/config/lt_vers.am
 ===
 --- hdf5.orig/config/lt_vers.am
 +++ hdf5/config/lt_vers.am
-@@ -18,7 +18,7 @@
+@@ -17,8 +17,8 @@
+ # Add libtool shared library version numbers to the HDF5 library
  # See libtool versioning documentation online.
  LT_VERS_INTERFACE = 8
- LT_VERS_REVISION = 2 
+-LT_VERS_REVISION = 2 
 -LT_VERS_AGE = 0
++LT_VERS_REVISION = 2
 +LT_VERS_AGE = 1
  
  ## If the API changes *at all*, increment LT_VERS_INTERFACE and

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[hdf5] 06/11: Refresh patches

2014-05-29 Thread Gilles Filippini
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pini pushed a commit to branch master
in repository hdf5.

commit a45ac8d1d6f4f8826f3d414164e7a97d9d323b9b
Author: Gilles Filippini p...@debian.org
Date:   Sun May 25 22:28:11 2014 +0200

Refresh patches
---
 debian/patches/path_max.diff | 14 +++---
 debian/patches/relax-version-check.patch |  6 +++---
 debian/patches/soname.diff   |  6 +++---
 3 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/debian/patches/path_max.diff b/debian/patches/path_max.diff
index 269bf54..100ba39 100644
--- a/debian/patches/path_max.diff
+++ b/debian/patches/path_max.diff
@@ -3,11 +3,11 @@ Description: avoid the issue of PATH_MAX not being available 
on Hurd.
  for making hdf5 compile and available in Debian.
 Author: Pino Toscano toscano.p...@tiscali.it
 Bug-Debian: http://bugs.debian.org/627896
-Index: hdf5-1.8.11/src/H5F.c
+Index: hdf5/src/H5F.c
 ===
 hdf5-1.8.11.orig/src/H5F.c 2013-07-02 16:40:55.621612700 +0200
-+++ hdf5-1.8.11/src/H5F.c  2013-07-02 16:40:55.613612700 +0200
-@@ -129,6 +129,10 @@
+--- hdf5.orig/src/H5F.c
 hdf5/src/H5F.c
+@@ -128,6 +128,10 @@ static const H5I_class_t H5I_FILE_CLS[1]
  }};
  
  
@@ -18,10 +18,10 @@ Index: hdf5-1.8.11/src/H5F.c
  
  /*-
   * Function:  H5F_init
-Index: hdf5-1.8.11/testpar/t_cache.c
+Index: hdf5/testpar/t_cache.c
 ===
 hdf5-1.8.11.orig/testpar/t_cache.c 2013-07-02 16:40:55.621612700 +0200
-+++ hdf5-1.8.11/testpar/t_cache.c  2013-07-02 16:40:55.617612700 +0200
+--- hdf5.orig/testpar/t_cache.c
 hdf5/testpar/t_cache.c
 @@ -35,6 +35,10 @@
  
  #include H5Fpkg.h
diff --git a/debian/patches/relax-version-check.patch 
b/debian/patches/relax-version-check.patch
index 63c17f0..ec1d0c8 100644
--- a/debian/patches/relax-version-check.patch
+++ b/debian/patches/relax-version-check.patch
@@ -8,9 +8,9 @@ Author: Julian Taylor jtay...@ubuntu.com
 Bug-Debian: http://bugs.debian.org/693610
 Index: hdf5/src/H5.c
 ===
 hdf5.orig/src/H5.c 2013-11-30 15:09:12.0 +0100
-+++ hdf5/src/H5.c  2013-11-30 15:09:12.0 +0100
-@@ -668,8 +668,7 @@
+--- hdf5.orig/src/H5.c
 hdf5/src/H5.c
+@@ -678,8 +678,7 @@ H5check_version(unsigned majnum, unsigne
  disable_version_check = (unsigned int)HDstrtol (s, NULL, 0);
  }
  
diff --git a/debian/patches/soname.diff b/debian/patches/soname.diff
index 78f8c34..5256e95 100644
--- a/debian/patches/soname.diff
+++ b/debian/patches/soname.diff
@@ -19,12 +19,12 @@ Description: Rollback upstream change from soname 7 = 8.
 Author: Sylvestre Ledru sylvestre.le...@scilab-enterprises.com
 Index: hdf5/config/lt_vers.am
 ===
 hdf5.orig/config/lt_vers.am2013-12-07 15:20:15.0 +0100
-+++ hdf5/config/lt_vers.am 2013-12-07 15:22:32.0 +0100
+--- hdf5.orig/config/lt_vers.am
 hdf5/config/lt_vers.am
 @@ -18,7 +18,7 @@
  # See libtool versioning documentation online.
  LT_VERS_INTERFACE = 8
- LT_VERS_REVISION = 1
+ LT_VERS_REVISION = 2 
 -LT_VERS_AGE = 0
 +LT_VERS_AGE = 1
  

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[hdf5] 10/11: debian/changelog update

2014-05-29 Thread Gilles Filippini
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pini pushed a commit to branch master
in repository hdf5.

commit 4157c244f4b74a3e6e7d1286c65827d7cba54bbc
Author: Gilles Filippini p...@debian.org
Date:   Mon May 26 17:48:37 2014 +0200

debian/changelog update
---
 debian/changelog | 6 +-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index a9d0e2e..95d344d 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,10 @@
 hdf5 (1.8.13+docs-1) UNRELEASED; urgency=medium
 
-  * New upstream release.
+  * New upstream release
+  * MPI-POSIX driver removed by upstream. Applications performing parallel
+I/O should use the MPI-IO driver, H5Pset_fapl_mpio
+  * SONAME bump?
+
   * Repack upstream docs:
 - Drop useless MacOS resource fork file
 - Drop generated files:

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[hdf5] 03/11: Merge tag 'upstream/1.8.13+docs'

2014-05-29 Thread Gilles Filippini
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pini pushed a commit to branch master
in repository hdf5.

commit 367967f9080424fd9dd57cb3897baf3d6af5ca32
Merge: f9e94e1 18d064c
Author: Gilles Filippini p...@debian.org
Date:   Sun May 25 17:05:23 2014 +0200

Merge tag 'upstream/1.8.13+docs'

Upstream version 1.8.13+docs

 CMakeFilters.cmake |  186 +-
 CMakeInstallation.cmake|  391 +--
 CMakeLists.txt | 1054 
 COPYING|2 +-
 CTestConfig.cmake  |   36 +-
 MANIFEST   |   47 +-
 Makefile.in|  220 +-
 README.txt |2 +-
 UserMacros.cmake   |8 +-
 aclocal.m4 |  353 ++-
 bin/cmakehdf5  |  127 +-
 bin/missing|  450 ++--
 bin/release|  108 +-
 bin/snapshot   |2 +-
 bin/test-driver|  139 +
 bin/trace  |1 +
 c++/CMakeLists.txt |   38 +-
 c++/Makefile.in|  540 +++-
 c++/examples/CMakeLists.txt|   32 +-
 c++/examples/CMakeTests.cmake  |   62 +-
 c++/examples/Makefile.am   |4 +-
 c++/examples/Makefile.in   |  468 +++-
 c++/src/CMakeLists.txt |   38 +-
 c++/src/H5Attribute.cpp|  180 +-
 c++/src/H5Attribute.h  |8 +-
 c++/src/H5CommonFG.cpp |  171 +-
 c++/src/H5CommonFG.h   |   14 +-
 c++/src/H5CompType.cpp |   21 +-
 c++/src/H5CompType.h   |3 +
 c++/src/H5DataSet.cpp  |   74 +-
 c++/src/H5DataSet.h|   10 +-
 c++/src/H5DataSpace.cpp|   16 +-
 c++/src/H5DataSpace.h  |4 +-
 c++/src/H5DataType.cpp |   36 +-
 c++/src/H5DataType.h   |8 +-
 c++/src/H5DcreatProp.cpp   |9 +-
 c++/src/H5DxferProp.cpp|  127 +-
 c++/src/H5DxferProp.h  |   11 +
 c++/src/H5EnumType.cpp |4 +-
 c++/src/H5Exception.cpp|   72 +-
 c++/src/H5Exception.h  |   33 +-
 c++/src/H5FaccProp.cpp |   45 +-
 c++/src/H5FaccProp.h   |   27 +-
 c++/src/H5File.cpp |   19 +-
 c++/src/H5File.h   |   17 +-
 c++/src/H5Group.h  |7 +-
 c++/src/H5IdComponent.cpp  |   25 +-
 c++/src/H5IdComponent.h|3 +
 c++/src/H5Location.cpp |  150 +-
 c++/src/H5Location.h   |5 +-
 c++/src/H5Object.cpp   |  112 +
 c++/src/H5Object.h |8 +-
 c++/src/H5PropList.cpp |7 +-
 c++/src/Makefile.am|2 +-
 c++/src/Makefile.in|  483 +++-
 c++/src/cpp_doc_config | 2251 +++-
 c++/src/header_files/hdf_logo.jpg  |  Bin 0 - 1964 bytes
 c++/src/header_files/help.jpg  |  Bin 0 - 3280 bytes
 c++/test/CMakeLists.txt|   26 +-
 c++/test/CMakeTests.cmake  |   38 +-
 c++/test/Makefile.am   |9 +-
 c++/test/Makefile.in   |  539 +++-
 c++/test/dsets.cpp |   35 +-
 c++/test/h5cpputil.cpp |4 +-
 c++/test/h5cpputil.h   |   21 +-
 c++/test/tattr.cpp |  143 +-
 c++/test/tcompound.cpp |   90 +
 c++/test/tdspl.cpp |  147 ++
 c++/test/testhdf5.cpp  |   70 +-
 c++/test/tfile.cpp |1 +
 c++/test/tfilter.cpp   |2 +-
 c++/test/tobject.cpp   |  335 +++
 c++/test/trefer.cpp|   10 +-
 c++/test/ttypes.cpp|   29 +-
 

[hdf5] 01/11: Prepare import of upstream 1.8.13

2014-05-29 Thread Gilles Filippini
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pini pushed a commit to branch master
in repository hdf5.

commit f9e94e10e603d2234bbc475eef23fc8cbdbe5755
Author: Gilles Filippini p...@debian.org
Date:   Sun May 25 17:04:17 2014 +0200

Prepare import of upstream 1.8.13

Exclude directory cpplus_RM_to1.8.12 from documentation.
---
 debian/orig-tar.exclude | 1 +
 debian/orig-tar.sh  | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/debian/orig-tar.exclude b/debian/orig-tar.exclude
index 635ac48..195fc2c 100644
--- a/debian/orig-tar.exclude
+++ b/debian/orig-tar.exclude
@@ -2,6 +2,7 @@ html/PSandPDF
 html/Specifications
 html/HL/Examples
 html/Specs.html
+html/cpplus_RM_to1.8.12
 html/Makefile.*
 html/*/Makefile.*
 html/*/*/Makefile.*
diff --git a/debian/orig-tar.sh b/debian/orig-tar.sh
index ed06ac5..4d1c221 100755
--- a/debian/orig-tar.sh
+++ b/debian/orig-tar.sh
@@ -6,7 +6,7 @@
 set -e
 
 UPSTREAM_VERSION=$2
-UPSTREAM_VERSION_DOC=$UPSTREAM_VERSION+docs1
+UPSTREAM_VERSION_DOC=$UPSTREAM_VERSION+docs
 PACKAGE=$(basename $3 _$UPSTREAM_VERSION.orig.tar.gz)
 
 SOURCE_DIR=$PACKAGE-$UPSTREAM_VERSION

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[hdf5] 11/11: SONAME bump to 8

2014-05-29 Thread Gilles Filippini
This is an automated email from the git hooks/post-receive script.

pini pushed a commit to branch master
in repository hdf5.

commit d5e2277b44124cf924172f444a7f41318d851486
Author: Gilles Filippini p...@debian.org
Date:   Mon May 26 18:58:33 2014 +0200

SONAME bump to 8
---
 debian/changelog   |  2 +-
 debian/check-dep-on-hdf5-cpp   |  2 +-
 debian/control | 90 --
 debian/control.in  | 28 ---
 debian/{libhdf5-7.symbols = libhdf5-8.symbols}|  8 +-
 debian/libhdf5-cpp-7.lintian-overrides |  1 -
 debian/libhdf5-cpp-8.lintian-overrides |  1 +
 ...libhdf5-cpp-7.symbols = libhdf5-cpp-8.symbols} |  4 +-
 debian/libhdf5-mpich-7.lintian-overrides   |  2 -
 debian/libhdf5-mpich-8.lintian-overrides   |  2 +
 ...df5-mpich-7.symbols = libhdf5-mpich-8.symbols} |  8 +-
 debian/libhdf5-openmpi-7.lintian-overrides |  2 -
 debian/libhdf5-openmpi-8.lintian-overrides |  2 +
 ...openmpi-7.symbols = libhdf5-openmpi-8.symbols} |  8 +-
 debian/patches/soname.diff | 27 +--
 debian/rules   |  2 +-
 debian/source.lintian-overrides|  3 -
 17 files changed, 57 insertions(+), 135 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 95d344d..2f60d72 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,7 +3,7 @@ hdf5 (1.8.13+docs-1) UNRELEASED; urgency=medium
   * New upstream release
   * MPI-POSIX driver removed by upstream. Applications performing parallel
 I/O should use the MPI-IO driver, H5Pset_fapl_mpio
-  * SONAME bump?
+  * SONAME bump to 8
 
   * Repack upstream docs:
 - Drop useless MacOS resource fork file
diff --git a/debian/check-dep-on-hdf5-cpp b/debian/check-dep-on-hdf5-cpp
index 86c2c00..b710c6e 100755
--- a/debian/check-dep-on-hdf5-cpp
+++ b/debian/check-dep-on-hdf5-cpp
@@ -15,7 +15,7 @@ trap 'cleanup' EXIT TERM ABRT INT
 wkdir=$(mktemp -d)
 cd $wkdir
 
-for pkg in $(apt-cache rdepends libhdf5-7 | grep -v '^' | tail -n +3 | 
sort -u | sed 's/^  //' | grep -v '^libhdf5-'); do
+for pkg in $(apt-cache rdepends libhdf5-8 | grep -v '^' | tail -n +3 | 
sort -u | sed 's/^  //' | grep -v '^libhdf5-'); do
   /usr/bin/aptitude download $pkg /dev/null
 done
 for pkgfile in $(ls *.deb); do
diff --git a/debian/control b/debian/control
index 526b3e2..e07621d 100644
--- a/debian/control
+++ b/debian/control
@@ -14,13 +14,13 @@ Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-grass/hdf5.git
 Vcs-Git: git://anonscm.debian.org/pkg-grass/hdf5.git
 
-Package: libhdf5-7
+Package: libhdf5-8
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Pre-Depends: ${misc:Pre-Depends}
-Conflicts: libhdf5-7
-Provides: libhdf5-7
+Conflicts: libhdf5-8
+Provides: libhdf5-8
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data.
@@ -30,13 +30,13 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
  .
  This package contains runtime files for serial platforms.
 
-Package: libhdf5-7-dbg
+Package: libhdf5-8-dbg
 Section: debug
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends},
- libhdf5-7 (= ${binary:Version})
-Conflicts: libhdf5-mpich-7-dbg, libhdf5-openmpi-7-dbg
+ libhdf5-8 (= ${binary:Version})
+Conflicts: libhdf5-mpich-8-dbg, libhdf5-openmpi-8-dbg
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - Debug package
  HDF5 is a file format and library for storing scientific data.
@@ -46,15 +46,13 @@ Description: Hierarchical Data Format 5 (HDF5) - Debug 
package
  .
  This package contains debug libraries.
 
-Package: libhdf5-cpp-7
+Package: libhdf5-cpp-8
 Section: libs
 Architecture: any
 Depends:
  ${shlibs:Depends},
  ${misc:Depends},
- libhdf5-7 (= ${binary:Version}),
-Replaces: libhdf5-7 ( 1.8.12~)
-Breaks: libhdf5-7 ( 1.8.12~)
+ libhdf5-8 (= ${binary:Version}),
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - C++ libraries
  HDF5 is a file format and library for storing scientific data.
@@ -64,14 +62,14 @@ Description: Hierarchical Data Format 5 (HDF5) - C++ 
libraries
  .
  This package contains C++ libraries.
 
-Package: libhdf5-cpp-7-dbg
+Package: libhdf5-cpp-8-dbg
 Section: debug
 Priority: extra
 Architecture: any
 Depends:
  ${shlibs:Depends},
  ${misc:Depends},
- libhdf5-cpp-7 (= ${binary:Version}), libhdf5-7-dbg (= ${binary:Version})
+ libhdf5-cpp-8 (= ${binary:Version}), libhdf5-8-dbg (= ${binary:Version})
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - C++ Debug package
  HDF5 is a file format and library for storing scientific data.
@@ -84,8 +82,8 @@ Description: Hierarchical Data Format 5 (HDF5) - C++ Debug 
package
 Package: 

[hdf5] branch master updated (8b4c915 - d5e2277)

2014-05-29 Thread Gilles Filippini
This is an automated email from the git hooks/post-receive script.

pini pushed a change to branch master
in repository hdf5.

  from  8b4c915   debian/changelog update
   new  f9e94e1   Prepare import of upstream 1.8.13
   new  18d064c   Imported Upstream version 1.8.13+docs
   new  367967f   Merge tag 'upstream/1.8.13+docs'
   new  36521bd   Bump version in pkg-config files
   new  e23cd5b   debian/changelog update
   new  a45ac8d   Refresh patches
   new  1487694   Update symbols files
   new  b2b0cdf   Output directory for C++ html doc was changed
   new  ddd8ee3   Keep SONAME 7 for now until we decide something
   new  4157c24   debian/changelog update
   new  d5e2277   SONAME bump to 8

The 11 revisions listed above as new are entirely new to this
repository and will be described in separate emails.  The revisions
listed as adds were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeFilters.cmake |  186 +-
 CMakeInstallation.cmake|  391 +--
 CMakeLists.txt | 1054 
 COPYING|2 +-
 CTestConfig.cmake  |   36 +-
 MANIFEST   |   47 +-
 Makefile.in|  220 +-
 README.txt |2 +-
 UserMacros.cmake   |8 +-
 aclocal.m4 |  353 ++-
 bin/cmakehdf5  |  127 +-
 bin/missing|  450 ++--
 bin/release|  108 +-
 bin/snapshot   |2 +-
 bin/test-driver|  139 +
 bin/trace  |1 +
 c++/CMakeLists.txt |   38 +-
 c++/Makefile.in|  540 +++-
 c++/examples/CMakeLists.txt|   32 +-
 c++/examples/CMakeTests.cmake  |   62 +-
 c++/examples/Makefile.am   |4 +-
 c++/examples/Makefile.in   |  468 +++-
 c++/src/CMakeLists.txt |   38 +-
 c++/src/H5Attribute.cpp|  180 +-
 c++/src/H5Attribute.h  |8 +-
 c++/src/H5CommonFG.cpp |  171 +-
 c++/src/H5CommonFG.h   |   14 +-
 c++/src/H5CompType.cpp |   21 +-
 c++/src/H5CompType.h   |3 +
 c++/src/H5DataSet.cpp  |   74 +-
 c++/src/H5DataSet.h|   10 +-
 c++/src/H5DataSpace.cpp|   16 +-
 c++/src/H5DataSpace.h  |4 +-
 c++/src/H5DataType.cpp |   36 +-
 c++/src/H5DataType.h   |8 +-
 c++/src/H5DcreatProp.cpp   |9 +-
 c++/src/H5DxferProp.cpp|  127 +-
 c++/src/H5DxferProp.h  |   11 +
 c++/src/H5EnumType.cpp |4 +-
 c++/src/H5Exception.cpp|   72 +-
 c++/src/H5Exception.h  |   33 +-
 c++/src/H5FaccProp.cpp |   45 +-
 c++/src/H5FaccProp.h   |   27 +-
 c++/src/H5File.cpp |   19 +-
 c++/src/H5File.h   |   17 +-
 c++/src/H5Group.h  |7 +-
 c++/src/H5IdComponent.cpp  |   25 +-
 c++/src/H5IdComponent.h|3 +
 c++/src/H5Location.cpp |  150 +-
 c++/src/H5Location.h   |5 +-
 c++/src/H5Object.cpp   |  112 +
 c++/src/H5Object.h |8 +-
 c++/src/H5PropList.cpp |7 +-
 c++/src/Makefile.am|2 +-
 c++/src/Makefile.in|  483 +++-
 c++/src/cpp_doc_config | 2251 +++-
 c++/src/header_files/hdf_logo.jpg  |  Bin 0 - 1964 bytes
 {html/Graphics = c++/src/header_files}/help.jpg   |  Bin
 c++/test/CMakeLists.txt|   26 +-
 c++/test/CMakeTests.cmake  |   38 +-
 c++/test/Makefile.am   |9 +-
 c++/test/Makefile.in   |  539 +++-
 c++/test/dsets.cpp |   35 +-
 c++/test/h5cpputil.cpp |4 

[hdf5] 08/11: Output directory for C++ html doc was changed

2014-05-29 Thread Gilles Filippini
This is an automated email from the git hooks/post-receive script.

pini pushed a commit to branch master
in repository hdf5.

commit b2b0cdf2b0e6a8fbb879bb2d3fa2d6277afed5ad
Author: Gilles Filippini p...@debian.org
Date:   Mon May 26 15:50:59 2014 +0200

Output directory for C++ html doc was changed

From cpplus_RM to HTML/HTML.
---
 debian/rules | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/debian/rules b/debian/rules
index a7e799b..935829f 100755
--- a/debian/rules
+++ b/debian/rules
@@ -178,7 +178,7 @@ build-stamp-mpich: configure-stamp-mpich
 build-stamp-doc: configure-stamp
cd c++/src  doxygen cpp_doc_config_u /dev/null
rm -rf html/cpplus_RM
-   mv c++/src/cpplus_RM html/
+   mv c++/src/HTML/HTML html/cpplus_RM
touch $@
 
 #
@@ -197,7 +197,7 @@ clean:
dh_autoreconf_clean
rm -rf m4
-cd debian  rm -f `ls libhdf5-*.install libhdf5-*.shlibs 
libhdf5-*.doc | grep -v 'libhdf5-doc'`
-   -rm -rf c++/src/cpplus_RM
+   -rm -rf c++/src/HTML
-rm -rf html/cpplus_RM
-rm -f c++/src/cpp_doc_config_u*
dh_clean configure-stamp* build-stamp* install-stamp*

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[hdf5] 04/11: Bump version in pkg-config files

2014-05-29 Thread Gilles Filippini
This is an automated email from the git hooks/post-receive script.

pini pushed a commit to branch master
in repository hdf5.

commit 36521bd26340a47cb9c8ef3925db1194802aedd5
Author: Gilles Filippini p...@debian.org
Date:   Sun May 25 22:17:59 2014 +0200

Bump version in pkg-config files
---
 debian/hdf5-mpich.pc   | 2 +-
 debian/hdf5-openmpi.pc | 2 +-
 debian/hdf5.pc | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/debian/hdf5-mpich.pc b/debian/hdf5-mpich.pc
index ccbfac6..fe4c058 100644
--- a/debian/hdf5-mpich.pc
+++ b/debian/hdf5-mpich.pc
@@ -1,6 +1,6 @@
 Name: HDF5
 Description: Hierarchical Data Format 5 (HDF5) - MPICH version
-Version: 1.8.12
+Version: 1.8.13
 Requires: mpich
 Cflags:
 Libs: -lhdf5
diff --git a/debian/hdf5-openmpi.pc b/debian/hdf5-openmpi.pc
index c88bf27..1fa7a41 100644
--- a/debian/hdf5-openmpi.pc
+++ b/debian/hdf5-openmpi.pc
@@ -1,6 +1,6 @@
 Name: HDF5
 Description: Hierarchical Data Format 5 (HDF5) - OpenMPI version
-Version: 1.8.12
+Version: 1.8.13
 Requires:
 Cflags: -I/usr/include/openmpi
 Libs: -lhdf5 -L/usr/lib/openmpi/lib -lmpi
diff --git a/debian/hdf5.pc b/debian/hdf5.pc
index a4cade3..e4a0da8 100644
--- a/debian/hdf5.pc
+++ b/debian/hdf5.pc
@@ -1,6 +1,6 @@
 Name: HDF5
 Description: Hierarchical Data Format 5 (HDF5)
-Version: 1.8.12
+Version: 1.8.13
 Requires:
 Cflags:
 Libs: -lhdf5

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[hdf5] 05/11: debian/changelog update

2014-05-29 Thread Gilles Filippini
This is an automated email from the git hooks/post-receive script.

pini pushed a commit to branch master
in repository hdf5.

commit e23cd5bc6b81ec25cc30fa99766a21c88d4c7c16
Author: Gilles Filippini p...@debian.org
Date:   Sun May 25 22:19:00 2014 +0200

debian/changelog update
---
 debian/changelog | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 8d81046..a9d0e2e 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,7 +1,7 @@
-hdf5 (1.8.12+docs1-1) UNRELEASED; urgency=medium
+hdf5 (1.8.13+docs-1) UNRELEASED; urgency=medium
 
+  * New upstream release.
   * Repack upstream docs:
-- Update to upstream r5163 from their hdf5_1_8_12 svn branch
 - Drop useless MacOS resource fork file
 - Drop generated files:
   . Generate C++ doc at build time with doxygen

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[hdf5] 01/02: Make serial and $mpi flavors co-installable

2014-05-29 Thread Gilles Filippini
This is an automated email from the git hooks/post-receive script.

pini pushed a commit to branch experimental
in repository hdf5.

commit fef081c781f9cad664882242eea286e63992c8c5
Author: Gilles Filippini p...@debian.org
Date:   Wed May 28 19:07:52 2014 +0200

Make serial and $mpi flavors co-installable

* Patch autotools configuration to add option --with-flavor which
  append _flavor-name to the libraries' names
* Configure $mpi builds with flavor-name=$mpi
* link $mpi flavor development libs to
  /usr/lib/$MULTIARCH/$mpi/libhdf5-legacy-names (so that existing
  makefiles still work using -L/usr/lib/$MULTIARCH/$mpi)
* install $mpi flavor include files into /usr/include/$mpi (so
  that existing makefiles still work using -I/usr/include/$mpi)
* Use alternatives to choose default h5p{cf}c
* Deactivate patch skip_cxx_inclusion.diff
* Reflect theses changes in symbols files
* Remove related Conflicts / Provides from debian/control*
---
 debian/control   |  28 +-
 debian/control.in|  28 +-
 debian/hdf5-mpich.pc |   2 +-
 debian/hdf5-openmpi.pc   |   2 +-
 debian/libhdf5-flavor-cpp-soname.install.in  |   4 +-
 debian/libhdf5-flavor-dev.install.in |   6 +-
 debian/libhdf5-flavor-dev.links.in   |   9 +
 debian/libhdf5-flavor-dev.postinst.in|  15 +
 debian/libhdf5-flavor-dev.prerm.in   |  14 +
 debian/libhdf5-flavor-soname.install.in  |   8 +-
 debian/libhdf5-mpich-dev.manpages|   4 +-
 debian/libhdf5-openmpi-dev.manpages  |   4 +-
 debian/patches/flavor-configure-option.patch | 445 +++
 debian/patches/series|   3 +-
 debian/rules |  46 ++-
 15 files changed, 560 insertions(+), 58 deletions(-)

diff --git a/debian/control b/debian/control
index e07621d..48dfa53 100644
--- a/debian/control
+++ b/debian/control
@@ -19,8 +19,8 @@ Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Pre-Depends: ${misc:Pre-Depends}
-Conflicts: libhdf5-8
-Provides: libhdf5-8
+#Conflicts: libhdf5-8
+#Provides: libhdf5-8
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data.
@@ -36,7 +36,7 @@ Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends},
  libhdf5-8 (= ${binary:Version})
-Conflicts: libhdf5-mpich-8-dbg, libhdf5-openmpi-8-dbg
+#Conflicts: libhdf5-mpich-8-dbg, libhdf5-openmpi-8-dbg
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - Debug package
  HDF5 is a file format and library for storing scientific data.
@@ -102,8 +102,8 @@ Priority: extra
 Architecture: alpha arm64 armel armhf amd64 i386 ia64 mips mipsel powerpc 
powerpcspe ppc64 sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Pre-Depends: ${misc:Pre-Depends}
-Conflicts: libhdf5-8
-Provides: libhdf5-8
+#Conflicts: libhdf5-8
+#Provides: libhdf5-8
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data.
@@ -119,8 +119,8 @@ Priority: extra
 Architecture: alpha arm64 armel armhf amd64 i386 ia64 mips mipsel powerpc 
powerpcspe ppc64 sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
 Depends: libhdf5-openmpi-8 (= ${binary:Version}), zlib1g-dev,
  libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helpers
-Conflicts: libhdf5-dev
-Provides: libhdf5-dev
+#Conflicts: libhdf5-dev
+#Provides: libhdf5-dev
 Suggests: libhdf5-doc
 Description: Hierarchical Data Format 5 (HDF5) - development files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data.
@@ -136,7 +136,7 @@ Priority: extra
 Architecture: alpha arm64 armel armhf amd64 i386 ia64 mips mipsel powerpc 
powerpcspe ppc64 sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
 Depends: ${shlibs:Depends}, ${misc:Depends},
  libhdf5-openmpi-8 (= ${binary:Version}),
-Conflicts: libhdf5-8-dbg, libhdf5-mpich-8-dbg
+#Conflicts: libhdf5-8-dbg, libhdf5-mpich-8-dbg
 Multi-Arch: same
 Description: Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package
  HDF5 is a file format and library for storing scientific data.
@@ -152,8 +152,8 @@ Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Pre-Depends: ${misc:Pre-Depends}
-Conflicts: libhdf5-8
-Provides: libhdf5-8, libhdf5-mpich2-8
+#Conflicts: libhdf5-8
+#Provides: libhdf5-8, libhdf5-mpich2-8
 Replaces: libhdf5-mpich2-8 ( 1.8.12-2~)
 Breaks: libhdf5-mpich2-8 ( 1.8.12-2~)
 Multi-Arch: same
@@ -172,8 +172,8 @@ Priority: extra
 Architecture: any
 Depends: libhdf5-mpich-8 (= ${binary:Version}), zlib1g-dev,
  libjpeg-dev, libmpich-dev, ${misc:Depends}, hdf5-helpers
-Conflicts: libhdf5-dev
-Provides: libhdf5-dev, libhdf5-mpich2-dev
+#Conflicts: 

Re: Plea to fix the [ parallel | serial ] HDF5 problem

2014-05-29 Thread Gilles Filippini
Alastair McKinstry a écrit , Le 29/05/2014 11:19:
 Following Alastair's proposal I've adapted my previous try on this
 topic. Here is a summary of the proposed changes from my local git log:
 Make serial and $mpi flavors co-installable

 * Patch autotools configuration to add option --with-flavor which
   append _flavor-name to the libraries' names
 * Configure $mpi builds with flavor-name=$mpi
 * link $mpi flavor development libs to
   /usr/lib/$MULTIARCH/$mpi/libhdf5-legacy-names (so that existing
   makefiles still work using -L/usr/lib/$MULTIARCH/$mpi)
 * install $mpi flavor include files into /usr/include/$mpi (so
   that existing makefiles still work using -I/usr/include/$mpi)
 * Use alternatives to choose default h5p{cf}c
 * Deactivate patch skip_cxx_inclusion.diff
 * Remove related Conflicts / Provides from debian/control*

 I've successfully tested the co-installation with all packages and the
 build of an example using each flavor.

 All this work was done against upstream release 1.8.13. I've had to bump
 the soname to 8 because of the MPI-POSIX driver removal [1].

 Of course this will require a transition.

 Any comments before I upload to experimental?

 Thanks in advance,

 [1] http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

 _g.


 Are you using ELF symbol versioning, etc. to enable multiple HDF5 libs
 to be linked simultaneously?
 Otherwise if two lib chains use conflicting HDF5 versions, there will be
 conflicts.
 e.g. XDMF uses parallel HDF5, netcdf (currently) uses serial HDF5, both
 are (to be) linked into visit.

No, I didn't think about this use case.

 I'm still thinking through some details of the design, especially how to
 test and how we handle upgrades. I think we can do the following:
 (1) Use HDF5_$(MPI)_$(VER) as a symbol prefix. [2]
 (2) Add aliases for HDF5_$(VER) to these for the general case.
 (3) Use weak symbols for the non-threadsafe (ie. parallel) versions [3]

 I need to test this, though.

 The test cases are that existing programs need to work, so symbols for
 hdf5_* need to resolve, and
 upgrades need to work, with three cases to test, serial, parallel and
 both installed.

 [2] http://ftp.gnu.org/old-gnu/Manuals/ld-2.9.1/html_node/ld_25.html
 [3] http://en.wikipedia.org/wiki/Weak_symbols

Well... I don't know about symbol versioning / prefixing / aliasing and
the pointers you gave don't tell me much about it, actually. How would
you implement that? Any example at hand?

I've pushed my changes to the experimental branch of the git repo for
hdf5 packaging so you can have a look.

Thanks,

_g.



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Bug#749752: RFS: spatialite-gui/1.7.1-4 [RC]

2014-05-29 Thread Bas Couwenberg
Package: sponsorship-requests
Severity: important

Dear mentors,

I am looking for a sponsor for my package spatialite-gui

 Package name: spatialite-gui
 Version : 1.7.1-4
 Upstream Author : Alessandro Furieri a.furi...@lqt.it
 URL : https://www.gaia-gis.it/fossil/spatialite_gui/
 License : GPL-3.0+
 Section : utils

It builds those binary packages:

 spatialite-gui - user-friendly graphical user interface for SpatiaLite
 spatialite-gui-dbg - user-friendly graphical user interface for spatialite - 
debugging symbols

To access further information about this package, please visit the following 
URL:

http://mentors.debian.net/package/spatialite-gui


Alternatively, one can download the package with dget using this command:

  dget -x 
http://mentors.debian.net/debian/pool/main/s/spatialite-gui/spatialite-gui_1.7.1-4.dsc

More information about spatialite-gui can be obtained from 
https://www.gaia-gis.it/fossil/spatialite_gui/.

Changes since the last upload:

  [ Olly Betts ]
  * Update to use wxWidgets 3.0.
(closes: #748085)

  [ Bas Couwenberg ]
  * Drop lintian override for no-upstream-changelog,
shouldn't override pedantic tags.


Regards,
 Bas Couwenberg

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[spatialite-gui] branch master updated (847a62f - 5c4e0e4)

2014-05-29 Thread Bas Couwenberg
This is an automated email from the git hooks/post-receive script.

sebastic-guest pushed a change to branch master
in repository spatialite-gui.

  from  847a62f   Move from experimental to unstable.
   new  5531f80   Update to use wxWidgets 3.0.
   new  cb10591   Drop lintian override for no-upstream-changelog, 
shouldn't override pedantic tags.
   new  5c4e0e4   Set distribution to unstable.

The 3 revisions listed above as new are entirely new to this
repository and will be described in separate emails.  The revisions
listed as adds were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog| 12 
 debian/control  |  3 +--
 debian/patches/04-wx3.0-compat.patch| 26 ++
 debian/patches/series   |  1 +
 debian/spatialite-gui-dbg.lintian-overrides |  3 ---
 debian/spatialite-gui.lintian-overrides |  4 
 6 files changed, 40 insertions(+), 9 deletions(-)
 create mode 100644 debian/patches/04-wx3.0-compat.patch
 delete mode 100644 debian/spatialite-gui-dbg.lintian-overrides

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[spatialite-gui] 03/03: Set distribution to unstable.

2014-05-29 Thread Bas Couwenberg
This is an automated email from the git hooks/post-receive script.

sebastic-guest pushed a commit to branch master
in repository spatialite-gui.

commit 5c4e0e4d5d5a2db2a1426271941432447e92b1c3
Author: Bas Couwenberg sebas...@xs4all.nl
Date:   Thu May 29 14:32:07 2014 +0200

Set distribution to unstable.
---
 debian/changelog | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 56e6ab1..31631a4 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-spatialite-gui (1.7.1-4) UNRELEASED; urgency=medium
+spatialite-gui (1.7.1-4) unstable; urgency=medium
 
   [ Olly Betts ]
   * Update to use wxWidgets 3.0.
@@ -8,7 +8,7 @@ spatialite-gui (1.7.1-4) UNRELEASED; urgency=medium
   * Drop lintian override for no-upstream-changelog,
 shouldn't override pedantic tags.
 
- -- Bas Couwenberg sebas...@xs4all.nl  Thu, 29 May 2014 13:58:36 +0200
+ -- Bas Couwenberg sebas...@xs4all.nl  Thu, 29 May 2014 14:31:52 +0200
 
 spatialite-gui (1.7.1-3) unstable; urgency=low
 

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[spatialite-gui] 02/03: Drop lintian override for no-upstream-changelog, shouldn't override pedantic tags.

2014-05-29 Thread Bas Couwenberg
This is an automated email from the git hooks/post-receive script.

sebastic-guest pushed a commit to branch master
in repository spatialite-gui.

commit cb10591f5effbf33c09f5d9e438507f7fee41477
Author: Bas Couwenberg sebas...@xs4all.nl
Date:   Thu May 29 14:14:40 2014 +0200

Drop lintian override for no-upstream-changelog, shouldn't override 
pedantic tags.
---
 debian/changelog| 4 
 debian/spatialite-gui-dbg.lintian-overrides | 3 ---
 debian/spatialite-gui.lintian-overrides | 4 
 3 files changed, 4 insertions(+), 7 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index c948d57..56e6ab1 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,10 @@ spatialite-gui (1.7.1-4) UNRELEASED; urgency=medium
   * Update to use wxWidgets 3.0.
 (closes: #748085)
 
+  [ Bas Couwenberg ]
+  * Drop lintian override for no-upstream-changelog,
+shouldn't override pedantic tags.
+
  -- Bas Couwenberg sebas...@xs4all.nl  Thu, 29 May 2014 13:58:36 +0200
 
 spatialite-gui (1.7.1-3) unstable; urgency=low
diff --git a/debian/spatialite-gui-dbg.lintian-overrides 
b/debian/spatialite-gui-dbg.lintian-overrides
deleted file mode 100644
index 708b585..000
--- a/debian/spatialite-gui-dbg.lintian-overrides
+++ /dev/null
@@ -1,3 +0,0 @@
-# Changes available only in the upstream VCS:
-# https://www.gaia-gis.it/fossil/spatialite_gui/timeline
-spatialite-gui-dbg: no-upstream-changelog
diff --git a/debian/spatialite-gui.lintian-overrides 
b/debian/spatialite-gui.lintian-overrides
index 12f5637..eb1189f 100644
--- a/debian/spatialite-gui.lintian-overrides
+++ b/debian/spatialite-gui.lintian-overrides
@@ -1,6 +1,2 @@
-# Changes available only in the upstream VCS:
-# https://www.gaia-gis.it/fossil/spatialite_gui/timeline
-spatialite-gui: no-upstream-changelog
-
 # Man page not useful for GUI program
 spatialite-gui: binary-without-manpage usr/bin/spatialite-gui

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[spatialite-gui] 01/03: Update to use wxWidgets 3.0.

2014-05-29 Thread Bas Couwenberg
This is an automated email from the git hooks/post-receive script.

sebastic-guest pushed a commit to branch master
in repository spatialite-gui.

commit 5531f801a8e5191cf7f47caa6f8f3030eacdc740
Author: Bas Couwenberg sebas...@xs4all.nl
Date:   Thu May 29 14:04:14 2014 +0200

Update to use wxWidgets 3.0.
---
 debian/changelog |  8 
 debian/control   |  3 +--
 debian/patches/04-wx3.0-compat.patch | 26 ++
 debian/patches/series|  1 +
 4 files changed, 36 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index d507859..c948d57 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+spatialite-gui (1.7.1-4) UNRELEASED; urgency=medium
+
+  [ Olly Betts ]
+  * Update to use wxWidgets 3.0.
+(closes: #748085)
+
+ -- Bas Couwenberg sebas...@xs4all.nl  Thu, 29 May 2014 13:58:36 +0200
+
 spatialite-gui (1.7.1-3) unstable; urgency=low
 
   * Add gbp.conf to use pristine-tar by default.
diff --git a/debian/control b/debian/control
index 41b5e7a..cc168e9 100644
--- a/debian/control
+++ b/debian/control
@@ -8,8 +8,7 @@ Build-Depends: debhelper (= 9~),
dh-autoreconf,
pkg-config,
wx-common,
-   wx2.8-headers,
-   libwxgtk2.8-dev,
+   libwxgtk3.0-dev,
libspatialite-dev (= 4.1.1-5~),
libproj-dev,
libgeos-dev,
diff --git a/debian/patches/04-wx3.0-compat.patch 
b/debian/patches/04-wx3.0-compat.patch
new file mode 100644
index 000..d7b9afe
--- /dev/null
+++ b/debian/patches/04-wx3.0-compat.patch
@@ -0,0 +1,26 @@
+Description: Fix to build with wxwidgets 3.0
+Author: Olly Betts o...@survex.com
+Last-Update: 2014-05-01
+
+--- a/configure
 b/configure
+@@ -15543,7 +15543,7 @@ if test x$WX_CONFIG == xnot_found; then
+ fi
+ CXXFLAGS=$(wx-config --cxxflags)
+ AM_CXXFLAGS=$(wx-config --cxxflags)
+-WX_LIBS=$(wx-config --libs)
++WX_LIBS=$(wx-config --libs std,aui)
+ 
+ 
+ # Checks for header files.
+--- a/configure.ac
 b/configure.ac
+@@ -54,7 +54,7 @@ if test x$WX_CONFIG == xnot_found; then
+ fi
+ CXXFLAGS=$(wx-config --cxxflags)
+ AM_CXXFLAGS=$(wx-config --cxxflags)
+-WX_LIBS=$(wx-config --libs)
++WX_LIBS=$(wx-config --libs std,aui)
+ AC_SUBST(WX_LIBS)
+ 
+ # Checks for header files.
diff --git a/debian/patches/series b/debian/patches/series
index b8c0f86..1e72a8a 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,4 @@
 01-fix_binary_name.patch
 02-fix_typos.patch
 03-link-sqlite3.patch
+04-wx3.0-compat.patch

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Processed: Re: Bug#748085: spatialite-gui: Please update to use wxwidgets3.0

2014-05-29 Thread Debian Bug Tracking System
Processing control commands:

 tags -1 pending
Bug #748085 [spatialite-gui] spatialite-gui: Please update to use wxwidgets3.0
Added tag(s) pending.

-- 
748085: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=748085
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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Bug#748085: spatialite-gui: Please update to use wxwidgets3.0

2014-05-29 Thread Sebastiaan Couwenberg
Control: tags -1 pending

Hi Olly,

Thanks reporting this issue and for the patch.

I've fixed the package in git. And the updated package is available on
mentors, currently waiting for sponsorship (#749752).

Kind Regards,

Bas

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Processed: Re: Bug#742688: Plugins cannot be updated/installed

2014-05-29 Thread Debian Bug Tracking System
Processing control commands:

 forwarded -1 http://hub.qgis.org/issues/10391
Bug #742688 [qgis] Plugins cannot be updated/installed
Set Bug forwarded-to-address to 'http://hub.qgis.org/issues/10391'.

-- 
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Bug#742688: Plugins cannot be updated/installed

2014-05-29 Thread Sebastiaan Couwenberg
Control: forwarded -1 http://hub.qgis.org/issues/10391

Hi Francesco,

As suggested by Alex, I've forwarded your requests to the QGIS issue
tracker.

My apologies for not doing this sooner.

Kind Regards,

Bas

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[spatialite] tag debian/debian/3.0.0_beta20110817-2 deleted (was 81135bc)

2014-05-29 Thread Bas Couwenberg
This is an automated email from the git hooks/post-receive script.

sebastic-guest pushed a change to tag debian/debian/3.0.0_beta20110817-2
in repository spatialite.

*** WARNING: tag debian/debian/3.0.0_beta20110817-2 was deleted! ***

   was  81135bc   Fixed for FTBSes

The revisions that were on this tag are still contained in
other references; therefore, this change does not discard any commits
from the repository.

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Processing of spatialite-gui_1.7.1-4_amd64.changes

2014-05-29 Thread Debian FTP Masters
spatialite-gui_1.7.1-4_amd64.changes uploaded successfully to localhost
along with the files:
  spatialite-gui_1.7.1-4_amd64.deb
  spatialite-gui-dbg_1.7.1-4_amd64.deb
  spatialite-gui_1.7.1-4.dsc
  spatialite-gui_1.7.1.orig.tar.gz
  spatialite-gui_1.7.1-4.debian.tar.xz

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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spatialite-gui_1.7.1-4_amd64.changes ACCEPTED into unstable

2014-05-29 Thread Debian FTP Masters


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 29 May 2014 14:31:52 +0200
Source: spatialite-gui
Binary: spatialite-gui spatialite-gui-dbg
Architecture: source amd64
Version: 1.7.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
Changed-By: Bas Couwenberg sebas...@xs4all.nl
Description: 
 spatialite-gui - user-friendly graphical user interface for SpatiaLite
 spatialite-gui-dbg - user-friendly graphical user interface for spatialite - 
debugging
Closes: 748085
Changes: 
 spatialite-gui (1.7.1-4) unstable; urgency=medium
 .
   [ Olly Betts ]
   * Update to use wxWidgets 3.0.
 (closes: #748085)
 .
   [ Bas Couwenberg ]
   * Drop lintian override for no-upstream-changelog,
 shouldn't override pedantic tags.
Checksums-Sha1: 
 a402633687fe8124fe3f3af4fa8f3337db6780bd 2285 spatialite-gui_1.7.1-4.dsc
 3b9d88e84ffa5a4f913cf74b098532c2cd15398f 1090178 
spatialite-gui_1.7.1.orig.tar.gz
 0ef03ec00a86783c432e23f51d03a3f2c32ac292 6164 
spatialite-gui_1.7.1-4.debian.tar.xz
 892ce4a87bb979ab0e4b203ed302d7ddce6977a7 531940 
spatialite-gui_1.7.1-4_amd64.deb
 ef2b03e3ede2358fe2137969961c9c8dbe32fcbf 4656484 
spatialite-gui-dbg_1.7.1-4_amd64.deb
Checksums-Sha256: 
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spatialite-gui_1.7.1-4.dsc
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spatialite-gui-dbg_1.7.1-4_amd64.deb
Files: 
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spatialite-gui_1.7.1-4_amd64.deb
 377cb911db3b3f787beb1f457fb87865 4656484 debug extra 
spatialite-gui-dbg_1.7.1-4_amd64.deb
 214708849a324872c560c5987d68294d 2285 utils optional spatialite-gui_1.7.1-4.dsc
 c917f40810607784528b4db58cd36efb 1090178 utils optional 
spatialite-gui_1.7.1.orig.tar.gz
 d946f7b00fa6a6de5cfe7f7c5eee3810 6164 utils optional 
spatialite-gui_1.7.1-4.debian.tar.xz

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Thank you for your contribution to Debian.

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Bug#748085: marked as done (spatialite-gui: Please update to use wxwidgets3.0)

2014-05-29 Thread Debian Bug Tracking System
Your message dated Thu, 29 May 2014 17:49:19 +
with message-id e1wq4s7-0001u6...@franck.debian.org
and subject line Bug#748085: fixed in spatialite-gui 1.7.1-4
has caused the Debian Bug report #748085,
regarding spatialite-gui: Please update to use wxwidgets3.0
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
748085: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=748085
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: spatialite-gui
Version: 1.7.1-3
Severity: normal
Tags: patch
User: freewx-ma...@lists.alioth.debian.org
Usertags: wx3.0

Dear maintainer,

We're aiming to migrate the archive to using wxwidgets3.0 instead of
wxwidgets2.8.

I've rebuilt your package using the attached simple patch to make
configure find the required wx libraries.  It seems to run OK, but I
have no suitable spatial data to test it with so I haven't exercised it
very thoroughly.

I'm happy to NMU this change if you wish me to - just let me know.

Cheers,
Olly
diff -Nru spatialite-gui-1.7.1/debian/changelog spatialite-gui-1.7.1/debian/changelog
--- spatialite-gui-1.7.1/debian/changelog	2014-03-19 20:24:16.0 +1300
+++ spatialite-gui-1.7.1/debian/changelog	2014-05-01 19:55:07.0 +1200
@@ -1,3 +1,10 @@
+spatialite-gui (1.7.1-3.1) unstable; urgency=low
+
+  * Non-maintainer upload.
+  * Update to use wxWidgets 3.0.
+
+ -- Olly Betts o...@survex.com  Thu, 01 May 2014 19:55:07 +1200
+
 spatialite-gui (1.7.1-3) unstable; urgency=low
 
   * Add gbp.conf to use pristine-tar by default.
diff -Nru spatialite-gui-1.7.1/debian/control spatialite-gui-1.7.1/debian/control
--- spatialite-gui-1.7.1/debian/control	2014-03-19 20:24:16.0 +1300
+++ spatialite-gui-1.7.1/debian/control	2014-05-01 19:55:22.0 +1200
@@ -8,8 +8,7 @@
dh-autoreconf,
pkg-config,
wx-common,
-   wx2.8-headers,
-   libwxgtk2.8-dev,
+   libwxgtk3.0-dev,
libspatialite-dev (= 4.1.1-5~),
libproj-dev,
libgeos-dev,
diff -Nru spatialite-gui-1.7.1/debian/patches/series spatialite-gui-1.7.1/debian/patches/series
--- spatialite-gui-1.7.1/debian/patches/series	2014-03-19 20:24:16.0 +1300
+++ spatialite-gui-1.7.1/debian/patches/series	2014-05-01 20:04:00.0 +1200
@@ -2,3 +2,4 @@
 01-fix_binary_name.patch
 02-fix_typos.patch
 03-link-sqlite3.patch
+wx3.0-compat.patch
diff -Nru spatialite-gui-1.7.1/debian/patches/wx3.0-compat.patch spatialite-gui-1.7.1/debian/patches/wx3.0-compat.patch
--- spatialite-gui-1.7.1/debian/patches/wx3.0-compat.patch	1970-01-01 12:00:00.0 +1200
+++ spatialite-gui-1.7.1/debian/patches/wx3.0-compat.patch	2014-05-01 20:04:18.0 +1200
@@ -0,0 +1,26 @@
+Description: Fix to build with wxwidgets 3.0
+Author: Olly Betts o...@survex.com
+Last-Update: 2014-05-01
+
+--- spatialite-gui-1.7.1.orig/configure
 spatialite-gui-1.7.1/configure
+@@ -15543,7 +15543,7 @@ if test x$WX_CONFIG == xnot_found; then
+ fi
+ CXXFLAGS=$(wx-config --cxxflags)
+ AM_CXXFLAGS=$(wx-config --cxxflags)
+-WX_LIBS=$(wx-config --libs)
++WX_LIBS=$(wx-config --libs std,aui)
+ 
+ 
+ # Checks for header files.
+--- spatialite-gui-1.7.1.orig/configure.ac
 spatialite-gui-1.7.1/configure.ac
+@@ -54,7 +54,7 @@ if test x$WX_CONFIG == xnot_found; then
+ fi
+ CXXFLAGS=$(wx-config --cxxflags)
+ AM_CXXFLAGS=$(wx-config --cxxflags)
+-WX_LIBS=$(wx-config --libs)
++WX_LIBS=$(wx-config --libs std,aui)
+ AC_SUBST(WX_LIBS)
+ 
+ # Checks for header files.
---End Message---
---BeginMessage---
Source: spatialite-gui
Source-Version: 1.7.1-4

We believe that the bug you reported is fixed in the latest version of
spatialite-gui, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 748...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Bas Couwenberg sebas...@xs4all.nl (supplier of updated spatialite-gui package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 29 May 2014 14:31:52 +0200
Source: spatialite-gui
Binary: spatialite-gui spatialite-gui-dbg
Architecture: source amd64
Version: 1.7.1-4
Distribution: 

Re: Plea to fix the [ parallel | serial ] HDF5 problem

2014-05-29 Thread Gilles Filippini
Hi,

Gilles Filippini a écrit , Le 24/05/2014 11:58:
 Alastair McKinstry a écrit , Le 21/05/2014 15:40:
 The best solution I can think of is:
 (1) make the packages install into
 /usr/lib/$MPIV/...
 with $MPIV equalling either mpiversion (openmpi, mpich2, ...) or
 'serial', or 'any'.
 (2) Use alternatives to set a default.
 (3) Mangle the libnames as follows:
 /usr/lib/openmpi/lib/libhdf5.so --
 /usr/lib/$(DEB_HOST_MULTIARCH)/libhdf5_openmpi.so.7.1.1
 ie. adding _$(MPIV) to the libname.
 This results in a library that uses it being hard-coded to use that
 particular version, but
 (4) the version in /usr/lib/any/ does _not_ mangle the libname, but
 points to a version with
 libhdf5.so.7.1.1 with SONAME 'libhdf5.so.7', which is just a shell for
 linking against, but which itself
 is linked against a version (any, default serial) of the HDF5 libs.
 Hence any application which does not
 care of the given features (threadsafe, compression, parallelism) can
 use this version.
 Binaries built with it will resolve /usr/lib/*/libhdf5.so.7.1.1 pointing
 to the default version on the system.

 This will enable the building of a libnetcdf-$mpi version, for parallel
 writes, and other libraries.

 Any comments?
 
 I like the idea, especially part [3] which is the clever trick I was
 missing. But then do we actually need the /alternatives/ + /any/ stuff?
 Shouldn't [1] and [3] be sufficient? Application which do not care could
 just go with the serial version.

Following Alastair's proposal I've adapted my previous try on this
topic. Here is a summary of the proposed changes from my local git log:
Make serial and $mpi flavors co-installable

* Patch autotools configuration to add option --with-flavor which
  append _flavor-name to the libraries' names
* Configure $mpi builds with flavor-name=$mpi
* link $mpi flavor development libs to
  /usr/lib/$MULTIARCH/$mpi/libhdf5-legacy-names (so that existing
  makefiles still work using -L/usr/lib/$MULTIARCH/$mpi)
* install $mpi flavor include files into /usr/include/$mpi (so
  that existing makefiles still work using -I/usr/include/$mpi)
* Use alternatives to choose default h5p{cf}c
* Deactivate patch skip_cxx_inclusion.diff
* Remove related Conflicts / Provides from debian/control*

I've successfully tested the co-installation with all packages and the
build of an example using each flavor.

All this work was done against upstream release 1.8.13. I've had to bump
the soname to 8 because of the MPI-POSIX driver removal [1].

Of course this will require a transition.

Any comments before I upload to experimental?

Thanks in advance,

[1] http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

_g.



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Bug#749821: ncview: Conflicting declarations of function SciPlotSetXUserScale to cause undefined behaviour

2014-05-29 Thread Michael Tautschnig
Package: ncview
Version: 1.93g-1
Usertags: goto-cc

During a rebuild of all Debian packages in a clean sid chroot (using cowbuilder
and pbuilder) the build failed with the following error. Please note that we
use our research compiler tool-chain (using tools from the cbmc package), which
permits extended reporting on type inconsistencies at link time.

[...]
gcc  -DINC_PPM -o ncview ncview.o file.o util.o do_buttons.o file_netcdf.o  
view.o do_print.o epic_time.o interface/interface.o interface/x_interface.o 
interface/dataedit.o interface/display_info.o interface/plot_xy.o 
interface/utils.o interface/range.o interface/printer_options.o overlay.o 
interface/filesel.o interface/set_options.o interface/plot_range.o udu.o 
SciPlot.o interface/RadioWidget.o interface/cbar.o   -L.   \
   -lnetcdf  -lXaw -lXmu \
  -lnetpbm \
   -lSM -lICE -lXt -lXext -lX11  -lm


error: conflicting function declarations SciPlotSetXUserScale
old definition in module plot_xy file interface/../SciPlot.h line 150
void (struct _WidgetRec *, double, double)
new definition in module SciPlot file SciPlot.c line 3316
void (struct _WidgetRec *wi, float min, float max)

Makefile:118: recipe for target 'ncview' failed
make[1]: *** [ncview] Error 64
make[1]: Leaving directory 
'/srv/jenkins-slave/workspace/sid-goto-cc-ncview/ncview-1.93g'
debian/rules:34: recipe for target 'build-stamp' failed
make: *** [build-stamp] Error 2

As float and double will generally have a very different bit-level
representation, values passed to SciPlotSetXUserScale will end up heavily
garbled. The declaration in SciPlot.h should be fixed to use the same types as
the definition.

Best,
Michael



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