Your message dated Sun, 14 Jan 2018 16:50:06 +0000
with message-id <e1ealty-000a6s...@fasolo.debian.org>
and subject line Bug#855810: fixed in hdf5 1.10.1+repack-1~exp1
has caused the Debian Bug report #855810,
regarding libhdf5-openmpi-100 doesn't work on arm64
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
855810: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=855810
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libhdf5-openmpi-100
Version: 1.10.0-patch1+docs-3
Severity: important
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
The attached simple testcase fails on arm64 with:
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) MPI-process 0:
#000: ../../../src/H5F.c line 491 in H5Fcreate(): unable to create file
major: File accessibilty
minor: Unable to open file
#001: ../../../src/H5Fint.c line 1100 in H5F_open(): unable to open
file: time = Mon Feb 20 10:57:13 2017
, name = 'test.med', tent_flags = 13
major: File accessibilty
minor: Unable to open file
#002: ../../../src/H5FD.c line 812 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#003: ../../../src/H5FDmpio.c line 997 in H5FD_mpio_open():
MPI_File_open failed
major: Internal error (too specific to document in detail)
minor: Some MPI function failed
#004: ../../../src/H5FDmpio.c line 997 in H5FD_mpio_open():
MPI_ERR_OTHER: known error not in list
major: Internal error (too specific to document in detail)
minor: MPI Error String
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) MPI-process 0:
#000: ../../../src/H5F.c line 749 in H5Fclose(): not a file ID
major: Invalid arguments to routine
minor: Inappropriate type
To build it:
$ h5pcc.openmpi -o h5_mpitest h5_mpitest.c
To run it:
$ OMPI_MCA_orte_rsh_agent=/bin/false mpirun.openmpi -np 1 ./h5_mpitest
_g.
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#include <mpi.h>
#include <hdf5.h>
#define FILE "test.med"
int main(int argc, char *argv[]) {
hid_t file_id;
hid_t fapl;
int mpi_size, mpi_rank, ret=0;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
/* Create a new file using default properties. */
fapl = H5Pcreate (H5P_FILE_ACCESS);
H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL);
file_id = H5Fcreate(FILE,H5F_ACC_TRUNC, H5P_DEFAULT,fapl);
/* Close the file. */
H5Fclose(file_id);
H5Pclose(fapl);
MPI_Finalize();
return 0;
}
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.10.1+repack-1~exp1
We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 855...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gilles Filippini <p...@debian.org> (supplier of updated hdf5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 14 Jan 2018 16:54:08 +0100
Source: hdf5
Binary: libhdf5-101 libhdf5-cpp-101 libhdf5-dev libhdf5-openmpi-101
libhdf5-openmpi-dev libhdf5-mpich-101 libhdf5-mpich-dev libhdf5-mpi-dev
libhdf5-doc hdf5-helpers hdf5-tools libhdf5-serial-dev libhdf5-java libhdf5-jni
Architecture: source
Version: 1.10.1+repack-1~exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Changed-By: Gilles Filippini <p...@debian.org>
Description:
hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
libhdf5-101 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
libhdf5-cpp-101 - Hierarchical Data Format 5 (HDF5) - C++ libraries
libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
libhdf5-java - Hierarchical Data Format 5 (HDF5) - Java Wrapper Library
libhdf5-jni - native library used by libhdf5-java
libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
default M
libhdf5-mpich-101 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2
versio
libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH ver
libhdf5-openmpi-101 - Hierarchical Data Format 5 (HDF5) - runtime files -
OpenMPI versi
libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
OpenMPI v
libhdf5-serial-dev - transitional dummy package
Closes: 855810
Changes:
hdf5 (1.10.1+repack-1~exp1) experimental; urgency=medium
.
* Fix broken debian/watch due to upstrem web site major change; the
uscan download mode is now set to git
* Disable dh_auto_test on ppc64el (HDFFV-10309)
* This upstream release fixes openmpi flavor on arm64 (closes: #855810)
* Priority: replace 'extra' with 'optional'
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Files:
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hdf5_1.10.1+repack-1~exp1.dsc
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hdf5_1.10.1+repack.orig.tar.gz
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hdf5_1.10.1+repack-1~exp1.debian.tar.xz
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hdf5_1.10.1+repack-1~exp1_source.buildinfo
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--- End Message ---
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