Your message dated Wed, 26 Mar 2008 23:05:29 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#463393: fixed in hdf5 1.6.6-1
has caused the Debian Bug report #463393,
regarding hdf5: FTBFS: missing library libh5test-1.6.5.so.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [EMAIL PROTECTED]
immediately.)
--
463393: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=463393
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: hdf5
Version: 1.6.5-5
Severity: serious
Tags: patch
Greetings,
The binary h5perf in the hdf5-tools package requires the library
libh5test-1.6.5.so.0 which is not in any binary package. With
hdf5-tools installed, this results in:
# /usr/bin/h5perf
h5perf: error while loading shared libraries: libh5test-1.6.5.so.0:
cannot open shared object file: No such file or directory
Because of this, dh_shlibdeps is failing:
dh_shlibdeps -phdf5-tools -Llibhdf5-serial-1.6.5-0
-ldebian/libhdf5-serial-1.6.5-0/usr/lib
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/gif2h5 shouldn't be linked
with libpthread.so.0 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/gif2h5 shouldn't be linked
with libz.so.1 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/gif2h5 shouldn't be linked
with libm.so.6 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5dump shouldn't be linked
with libpthread.so.0 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5dump shouldn't be linked
with libz.so.1 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5dump shouldn't be linked
with libm.so.6 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h52gif shouldn't be linked
with libpthread.so.0 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h52gif shouldn't be linked
with libz.so.1 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h52gif shouldn't be linked
with libm.so.6 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5jam shouldn't be linked
with libpthread.so.0 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5jam shouldn't be linked
with libz.so.1 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5jam shouldn't be linked
with libm.so.6 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5import shouldn't be linked
with libpthread.so.0 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5import shouldn't be linked
with libz.so.1 (it uses none of its symbols).
dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5import shouldn't be linked
with libm.so.6 (it uses none of its symbols).
dpkg-shlibdeps: failure: couldn't find library libh5test-1.6.5.so.0 needed by
debian/hdf5-tools/usr/bin/h5perf (its RPATH is '').
Note: libraries are not searched in other binary packages that do not have any
shlibs or symbols file.
To help dpkg-shlibdeps find private libraries, you might need to set
LD_LIBRARY_PATH.
dh_shlibdeps: command returned error code 512
make: *** [binary-arch] Error 1
It seems dh_shlibdeps has become stricter, so this now causes FTBFS,
which is RC. :-(
Note the library is sitting right in the test directory. Aha, it
defines PUB_LIB= so PUB_LIB=$(LIB) is ignored. The attached patch fixes
this, and makes the install_shlib and install_devlib files more general
so it gets installed in the package.
Now the package builds, and the result is:
# /usr/bin/h5perf
No parallel IO performance because parallel is not configured
Cheers,
-Adam
--
GPG fingerprint: D54D 1AEE B11C CE9B A02B C5DD 526F 01E8 564E E4B6
Engineering consulting with open source tools
http://www.opennovation.com/
--- hdf5-1.6.5/test/Makefile.in~ 2005-07-21 14:49:03.000000000 +0000
+++ hdf5-1.6.5/test/Makefile.in 2008-01-30 23:01:19.000000000 +0000
@@ -39,7 +39,6 @@
LIB=libh5test.la
LIB_SRC=h5test.c testframe.c
LIB_OBJ=$(LIB_SRC:.c=.lo)
-PUB_LIB=
## Temporary files. These files are the ones created by setting the
## HDF5_NOCLEANUP environment variable and running `make test' without
--- hdf5-1.6.5/debian/install_shlib~ 2008-01-30 23:58:30.000000000 +0000
+++ hdf5-1.6.5/debian/install_shlib 2008-01-30 23:59:03.000000000 +0000
@@ -1 +1 @@
-usr/lib/libhdf5*.so.*
+usr/lib/libh*.so.*
--- hdf5-1.6.5/debian/install_devlib~ 2008-01-30 23:58:30.000000000 +0000
+++ hdf5-1.6.5/debian/install_devlib 2008-01-30 23:59:54.000000000 +0000
@@ -1,5 +1,5 @@
usr/include
-usr/lib/libhdf5*.so
-usr/lib/libhdf5*.settings
-usr/lib/libhdf5*.la
-usr/lib/libhdf5*.a
+usr/lib/libh*.so
+usr/lib/libh*.settings
+usr/lib/libh*.la
+usr/lib/libh*.a
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.6.6-1
We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive:
hdf5-tools_1.6.6-1_i386.deb
to pool/main/h/hdf5/hdf5-tools_1.6.6-1_i386.deb
hdf5_1.6.6-1.diff.gz
to pool/main/h/hdf5/hdf5_1.6.6-1.diff.gz
hdf5_1.6.6-1.dsc
to pool/main/h/hdf5/hdf5_1.6.6-1.dsc
hdf5_1.6.6.orig.tar.gz
to pool/main/h/hdf5/hdf5_1.6.6.orig.tar.gz
libhdf5-doc_1.6.6-1_all.deb
to pool/main/h/hdf5/libhdf5-doc_1.6.6-1_all.deb
libhdf5-lam-1.6.6-0_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-lam-1.6.6-0_1.6.6-1_i386.deb
libhdf5-lam-dev_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-lam-dev_1.6.6-1_i386.deb
libhdf5-mpich-1.6.6-0_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-mpich-1.6.6-0_1.6.6-1_i386.deb
libhdf5-mpich-dev_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-mpich-dev_1.6.6-1_i386.deb
libhdf5-openmpi-1.6.6-0_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-openmpi-1.6.6-0_1.6.6-1_i386.deb
libhdf5-openmpi-dev_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-openmpi-dev_1.6.6-1_i386.deb
libhdf5-serial-1.6.6-0_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-serial-1.6.6-0_1.6.6-1_i386.deb
libhdf5-serial-dev_1.6.6-1_i386.deb
to pool/main/h/hdf5/libhdf5-serial-dev_1.6.6-1_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Francesco Paolo Lovergine <[EMAIL PROTECTED]> (supplier of updated hdf5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Wed, 02 Jan 2008 16:38:38 +0100
Source: hdf5
Binary: libhdf5-serial-1.6.6-0 libhdf5-serial-dev libhdf5-lam-1.6.6-0
libhdf5-lam-dev libhdf5-openmpi-1.6.6-0 libhdf5-openmpi-dev
libhdf5-mpich-1.6.6-0 libhdf5-mpich-dev libhdf5-doc hdf5-tools
Architecture: source all i386
Version: 1.6.6-1
Distribution: unstable
Urgency: low
Maintainer: Francesco Paolo Lovergine <[EMAIL PROTECTED]>
Changed-By: Francesco Paolo Lovergine <[EMAIL PROTECTED]>
Description:
hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
libhdf5-lam-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files - LAM
version
libhdf5-lam-dev - Hierarchical Data Format 5 (HDF5) - development files - LAM
versi
libhdf5-mpich-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files -
MPICH version
libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH ver
libhdf5-openmpi-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files -
OpenMPI versi
libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
OpenMPI v
libhdf5-serial-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files -
serial versio
libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files -
serial ve
Closes: 449723 456862 457080 463393 466739
Changes:
hdf5 (1.6.6-1) unstable; urgency=low
.
[ Francesco Paolo Lovergine ]
* New upstream release. All Debian source changes already merged.
* Manually run "autoupdate; libtoolize --force --copy; aclocal; autoheader;
autoconf" in the base directory, and "autoupdate; libtoolize --force
--copy; aclocal; autoconf" in the c++/ directory.
* Added Homepage field in debian/control.in
* Watch file updated.
(closes: #449723)
* Fixed rpath issue with dh_shlibdeps due to missing library path. Thanks
both
Adam C Powell IV and Riku Voipio for NMU.
(closes: #463393,#456862,#466739)
* [Lintian] Policy bumped to 3.7.3
* [Lintian] Now using ${binary:Version} in debian/control.in
* Added Vcs-* fields to debian/control.in
.
[ Adam C Powell IV ]
* Added OpenMPI version (closes: #457080)
* Patch to H5public.h for OpenMPI is for C++ programs which include
hdf5.h in an extern "C" block. Patch included for reference and installed
on fly.
Files:
64e4895eab3e120e9df3b025c935747d 1099 science optional hdf5_1.6.6-1.dsc
6c7fcc91f1579555d88bb10c6c9a33a9 5299558 science optional
hdf5_1.6.6.orig.tar.gz
c8bba0ff85e6b36cebb6367bc3c17288 519310 science optional hdf5_1.6.6-1.diff.gz
e835adad80b83d6404ff6ad7f7837433 2021756 doc optional
libhdf5-doc_1.6.6-1_all.deb
36c0def6446f70f865a843fc916c7b5b 629300 libs optional
libhdf5-serial-1.6.6-0_1.6.6-1_i386.deb
3ae424fe76c9018bb156d9a208cb380d 749660 libdevel optional
libhdf5-serial-dev_1.6.6-1_i386.deb
ce9efaf7d23e2794b3731ef3ef1eb4cf 527800 libs extra
libhdf5-lam-1.6.6-0_1.6.6-1_i386.deb
ab848a34c830b0d5ed9e4f4eefef3112 620464 libdevel extra
libhdf5-lam-dev_1.6.6-1_i386.deb
053030a4c84b2d2ec5b480e7cfe680f6 528032 libs extra
libhdf5-openmpi-1.6.6-0_1.6.6-1_i386.deb
79d765a25f64964adc51e6f633c5b975 620750 libdevel extra
libhdf5-openmpi-dev_1.6.6-1_i386.deb
a20d0fed33fb5aebe5b085cc16874ae7 706630 libs extra
libhdf5-mpich-1.6.6-0_1.6.6-1_i386.deb
17b77507fcafac88f2544e3637dd5175 620310 libdevel extra
libhdf5-mpich-dev_1.6.6-1_i386.deb
f55f9019de91214cbcd2b9ad354b6901 245098 science optional
hdf5-tools_1.6.6-1_i386.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.6 (GNU/Linux)
iD8DBQFH4NwHpFNRmenyx0cRAtOJAKDi8KMNEhd+Ak+gTjoXFNVVBA5IxgCfQ3yb
BuWfreU8JvdlbE3TzuqkTdw=
=kXc6
-----END PGP SIGNATURE-----
--- End Message ---
_______________________________________________
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/mailman/listinfo/pkg-grass-devel
