Your message dated Fri, 29 Jan 2010 12:50:43 +0000 with message-id <e1naqj9-0006oy...@ries.debian.org> and subject line Bug#567256: fixed in hdf5 1.8.4-4 has caused the Debian Bug report #567256, regarding FTBS on sparc, mipsel and mips to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 567256: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=567256 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: hdf5 Version: 1.8.4-3 Severity: important Justification: fails to build from source Building results in a bus error. I'm not sure if this is a problem with H5detect at building time or the result of a compiler issue on this platforms (little endian?). Note the problem in optimization... ../../../src/H5detect.c: In function 'main': ../../../src/H5detect.c:869: warning: cannot optimize possibly infinite loops ../../../src/H5detect.c:860: warning: cannot optimize possibly infinite loops mv -f .deps/H5detect-H5detect.Tpo .deps/H5detect-H5detect.Po /bin/bash ../libtool --tag=CC --mode=link gcc -g -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wstrict-overflow -Wlogical-op -Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -O0 -fomit-frame-pointer -finline-functions -g -O2 -o H5detect H5detect-H5detect.o -lpthread -lz -lm libtool: link: gcc -g -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wstrict-overflow -Wlogical-op -Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -O0 -fomit-frame-pointer -finline-functions -g -O2 -o H5detect H5detect-H5detect.o -lpthread -lz -lm LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect > H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) /bin/bash: line 4: 22983 Bus error LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | sed -e 's/-L/:/g' -e 's/ //g'`" ./H5detect > H5Tinit.c make[3]: *** [H5Tinit.c] Error 1 -- System Information: Debian Release: squeeze/sid APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 2.6.32-trunk-686 (SMP w/1 CPU core) Locale: LANG=it_IT.UTF-8, LC_CTYPE=it_IT.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash
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--- Begin Message ---Source: hdf5 Source-Version: 1.8.4-4 We believe that the bug you reported is fixed in the latest version of hdf5, which is due to be installed in the Debian FTP archive: hdf5-tools_1.8.4-4_i386.deb to main/h/hdf5/hdf5-tools_1.8.4-4_i386.deb hdf5_1.8.4-4.diff.gz to main/h/hdf5/hdf5_1.8.4-4.diff.gz hdf5_1.8.4-4.dsc to main/h/hdf5/hdf5_1.8.4-4.dsc libhdf5-doc_1.8.4-4_all.deb to main/h/hdf5/libhdf5-doc_1.8.4-4_all.deb libhdf5-lam-1.8.4_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-lam-1.8.4_1.8.4-4_i386.deb libhdf5-lam-dev_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-lam-dev_1.8.4-4_i386.deb libhdf5-mpich-1.8.4_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-mpich-1.8.4_1.8.4-4_i386.deb libhdf5-mpich-dev_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-mpich-dev_1.8.4-4_i386.deb libhdf5-openmpi-1.8.4_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-openmpi-1.8.4_1.8.4-4_i386.deb libhdf5-openmpi-dev_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-openmpi-dev_1.8.4-4_i386.deb libhdf5-serial-1.8.4_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-serial-1.8.4_1.8.4-4_i386.deb libhdf5-serial-dev_1.8.4-4_i386.deb to main/h/hdf5/libhdf5-serial-dev_1.8.4-4_i386.deb A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 567...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Francesco Paolo Lovergine <fran...@debian.org> (supplier of updated hdf5 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Fri, 29 Jan 2010 12:27:12 +0100 Source: hdf5 Binary: libhdf5-serial-1.8.4 libhdf5-serial-dev libhdf5-lam-1.8.4 libhdf5-lam-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libhdf5-mpich-1.8.4 libhdf5-mpich-dev libhdf5-doc hdf5-tools Architecture: source all i386 Version: 1.8.4-4 Distribution: unstable Urgency: low Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org> Changed-By: Francesco Paolo Lovergine <fran...@debian.org> Description: hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-lam-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files - LAM version libhdf5-lam-dev - Hierarchical Data Format 5 (HDF5) - development files - LAM versi libhdf5-mpich-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH version libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH ver libhdf5-openmpi-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI versi libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI v libhdf5-serial-1.8.4 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve Closes: 553979 567256 Changes: hdf5 (1.8.4-4) unstable; urgency=low . * New patch sigbus.diff to revert changes done in 1.8.4 for SIGBUS/SIGSEGV handlers which cause sigbus error on space, mips and mipsel in H5detect. (closes: #567256) * SuperH saga ends hopefully with a final patch to debian/rules. Thanks Nobuhiro Iwamatsu. (closes: #553979) Checksums-Sha1: 4031ef552e6c45b5396139f85e76bf8fd8f025a2 1683 hdf5_1.8.4-4.dsc ec07bd316c07c71dbda27d843b25be009003ce5c 12773076 hdf5_1.8.4-4.diff.gz eed0a79d2dcb34ee7fdf239d7474dda0def7e2f7 11923574 libhdf5-doc_1.8.4-4_all.deb 64571f9a56318937dc0f77e86f562c05047eedcc 1246086 libhdf5-serial-1.8.4_1.8.4-4_i386.deb 1261d25c63348fb31abb4ade62db862c9e9c511f 2135612 libhdf5-serial-dev_1.8.4-4_i386.deb 82093a48139868c76d28cc9f15bd8dd775291127 1053436 libhdf5-lam-1.8.4_1.8.4-4_i386.deb 64afed05a3f1370285a8f8d54bf264173d83b4cc 1346008 libhdf5-lam-dev_1.8.4-4_i386.deb fc695ac2c625f5a47c04d3d66e6ecddd2fda5ff3 1137276 libhdf5-openmpi-1.8.4_1.8.4-4_i386.deb 794b05018018f3bc9a52f85d662a9eafe58dfe2c 2021180 libhdf5-openmpi-dev_1.8.4-4_i386.deb 1b2603ae2293d3bfb3328cab24133845c2222c5d 1338512 libhdf5-mpich-1.8.4_1.8.4-4_i386.deb 2feced7b515234841dbc72c13e67ff5de646c954 2020436 libhdf5-mpich-dev_1.8.4-4_i386.deb b3aa0cf8f76135592501a43266e254577b1d98ad 495394 hdf5-tools_1.8.4-4_i386.deb Checksums-Sha256: 147f820409eee81dc031e7d152cbe2fa6aabf74891cb3bcf88ad9b35ba24c9e0 1683 hdf5_1.8.4-4.dsc c0e902a83c1e2ea4cf6e9ba7a852855f314f1c468b687af68614b9bd71eb9ed7 12773076 hdf5_1.8.4-4.diff.gz 0562c5e703ea2dc1048687442874e16a025fe139eb74565005fc6cd79b32a60a 11923574 libhdf5-doc_1.8.4-4_all.deb 6b7dd8e39862081f0c854a4883ce26fdd4fed6506cde758a02ee1d5dce3efd7b 1246086 libhdf5-serial-1.8.4_1.8.4-4_i386.deb f9220bdebacc7ce64400d5092fe3956c3837c84221b026d9f6ce535357fc3f36 2135612 libhdf5-serial-dev_1.8.4-4_i386.deb c20bebc5b4a12de27424774e710253f924711dbc6811de229c151aaefb9b09b5 1053436 libhdf5-lam-1.8.4_1.8.4-4_i386.deb 26e71788b27287f5c03d3cf096f48c0f3f1c95cef135e6503e37ca44a36e9190 1346008 libhdf5-lam-dev_1.8.4-4_i386.deb 70a1ea6594481ba969c6db5a24c0f349cafdf0af1582986446f1c22907f7c412 1137276 libhdf5-openmpi-1.8.4_1.8.4-4_i386.deb d3e8baa55536403f0430ad73e7bd6cfb9dd08601e4d78e711dbbbb39b59e796f 2021180 libhdf5-openmpi-dev_1.8.4-4_i386.deb bdee853ab4cd75184eea3f2286d5a96ffad523892c71d83ffe872dcea6bfafe6 1338512 libhdf5-mpich-1.8.4_1.8.4-4_i386.deb abdcc2fde33d9321ebf3323c4739e4825f7667b8c7f186478b90258b06a86494 2020436 libhdf5-mpich-dev_1.8.4-4_i386.deb 181c2fc040e1d6d04f20bbc67787077ca547d48c2d01006507c293f3db24c75e 495394 hdf5-tools_1.8.4-4_i386.deb Files: 0a354ded9635a9ed7d72c8e20c55f6ff 1683 science optional hdf5_1.8.4-4.dsc 1c9f4023948efa0ba4a1a216f5776600 12773076 science optional hdf5_1.8.4-4.diff.gz 55da72d867eeb981e0daf5ffe5664065 11923574 doc optional libhdf5-doc_1.8.4-4_all.deb 2f6c14450912aaa35373f94797b45348 1246086 libs optional libhdf5-serial-1.8.4_1.8.4-4_i386.deb 3134d10135f2bcb3bcd7939757a4f8b3 2135612 libdevel optional libhdf5-serial-dev_1.8.4-4_i386.deb 1d76d87b854a7456906f395ae729d05f 1053436 libs extra libhdf5-lam-1.8.4_1.8.4-4_i386.deb effbac51543035286d085fa05973bfb7 1346008 libdevel extra libhdf5-lam-dev_1.8.4-4_i386.deb 8f758e10df2f0e35a643afc0ef72aa51 1137276 libs extra libhdf5-openmpi-1.8.4_1.8.4-4_i386.deb dcd4987d08ccad323ac87ffa72801766 2021180 libdevel extra libhdf5-openmpi-dev_1.8.4-4_i386.deb 17a55a4f83f1e9d18ef2bac8c9b8dd3b 1338512 libs extra libhdf5-mpich-1.8.4_1.8.4-4_i386.deb c12bc2e87da9fd70f3bfac2d13c7dbd0 2020436 libdevel extra libhdf5-mpich-dev_1.8.4-4_i386.deb d48d4cb12e61713a7bcd86907dc6fef6 495394 science optional hdf5-tools_1.8.4-4_i386.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) iEYEARECAAYFAkti0rQACgkQpFNRmenyx0ciGACfZ4J36o7bVyiW2JX22t3uNcYL yZ4AoI9HedDcwcsyn3NQbDT23towwHlQ =Lyk9 -----END PGP SIGNATURE-----
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