[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit ba712c154af021529f70d1afd57ee4659736c0fd
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Wed Apr 2 10:22:22 2008 +

Control rebuilt

diff --git a/debian/control b/debian/control
index 0a79b32..ccf4052 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), 
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5)
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5)
 Standards-Version: 3.7.3
 Homepage: http://hdf.ncsa.uiuc.edu/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 47c6731fa6cd5a3b55cd7212c5572eed47b64fd9
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Wed Apr 2 10:22:02 2008 +

versioning for sed

diff --git a/debian/control.in b/debian/control.in
index 1f5bce9..e8dc8af 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), 
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5)
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5)
 Standards-Version: 3.7.3
 Homepage: http://hdf.ncsa.uiuc.edu/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit f03654b035c49b94b7fd896f63bcb903191ea171
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Wed Apr 9 12:39:08 2008 +

Fixed homepage field

diff --git a/debian/changelog b/debian/changelog
index 51c8357..7c5498e 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -6,8 +6,10 @@ hdf5 (1.6.7-1) unstable; urgency=low
   * Manually run autoupdate; libtoolize --force --copy; aclocal; autoheader;
 autoconf in the base directory, and autoupdate; libtoolize --force
 --copy; aclocal; autoconf in the c++/ directory.
+  * [LINTIAN] Changed a bit versions used in build-dep to avoid possible 
breakages. 
+  * Homepage field updated in debian/control.in
 
- -- Francesco Paolo Lovergine fran...@debian.org  Wed, 09 Apr 2008 13:49:53 
+0200
+ -- Francesco Paolo Lovergine fran...@debian.org  Wed, 09 Apr 2008 14:23:29 
+0200
 
 hdf5 (1.6.6-4) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index 1108d64..95120dc 100644
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,7 @@ Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), 
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5)
 Standards-Version: 3.7.3
-Homepage: http://hdf.ncsa.uiuc.edu/HDF5/
+Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
 Vcs-Svn: svn://svn.debian.org/svn/pkg-grass/packages/hdf5/trunk
 
diff --git a/debian/control.in b/debian/control.in
index e8dc8af..42794d7 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -6,7 +6,7 @@ Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), 
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5)
 Standards-Version: 3.7.3
-Homepage: http://hdf.ncsa.uiuc.edu/HDF5/
+Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
 Vcs-Svn: svn://svn.debian.org/svn/pkg-grass/packages/hdf5/trunk
 

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit ad75109b853651673d2b08a6893f0929dfeb624b
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Sat May 10 09:24:25 2008 +

Added build-dep

diff --git a/debian/control b/debian/control
index 95120dc..3f857ab 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), 
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5)
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5), gfortran
 Standards-Version: 3.7.3
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
diff --git a/debian/control.in b/debian/control.in
index 42794d7..c0c9c16 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), 
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5)
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 5), sed (=4.1.5), gfortran
 Standards-Version: 3.7.3
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit c54361ff38992d804c9dd9db43160c42ff87f9cb
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Wed Apr 9 13:11:31 2008 +

Major changes

diff --git a/debian/changelog b/debian/changelog
index 7c5498e..16e322c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -7,9 +7,12 @@ hdf5 (1.6.7-1) unstable; urgency=low
 autoconf in the base directory, and autoupdate; libtoolize --force
 --copy; aclocal; autoconf in the c++/ directory.
   * [LINTIAN] Changed a bit versions used in build-dep to avoid possible 
breakages. 
-  * Homepage field updated in debian/control.in
+  * Homepage field updated in debian/control.in.
+  * Updated and normalized debian/copyright.
+  * Now enabled Fortran (openmpi and mpich only) and C++ (serial only) binding.
+(closes: #470159)
 
- -- Francesco Paolo Lovergine fran...@debian.org  Wed, 09 Apr 2008 14:23:29 
+0200
+ -- Francesco Paolo Lovergine fran...@debian.org  Wed, 09 Apr 2008 15:06:58 
+0200
 
 hdf5 (1.6.6-4) unstable; urgency=low
 
diff --git a/debian/copyright b/debian/copyright
index f1ba45d..cfe7556 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,82 +1,88 @@
 This package was debianized by Brian Russo wol...@debian.org on
-Mon, 22 Jan 2001 22:09:19 -1000.
+Mon, 22 Jan 2001 22:09:19 -1000. 
 
-It was downloaded from
-http://hdf.ncsa.uiuc.edu/
+Currently maintained by Francesco P. Lovergine fran...@debian.org
+in behalf of the DebianGis Team.
+
+It was downloaded from http://hdfgroup.org/
+
+Upstream authors: The HDF Group (THG) 
 
 Copyright:
 
-Copyright Notice and Statement for NCSA Hierarchical Data Format (HDF)
-Software Library and Utilities
+HDF5 (Hierarchical Data Format 5) Software Library and Utilities
+Copyright 2006-2008 by The HDF Group (THG).
+
+NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
+Copyright 1998-2006 by the Board of Trustees of the University of Illinois.
 
-NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities 
-Copyright 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005 by the Board of 
-Trustees of the University of Illinois.  All rights reserved.
+All rights reserved.
 
-Contributors: National Center for Supercomputing Applications (NCSA) at the
-University of Illinois at Urbana-Champaign (UIUC), Lawrence Livermore 
-National Laboratory (LLNL), Sandia National Laboratories (SNL), Los Alamos 
-National Laboratory (LANL), Jean-loup Gailly and Mark Adler (gzip library).
+Contributors:   National Center for Supercomputing Applications  (NCSA) at 
+the University of Illinois, Fortner Software, Unidata Program Center (netCDF), 
+The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler (gzip), 
+and Digital Equipment Corporation (DEC).
 
-Redistribution and use in source and binary forms, with or without
-modification, are permitted for any purpose (including commercial purposes)
+Redistribution and use in source and binary forms, with or without 
+modification, are permitted for any purpose (including commercial purposes) 
 provided that the following conditions are met:
 
-1.  Redistributions of source code must retain the above copyright notice,
-this list of conditions, and the following disclaimer.
+1. Redistributions of source code must retain the above copyright notice, 
+   this list of conditions, and the following disclaimer.
 
-2.  Redistributions in binary form must reproduce the above copyright notice,
-this list of conditions, and the following disclaimer in the documentation
-and/or materials provided with the distribution.
+2. Redistributions in binary form must reproduce the above copyright notice, 
+   this list of conditions, and the following disclaimer in the documentation 
+   and/or materials provided with the distribution.
 
-3.  In addition, redistributions of modified forms of the source or binary
-code must carry prominent notices stating that the original code was
-changed and the date of the change.
+3. In addition, redistributions of modified forms of the source or binary 
+   code must carry prominent notices stating that the original code was 
+   changed and the date of the change.
 
-4.  All publications or advertising materials mentioning features or use of
-this software are asked, but not required, to acknowledge that it was 
-developed by the National Center for Supercomputing Applications at the 
-University of Illinois at Urbana-Champaign and to credit the contributors.
+4. All publications or advertising materials mentioning features or use of 
+   this software are asked, but not required, to acknowledge that it was 
+   developed by The HDF Group and by the National Center for Supercomputing 
+   Applications at the University of Illinois at Urbana-Champaign and 
+   credit the contributors.
 
-5.  Neither the name of the University nor the names of the Contributors may
-be used to endorse or promote products derived from 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 5bd540657d2a536527ee240db9cddf6a3750534a
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Thu Oct 9 13:46:18 2008 +

Long due changes

diff --git a/debian/changelog b/debian/changelog
index 16e322c..99142bd 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-hdf5 (1.6.7-1) unstable; urgency=low
+hdf5 (1.6.7-1) UNRELEASED; urgency=low
 
   * New upstream release. This is a bug fix release, but for removing of the
 virtual stream I/O library, which is now stripped out of the main library.
@@ -8,11 +8,19 @@ hdf5 (1.6.7-1) unstable; urgency=low
 --copy; aclocal; autoconf in the c++/ directory.
   * [LINTIAN] Changed a bit versions used in build-dep to avoid possible 
breakages. 
   * Homepage field updated in debian/control.in.
+(closes: #501564)
   * Updated and normalized debian/copyright.
   * Now enabled Fortran (openmpi and mpich only) and C++ (serial only) binding.
 (closes: #470159)
-
- -- Francesco Paolo Lovergine fran...@debian.org  Wed, 09 Apr 2008 15:06:58 
+0200
+  * Dropped -0 suffix in all run-time libraries packages.
+  * Changed SONAMEs and solib names as consequence. Dependencies will require
+rebuilding in order to use the new libraries. Now SONAMEs uses an
+ordinary serialization which depends on the upstream versions.
+Incidentally the new SONAMEs and library names do not conflict with 
+the old ones.
+  * Now using quilt to manage patches.
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Thu, 09 Oct 2008 15:44:25 
+0200
 
 hdf5 (1.6.6-4) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index 3f857ab..f0f4a39 100644
--- a/debian/control
+++ b/debian/control
@@ -10,12 +10,12 @@ Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
 Vcs-Svn: svn://svn.debian.org/svn/pkg-grass/packages/hdf5/trunk
 
-Package: libhdf5-serial-1.6.7-0
+Package: libhdf5-serial-1.6.7
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.6.7-0
-Provides: libhdf5-1.6.7-0
+Conflicts: libhdf5-1.6.7
+Provides: libhdf5-1.6.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -27,7 +27,7 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
 Package: libhdf5-serial-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-1.6.7-0 (= ${binary:Version}), libc6-dev, zlib1g-dev, 
libjpeg62-dev
+Depends: libhdf5-serial-1.6.7 (= ${binary:Version}), zlib1g-dev, libjpeg62-dev
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -39,13 +39,13 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - serial vers
  .
  This package contains development files for serial platforms.
 
-Package: libhdf5-lam-1.6.7-0
+Package: libhdf5-lam-1.6.7
 Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.6.7-0
-Provides: libhdf5-1.6.7-0
+Conflicts: libhdf5-1.6.7
+Provides: libhdf5-1.6.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - LAM version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -58,7 +58,7 @@ Package: libhdf5-lam-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-lam-1.6.7-0 (= ${binary:Version}), libc6-dev, zlib1g-dev, 
libjpeg62-dev, lam4-dev
+Depends: libhdf5-lam-1.6.7 (= ${binary:Version}), zlib1g-dev, libjpeg62-dev, 
lam4-dev
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -70,13 +70,13 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - LAM version
  .
  This package contains development files for use with LAM.
 
-Package: libhdf5-openmpi-1.6.7-0
+Package: libhdf5-openmpi-1.6.7
 Section: libs
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.6.7-0
-Provides: libhdf5-1.6.7-0
+Conflicts: libhdf5-1.6.7
+Provides: libhdf5-1.6.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -89,7 +89,7 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
-Depends: libhdf5-openmpi-1.6.7-0 (= ${binary:Version}), libc6-dev, zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev
+Depends: libhdf5-openmpi-1.6.7 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -101,13 +101,13 @@ Description: Hierarchical Data Format 5 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit abc1d7bde71337fea85a12f43c73e695ffe706c0
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Mon Jun 22 10:29:59 2009 +

Preparing for tagging.

diff --git a/debian/changelog b/debian/changelog
index 010e2b3..890b3d6 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,5 @@
 hdf5 (1.8.3-1) experimental; urgency=low
 
-  * NOT YET RELEASED.
   * New upstream release.
   * Added a patch debian/patches/autotools to update autotools and remove
 limitation in using thread-safety along with C++/Fortran bindings.

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit e78466dde191719340e4341644b750fbe655b48d
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Aug 7 15:32:18 2009 +

diff --git a/debian/changelog b/debian/changelog
index 890b3d6..661c8cb 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,17 @@
+hdf5 (1.8.3-2) unstable; urgency=low
+
+  * Uploaded to unstable.
+(closes: #519575, #501564, #470159)
+  * Fixed shlibs.in to avoid wrong interdependencies.
+(closes: #537413)
+  * Added libjpeg-dev as an alternative build-dep and replaced
+into the -dev package list of deps.
+  * [PATCH] mpi.diff added to remove mpio.h including, which
+is supefluous for LAM, MPICH and OpenMPI AFAIK.
+(closes: #515579)
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Thu, 06 Aug 2009 16:40:50 
+0200
+
 hdf5 (1.8.3-1) experimental; urgency=low
 
   * New upstream release.
diff --git a/debian/control b/debian/control
index 84c7603..ee4b50b 100644
--- a/debian/control
+++ b/debian/control
@@ -4,8 +4,8 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 7), sed (=4.1.5), gfortran,
- libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390]
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev | 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390]
 Standards-Version: 3.8.1
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
@@ -28,7 +28,7 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
 Package: libhdf5-serial-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-1.8.3 (= ${binary:Version}), zlib1g-dev, libjpeg62-dev
+Depends: libhdf5-serial-1.8.3 (= ${binary:Version}), zlib1g-dev, libjpeg-dev
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
diff --git a/debian/control.in b/debian/control.in
index b845f65..0b7e809 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -4,8 +4,8 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev, 
debhelper ( 7), sed (=4.1.5), gfortran,
- libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390]
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390], libjpeg62-dev | 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390]
 Standards-Version: 3.8.1
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
@@ -28,7 +28,7 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
 Package: libhdf5-serial-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-@VERSION@ (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev
+Depends: libhdf5-serial-@VERSION@ (= ${binary:Version}), zlib1g-dev, 
libjpeg-dev
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
diff --git a/debian/patches/mpi.diff b/debian/patches/mpi.diff
new file mode 100644
index 000..9706d22
--- /dev/null
+++ b/debian/patches/mpi.diff
@@ -0,0 +1,14 @@
+Index: hdf5-1.8.3/src/H5public.h
+===
+--- hdf5-1.8.3.orig/src/H5public.h 2009-08-06 16:37:19.0 +0200
 hdf5-1.8.3/src/H5public.h  2009-08-06 16:37:51.0 +0200
+@@ -55,9 +55,6 @@
+ #endif
+ #ifdef H5_HAVE_PARALLEL
+ #   include mpi.h
+-#ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already   */
+-#   include mpio.h
+-#endif
+ #endif
+ 
+ 
diff --git a/debian/patches/series b/debian/patches/series
index 6ebafaf..8902f5f 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
 autotools.diff -p1
+mpi.diff
diff --git a/debian/rules b/debian/rules
index 89a2a71..848f93a 100755
--- a/debian/rules
+++ b/debian/rules
@@ -249,14 +249,14 @@ binary-arch: build install-serial install-lam 
$(install_openmpi) install-mpich
dh_strip $(ARCH_FLAG)
dh_compress $(ARCH_FLAG)
dh_fixperms $(ARCH_FLAG)
-#  dh_makeshlibs -p$(serpack) -V $(serpack) | $(virtpack)
+   dh_makeshlibs -p$(serpack) -V $(serpack) | $(virtpack)
dh_makeshlibs -p$(lampack) -V $(lampack)
 ifeq ($(build_openmpi),yes)
dh_makeshlibs -p$(openmpipack) -V $(openmpipack)
 endif
dh_makeshlibs -p$(mpichpack) -V $(mpichpack)
dh_installdeb $(ARCH_FLAG)
-   dh_shlibdeps -phdf5-tools -L$(serpack) 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 0372aba00e9c24466af2bba649889d9cce93b6c7
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Aug 7 15:33:51 2009 +

True fixes for shlibs.in

diff --git a/debian/rules b/debian/rules
index 848f93a..fa575e2 100755
--- a/debian/rules
+++ b/debian/rules
@@ -111,7 +111,7 @@ configure-stamp-debian: patch debian/control.in
ln -sf $$i $(mpichpack).$$j ; \
done
sed s/@VERSION@/$(version)/g debian/shlibs.in  
debian/$(serpack).shlibs
-   touch configure-stamp-debian
+   touch $@
 
 configure-stamp-serial: configure-stamp-debian
dh_testdir
@@ -119,7 +119,7 @@ configure-stamp-serial: configure-stamp-debian
 # configure serial version
cd debian/build-serial  CC=$(DEBCC) CXX=$(DEBCXX) F9X=$(DEBFORTRAN) \
../../configure $(CONFIGURE_FLAGS) $(SERIAL_ONLY_FLAGS) 
-   touch configure-stamp-serial
+   touch $@
 
 configure-stamp-lam: configure-stamp-debian
dh_testdir
@@ -129,7 +129,7 @@ configure-stamp-lam: configure-stamp-debian
CC=mpicc.lam RUNPARALLEL=/usr/bin/mpirun.lam \
../../configure $(CONFIGURE_FLAGS) \
--enable-parallel=yes
-   touch configure-stamp-lam
+   touch $@
 
 configure-stamp-openmpi: configure-stamp-debian
dh_testdir
@@ -139,7 +139,7 @@ configure-stamp-openmpi: configure-stamp-debian
CC=mpicc.openmpi F9X=mpif90.openmpi 
RUNPARALLEL=/usr/bin/mpirun.openmpi \
OMPI_MCA_disable_memory_allocator=1 ../../configure 
$(CONFIGURE_FLAGS) --enable-fortran \
--enable-parallel=yes
-   touch configure-stamp-openmpi
+   touch $@
 
 configure-stamp-mpich: configure-stamp-debian
dh_testdir
@@ -150,32 +150,32 @@ configure-stamp-mpich: configure-stamp-debian
CXX=mpiCC.mpich F9X=mpif90.mpich 
RUNPARALLEL=/usr/bin/mpirun.mpich \
../../configure $(CONFIGURE_FLAGS) --enable-fortran \
--enable-parallel=yes
-   touch configure-stamp-mpich
+   touch $@
 
 prep: 
dh_prep
 
-build: prep build-stamp-serial build-stamp-lam $(build_stamp_openmpi) 
build-stamp-mpich
+build: build-stamp-serial build-stamp-lam $(build_stamp_openmpi) 
build-stamp-mpich
 
 build-stamp-serial: configure-stamp-serial
dh_testdir
$(MAKE) -C debian/build-serial/
-   touch build-stamp-serial
+   touch $@
 
 build-stamp-lam: configure-stamp-lam 
dh_testdir
$(MAKE) -C debian/build-lam/
-   touch build-stamp-lam
+   touch $@
 
 build-stamp-openmpi: configure-stamp-openmpi 
dh_testdir
$(MAKE)  -C debian/build-openmpi/ OMPI_MCA_disable_memory_allocator=1
-   touch build-stamp-openmpi
+   touch $@
 
 build-stamp-mpich: configure-stamp-mpich 
dh_testdir
$(MAKE) -C debian/build-mpich/
-   touch build-stamp-mpich
+   touch $@
 
 clean: unpatch
test -f debian/control.in
@@ -188,9 +188,9 @@ clean: unpatch
grep -v ^\% debian/control.in | sed -e s/@VERSION@/$(version)/g -e 
s/@ARCHS@/$(ARCHS)/  debian/control
dh_clean configure-stamp* build-stamp* install-stamp* debian/*.shlibs
 
-install: install-serial install-lam $(install_openmpi) install-mpich 
install-doc
+install: build prep install-serial install-lam $(install_openmpi) 
install-mpich install-doc
 
-install-serial: build-stamp-serial
+install-serial: build-stamp-serial 
dh_testdir
dh_testroot
-mkdir debian/build-serial/tmpinst
@@ -239,7 +239,7 @@ binary-indep: install-doc
dh_md5sums -i
dh_builddeb -i
 
-binary-arch: build install-serial install-lam $(install_openmpi) install-mpich
+binary-arch: prep install-serial install-lam $(install_openmpi) install-mpich
dh_testdir
dh_testroot 
dh_installdocs $(ARCH_FLAG)
@@ -249,15 +249,15 @@ binary-arch: build install-serial install-lam 
$(install_openmpi) install-mpich
dh_strip $(ARCH_FLAG)
dh_compress $(ARCH_FLAG)
dh_fixperms $(ARCH_FLAG)
-   dh_makeshlibs -p$(serpack) -V $(serpack) | $(virtpack)
dh_makeshlibs -p$(lampack) -V $(lampack)
 ifeq ($(build_openmpi),yes)
dh_makeshlibs -p$(openmpipack) -V $(openmpipack)
 endif
dh_makeshlibs -p$(mpichpack) -V $(mpichpack)
+   dh_makeshlibs -p$(serpack) -V $(serpack) | $(virtpack)
dh_installdeb $(ARCH_FLAG)
-   dh_shlibdeps -phdf5-tools -Lhdf5-tools 
-ldebian/$(serpack)/usr/lib:debian/build-serial/test/.libs
dh_shlibdeps -p$(serpack) -L$(serpack) 
-ldebian/$(serpack)/usr/lib:debian/build-serial/test/.libs
+   dh_shlibdeps -phdf5-tools -L$(serpack) 
-ldebian/$(serpack)/usr/lib:debian/build-serial/test/.libs 
dh_shlibdeps -p$(lampack) -L$(lampack) -ldebian/$(lampack)/usr/lib
 ifeq ($(build_openmpi),yes)
dh_shlibdeps -p$(openmpipack) -L$(openmpipack) 
-ldebian/$(openmpipack)/usr/lib
@@ -269,4 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit f7c733ce4281faa2ec2e52fbfce59bcbb9d29a18
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Thu Jan 21 12:52:48 2010 +

Adding previous NMU fix.

diff --git a/debian/changelog b/debian/changelog
index a66be5c..8fb6e3d 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -9,8 +9,11 @@ hdf5 (1.8.4-1) unstable; urgency=low
   * Added support for m68k.
 (closes: #490852)
   * Patch autotools.diff rebuilt by reautoconfiscating with current tools.
+  * Incorporating NMU for not build-depends on libibverbs-dev on GNU/kFreeBSD 
+archs. Thanks aba. 
+(closes: #540875)
 
- -- Francesco Paolo Lovergine fran...@debian.org  Thu, 19 Nov 2009 11:37:21 
+0100
+ -- Francesco Paolo Lovergine fran...@debian.org  Thu, 21 Jan 2010 13:50:26 
+0100
 
 hdf5 (1.8.3-2) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index 5328d96..41bc887 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,7 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390]
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386]
 Standards-Version: 3.8.3
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
diff --git a/debian/control.in b/debian/control.in
index 0f70e17..9b56252 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -5,7 +5,7 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390]
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386]
 Standards-Version: 3.8.3
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit e716d9e75e243d45c82498a23edd5800ff7c3e18
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Thu Jan 21 13:34:14 2010 +

Added README.source

diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 000..39f1868
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,17 @@
+HDF5 for Debian, note for the mantainers
+
+
+The Debian version of HDF5 is created starting from the official tarball and
+adding some required patches managed by quilt. More information about quilt
+use are available in /usr/share/doc/quilt/README.Debian and its documentation.
+
+Note that starting from 1.8 HDF Group is not more providing a tarball of the
+library documentation. The documentation in html format is now taken by
+the HDF Group svn repository:
+
+svn export https://svn.hdfgroup.uiuc.edu/hdf5doc/branches/hdf5_1_8_4/html
+
+and a tarball is created by cleaning Makfiles and other stuff. The resulting
+archive is provided as a uuencoded archive.
+
+ -- Francesco Paolo Lovergine fran...@debian.org Fri Jun 19 22:09:25 CEST 
2009
diff --git a/debian/changelog b/debian/changelog
index 8fb6e3d..10b38e1 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,8 +2,8 @@ hdf5 (1.8.4-1) unstable; urgency=low
 
   * New upstream release.
   * Policy bumped to 3.8.3, no changes.
-  * Added a workaround in debian/rules to manage correctly mpich fortran 
building
-which misses header files.
+  * Added a workaround in debian/rules to manage correctly mpich fortran 
+building which misses header files.
   * Added support for superH.
 (closes: #553979)
   * Added support for m68k.

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit ab34c57c08d7172be77b2741e364d35da6caaf2a
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Thu Jan 21 13:44:25 2010 +

Fixed documentation installation.

diff --git a/debian/control b/debian/control
index 41bc887..96982c8 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,8 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386]
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386],
+ sharutils
 Standards-Version: 3.8.3
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
diff --git a/debian/control.in b/debian/control.in
index 9b56252..b97cb14 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -5,7 +5,8 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386]
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386],
+ sharutils
 Standards-Version: 3.8.3
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
diff --git a/debian/libhdf5-doc.install b/debian/libhdf5-doc.install
index 225d5b1..aa2d748 100644
--- a/debian/libhdf5-doc.install
+++ b/debian/libhdf5-doc.install
@@ -1,3 +1,3 @@
-#doc/html /usr/share/doc/libhdf5-doc
+html /usr/share/doc/libhdf5-doc
 examples/*.c /usr/share/doc/libhdf5-doc/examples
 c++/examples/*.{cpp,h5,out} /usr/share/doc/libhdf5-doc/examples/c++
diff --git a/debian/rules b/debian/rules
index 58d66af..a699537 100755
--- a/debian/rules
+++ b/debian/rules
@@ -180,6 +180,7 @@ build-stamp-mpich: configure-stamp-mpich
 clean: unpatch
test -f debian/control.in
dh_testroot
+   -rm -rf html
-rm -rf debian/build-serial
-rm -rf debian/build-lam
-rm -rf debian/build-openmpi
@@ -225,6 +226,8 @@ install-mpich: build-stamp-mpich
 install-doc:
dh_testdir
dh_testroot
+   # extract documentation
+   uudecode -o -  debian/html.tgz.uu | tar xzf -
dh_install -p$(package)-doc -X Dependencies -X Makefile.in -X 
CppUserNotes.doc
 
 binary-indep: install-doc

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 76a897d24713571225b7ad9364858ccdfd5cbc3f
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Wed Feb 3 09:40:43 2010 +

Added test target.

diff --git a/debian/changelog b/debian/changelog
index 87f5455..a691e2f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,7 @@
 hdf5 (1.8.4-6) unstable; urgency=low
 
   * Fixed typo in 1.8.4-4 changelog.
+  * Added a useful test target in debian/rules to run the auto test suite.
 
  -- Francesco Paolo Lovergine fran...@debian.org  Tue, 02 Feb 2010 15:27:09 
+0100
 
diff --git a/debian/rules b/debian/rules
index 896df73..039346e 100755
--- a/debian/rules
+++ b/debian/rules
@@ -182,6 +182,13 @@ build-stamp-mpich: configure-stamp-mpich
$(MAKE) -C debian/build-mpich/
touch $@
 
+#
+# Be sure to not have a previous version installed before running
+# the test suite
+#
+test: build-stamp-serial
+   $(MAKE) -C debian/build-serial/ test
+
 clean: unpatch
test -f debian/control.in
dh_testroot

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 70d989f928655b9660f3a6fc73ea4ffd3f6939eb
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Jan 29 11:29:43 2010 +

Fixed sigbus error in H5detect.

diff --git a/debian/changelog b/debian/changelog
index e5939e2..83600d3 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,13 @@
+hdf5 (1.8.4-4) unstable; urgency=low
+
+  * New patch sigbus.diff to revert changes done in 1.8.4 for SIGBUS/SIGSEGV 
+handlers which cause sigbus error on space, mips and mipsel in H5detect. 
+(closes: #567256)
+  * SuperH saga ends hopefully with a final patch to debian/rules. 
+Thanks Nobuhiro Iwamatsu. (closes: #553979)
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Fri, 29 Jan 2010 12:27:12 
+0100
+
 hdf5 (1.8.4-3) unstable; urgency=low
 
   * All libraries have to conflict against past 1.8.3 virtual package to solve
diff --git a/debian/patches/series b/debian/patches/series
index 8902f5f..b41f792 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 autotools.diff -p1
 mpi.diff
+sigbus.diff
diff --git a/debian/patches/sigbus.diff b/debian/patches/sigbus.diff
new file mode 100644
index 000..e209b8d
--- /dev/null
+++ b/debian/patches/sigbus.diff
@@ -0,0 +1,30 @@
+Index: hdf5-1.8.4/src/H5detect.c
+===
+--- hdf5-1.8.4.orig/src/H5detect.c 2010-01-29 12:21:36.0 +0100
 hdf5-1.8.4/src/H5detect.c  2010-01-29 12:21:52.0 +0100
+@@ -470,6 +470,12 @@
+ static void
+ sigsegv_handler(int UNUSED signo)
+ {
++sigset_t set;
++
++sigemptyset(set);
++sigaddset(set,SIGSEGV);
++sigprocmask(SIG_UNBLOCK,set,NULL);
++
+ signal(SIGSEGV, sigsegv_handler);
+ longjmp(jbuf_g, 1);
+ }
+@@ -495,6 +501,12 @@
+ static void
+ sigbus_handler(int UNUSED signo)
+ {
++sigset_t set;
++
++sigemptyset(set);
++sigaddset(set,SIGBUS);
++sigprocmask(SIG_UNBLOCK,set,NULL);
++
+ signal(SIGBUS, sigbus_handler);
+ longjmp(jbuf_g, 1);
+ #ifdef H5_HAVE_SIGLONGJMP
diff --git a/debian/rules b/debian/rules
index 3e8bb13..240fdae 100755
--- a/debian/rules
+++ b/debian/rules
@@ -49,6 +49,8 @@ else ifeq ($(DEB_BUILD_ARCH),mipsel)
 build_openmpi = no
 else ifeq ($(DEB_BUILD_ARCH),s390)
 build_openmpi = no
+else ifeq ($(DEB_BUILD_ARCH),sh4)
+build_openmpi = no
 else
 build_openmpi = yes
 endif

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit caaa160d14e5a87855e9e3205149718addec1be9
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Tue Feb 2 11:31:57 2010 +

Turn optimization off.

diff --git a/debian/changelog b/debian/changelog
index 83600d3..f69898d 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+hdf5 (1.8.4-5) unstable; urgency=low
+
+  * Now forces optimization off (-O0) in debian/rules due to some known 
problems
+with gcc 4.3+ for 1.8.4. This is required to override Debian build 
evnironment 
+settings.
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Tue, 02 Feb 2010 12:29:07 
+0100
+
 hdf5 (1.8.4-4) unstable; urgency=low
 
   * New patch sigbus.diff to revert changes done in 1.8.4 for SIGBUS/SIGSEGV 
diff --git a/debian/rules b/debian/rules
index 240fdae..896df73 100755
--- a/debian/rules
+++ b/debian/rules
@@ -79,6 +79,8 @@ endif
 DEBCC=gcc
 DEBCXX=g++
 DEBFORTRAN=gfortran
+# With gcc 4.3+ force optimization off, else some tests fail...
+DEBOPT=-O0
 # endif
 ###
 
@@ -120,7 +122,7 @@ configure-stamp-serial: configure-stamp-debian
dh_testdir
-mkdir debian/build-serial
 # configure serial version
-   cd debian/build-serial  CC=$(DEBCC) CXX=$(DEBCXX) F9X=$(DEBFORTRAN) \
+   cd debian/build-serial  CC=$(DEBCC) CXX=$(DEBCXX) F9X=$(DEBFORTRAN) 
CFLAGS=$(DEBOPT) CXXFLAGS=$(DEBOPT) FFLAGS=$(DEBOPT) \
../../configure $(CONFIGURE_FLAGS) $(SERIAL_ONLY_FLAGS) 
touch $@
 
@@ -128,7 +130,7 @@ configure-stamp-lam: configure-stamp-debian
dh_testdir
-mkdir debian/build-lam
 # configure version with lam
-   cd debian/build-lam  CPPFLAGS=-I/usr/include/lam \
+   cd debian/build-lam  CPPFLAGS=-I/usr/include/lam CFLAGS=$(DEBOPT) 
CXXFLAGS=$(DEBOPT) FFLAGS=$(DEBOPT) \
CC=mpicc.lam RUNPARALLEL=/usr/bin/mpirun.lam \
../../configure $(CONFIGURE_FLAGS) \
--enable-parallel=yes
@@ -138,7 +140,7 @@ configure-stamp-openmpi: configure-stamp-debian
dh_testdir
-mkdir debian/build-openmpi
 # configure version with openmpi
-   cd debian/build-openmpi  CPPFLAGS=-I/usr/lib/openmpi/include \
+   cd debian/build-openmpi  CPPFLAGS=-I/usr/lib/openmpi/include 
CFLAGS=$(DEBOPT) CXXFLAGS=$(DEBOPT) FFLAGS=$(DEBOPT) \
CC=mpicc.openmpi F9X=mpif90.openmpi 
RUNPARALLEL=/usr/bin/mpirun.openmpi \
OMPI_MCA_disable_memory_allocator=1 ../../configure 
$(CONFIGURE_FLAGS) --enable-fortran \
--enable-parallel=yes
@@ -148,7 +150,7 @@ configure-stamp-mpich: configure-stamp-debian
dh_testdir
-mkdir debian/build-mpich
 # configure version with mpich
-   cd debian/build-mpich  FCFLAGS=-I/usr/lib/mpich/include/ \
+   cd debian/build-mpich  FCFLAGS=-I/usr/lib/mpich/include/ 
CFLAGS=$(DEBOPT) CXXFLAGS=$(DEBOPT) FFLAGS=$(DEBOPT) \
LDFLAGS=-L/usr/lib/mpich/lib/ CC=mpicc.mpich \
CXX=mpiCC.mpich F9X=mpif90.mpich 
RUNPARALLEL=/usr/bin/mpirun.mpich \
../../configure $(CONFIGURE_FLAGS) --enable-fortran \

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit e2766b912f7da601a789960306408ea3479d9f59
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Mon Jan 25 16:40:57 2010 +

Sigh, still urgent change.

diff --git a/debian/changelog b/debian/changelog
index 32c1b6d..e5939e2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+hdf5 (1.8.4-3) unstable; urgency=low
+
+  * All libraries have to conflict against past 1.8.3 virtual package to solve
+previous mess.
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Mon, 25 Jan 2010 17:37:39 
+0100
+
 hdf5 (1.8.4-2) unstable; urgency=low
 
   * Current library still retains the 1.8 SONAME and that causes problems 
diff --git a/debian/control b/debian/control
index 4a5bce6..35b85b2 100644
--- a/debian/control
+++ b/debian/control
@@ -18,7 +18,7 @@ Architecture: any
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-serial-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
-Replaces: libhdf5-serial-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -49,7 +49,7 @@ Architecture: any
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-lam-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
-Replaces: libhdf5-lam-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - LAM version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -81,7 +81,7 @@ Architecture: alpha amd64 i386 ia64 powerpc sparc 
kfreebsd-i386 kfreebsd-amd64
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-openmpi-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
-Replaces: libhdf5-openmpi-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -113,7 +113,7 @@ Architecture: any
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-mpich-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
-Replaces: libhdf5-mpich-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
diff --git a/debian/control.in b/debian/control.in
index 98235ee..72fc64a 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -18,7 +18,7 @@ Architecture: any
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-serial-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-serial-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -49,7 +49,7 @@ Architecture: any
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-lam-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-lam-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - LAM version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -81,7 +81,7 @@ Architecture: @ARCHS@
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-openmpi-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-openmpi-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -113,7 +113,7 @@ Architecture: any
 Depends: ${shlibs:Depends}
 Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-mpich-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-mpich-1.8.3
+Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of

-- 
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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 9d9fd9a5c81079721def21ced1e0b61d547ad11a
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Mon Jan 25 10:11:16 2010 +

Fixed migration issue.

diff --git a/debian/README.source b/debian/README.source
index 39f1868..f9c6f57 100644
--- a/debian/README.source
+++ b/debian/README.source
@@ -14,4 +14,12 @@ svn export 
https://svn.hdfgroup.uiuc.edu/hdf5doc/branches/hdf5_1_8_4/html
 and a tarball is created by cleaning Makfiles and other stuff. The resulting
 archive is provided as a uuencoded archive.
 
- -- Francesco Paolo Lovergine fran...@debian.org Fri Jun 19 22:09:25 CEST 
2009
+About versioning style. In very recent times (since 1.8 series) HDF Group
+introduced a libtool SONAME versioning in the library with major/minor 
releases.
+Unfortunately, past experieces showed that API retention has been sometimes
+violated in the past, so current packages use a defensive approach by 
considering
+each release as not back-compatible. This is also motivated by the presence of
+of C++ and Fortran bindings as well as multiple MPI editions, which could 
imply 
+ABI breakages even for minor releases. Be defensive is more safe, definitively
+
+ -- Francesco Paolo Lovergine fran...@debian.org Mon Jan 25 06:00:00 CET 2010
diff --git a/debian/changelog b/debian/changelog
index 1001abb..32c1b6d 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,16 @@
+hdf5 (1.8.4-2) unstable; urgency=low
+
+  * Current library still retains the 1.8 SONAME and that causes problems 
+in upgrading. Unfortunately HDF5 library has a long history of API/ABI 
violations
+among minor revisions. So introducing one more virtual package to 
provide/conflict
+and also coflicting against last 1.8.3 package for managing a safe upgrade.
+See README.source for more information.
+(closes: #566540, #566339, #566533, #566738, #566698)
+  * Completed superH support.
+(closes: #553979)
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Mon, 25 Jan 2010 10:31:47 
+0100
+
 hdf5 (1.8.4-1) unstable; urgency=low
 
   * New upstream release.
diff --git a/debian/control b/debian/control
index 96982c8..4a5bce6 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,7 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386],
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils
 Standards-Version: 3.8.3
 Homepage: http://hdfgroup.org/HDF5/
@@ -16,8 +16,9 @@ Package: libhdf5-serial-1.8.4
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4
-Provides: libhdf5-1.8.4
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-serial-1.8.3
+Provides: libhdf5-1.8.4, libhdf5-1.8
+Replaces: libhdf5-serial-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -46,8 +47,9 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4
-Provides: libhdf5-1.8.4
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-lam-1.8.3
+Provides: libhdf5-1.8.4, libhdf5-1.8
+Replaces: libhdf5-lam-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - LAM version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -77,8 +79,9 @@ Section: libs
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4
-Provides: libhdf5-1.8.4
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-openmpi-1.8.3
+Provides: libhdf5-1.8.4, libhdf5-1.8
+Replaces: libhdf5-openmpi-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -108,8 +111,9 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4
-Provides: libhdf5-1.8.4
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-mpich-1.8.3
+Provides: libhdf5-1.8.4, libhdf5-1.8
+Replaces: libhdf5-mpich-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
diff --git a/debian/control.in 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 669129221f9401995a3748b7258b7b111050b543
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Apr 23 09:33:28 2010 +

Adding default-mpi support.

diff --git a/debian/changelog b/debian/changelog
index 04949e1..0c196f3 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,14 @@
+hdf5 (1.8.4-7) unstable; urgency=low
+
+  [ Adam C. Powell, IV ]
+  * Added libhdf5-mpi-dev package which simply depends on default MPI version
+of HDF5 for each platform.
+
+  [ Francesco Paolo Lovergine ]
+  * Policy bumped to 3.8.4, no changes required. 
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Fri, 23 Apr 2010 11:32:55 
+0200
+
 hdf5 (1.8.4-patch1-1) unstable; urgency=low
 
   * New upstream patch release.
diff --git a/debian/control b/debian/control
index 23182c0..d63cbd4 100644
--- a/debian/control
+++ b/debian/control
@@ -6,8 +6,8 @@ Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
- sharutils
-Standards-Version: 3.8.3
+ sharutils, mpi-default-dev
+Standards-Version: 3.8.4
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
 Vcs-Svn: svn://svn.debian.org/svn/pkg-grass/packages/hdf5/trunk
@@ -163,3 +163,16 @@ Description: Hierarchical Data Format 5 (HDF5) - Runtime 
tools
  files larger than 2 GB, and supports parallel I/O.
  .
  This package contains runtime tools for HDF5.
+ 
+Package: libhdf5-mpi-dev
+Section: libdevel
+Priority: extra
+Architecture: any
+Depends: ${hdf5-mpi-dev}, mpi-default-dev
+Description: Hierarchical Data Format 5 (HDF5) - development files - MPICH 
version
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package depends on the default MPI version of HDF5 for each platform.
diff --git a/debian/control.in b/debian/control.in
index 7750978..99d1372 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -6,8 +6,8 @@ Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
- sharutils
-Standards-Version: 3.8.3
+ sharutils, mpi-default-dev
+Standards-Version: 3.8.4
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
 Vcs-Svn: svn://svn.debian.org/svn/pkg-grass/packages/hdf5/trunk
@@ -140,6 +140,19 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - MPICH versi
  This package contains development files for use with MPICH. Warning:
  the C++ interface is not provided for this version.
 
+Package: libhdf5-mpi-dev
+Section: libdevel
+Priority: extra
+Architecture: any
+Depends: ${hdf5-mpi-dev}, mpi-default-dev
+Description: Hierarchical Data Format 5 (HDF5) - development files - MPICH 
version
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package depends on the default MPI version of HDF5 for each platform.
+
 Package: libhdf5-doc
 Section: doc
 Architecture: all
@@ -163,3 +176,4 @@ Description: Hierarchical Data Format 5 (HDF5) - Runtime 
tools
  files larger than 2 GB, and supports parallel I/O.
  .
  This package contains runtime tools for HDF5.
+ 
diff --git a/debian/rules b/debian/rules
index a4b9516..3c580a9 100755
--- a/debian/rules
+++ b/debian/rules
@@ -22,6 +22,8 @@ DEB_HOST_GNU_TYPE   ?= $(shell dpkg-architecture 
-qDEB_HOST_GNU_TYPE)
 DEB_BUILD_GNU_TYPE  ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
 DEB_BUILD_ARCH  ?= $(shell dpkg-architecture -qDEB_BUILD_ARCH)
 
+DEFAULT_MPI=$(shell readlink /etc/alternatives/mpi | sed s/usr//g | sed 
s/include//g | sed s/lib//g | sed s/\\///g)
+
 patch: patch-stamp
 patch-stamp:
QUILT_PATCHES=debian/patches quilt push --color=auto -a || [ $$? = 2 ]
@@ -257,6 +259,7 @@ binary-indep: install-doc
 binary-arch: prep install-serial install-lam $(install_openmpi) install-mpich
dh_testdir
dh_testroot 
+   echo hdf5-mpi-dev=libhdf5-$(DEFAULT_MPI)-dev  
debian/libhdf5-mpi-dev.substvars
   

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 5d8571c7ea398c1538a45ee7dbb63f449e8f9c89
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Apr 23 09:56:26 2010 +

Fixed version.

diff --git a/debian/changelog b/debian/changelog
index 6e82788..f40a886 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-hdf5 (1.8.4-7) unstable; urgency=low
+hdf5 (1.8.4-patch1-2) unstable; urgency=low
 
   [ Adam C. Powell, IV ]
   * Added libhdf5-mpi-dev package which simply depends on default MPI version

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 8c41d4786b2dae4ba30181f3331976f276830507
Merge: 2c4e74de1fb6a2e97df6a47aebca38e6fac37f1c 
e602f9b5b31a9d0da5271e4a996962306365260b
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Mon Feb 28 10:14:27 2011 +0100

Merge branch 'master' of ssh://git.debian.org/git/pkg-grass/hdf5


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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 93087290344e1ab987394288cdcaab616657
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Mar 9 12:56:59 2011 +0100

No longer relevant

diff --git a/debian/patches/sigbus.diff b/debian/patches/sigbus.diff
deleted file mode 100644
index e69de29..000

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 212b9c1ddf229a30e73cca66432a0ca4ace8ce19
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Tue Feb 2 14:27:52 2010 +

Minor fix to changelog.

diff --git a/debian/changelog b/debian/changelog
index f69898d..87f5455 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.4-6) unstable; urgency=low
+
+  * Fixed typo in 1.8.4-4 changelog.
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Tue, 02 Feb 2010 15:27:09 
+0100
+
 hdf5 (1.8.4-5) unstable; urgency=low
 
   * Now forces optimization off (-O0) in debian/rules due to some known 
problems
@@ -9,7 +15,7 @@ hdf5 (1.8.4-5) unstable; urgency=low
 hdf5 (1.8.4-4) unstable; urgency=low
 
   * New patch sigbus.diff to revert changes done in 1.8.4 for SIGBUS/SIGSEGV 
-handlers which cause sigbus error on space, mips and mipsel in H5detect. 
+handlers which cause sigbus error on sparc, mips and mipsel in H5detect. 
 (closes: #567256)
   * SuperH saga ends hopefully with a final patch to debian/rules. 
 Thanks Nobuhiro Iwamatsu. (closes: #553979)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 419389668204fb5ab9bd629303b6392e0de5640b
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri Feb 25 10:49:40 2011 +0100

Right version (1.8.6)

diff --git a/debian/changelog b/debian/changelog
index 0961e76..b7f7d6a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-hdf5 (1.8.4-patch1-3) unstable; urgency=low
+hdf5 (1.8.6-1) unstable; urgency=low
 
   * Moved repository to git and changed Vcs-* fields.
   * Now using source format 3.0 and removed quilt build-dep.

-- 
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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 07d2ff3154706a370257ecbf0e892c73b33ae2cb
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Apr 23 09:55:27 2010 +

Fixed debian/control

diff --git a/debian/control b/debian/control
index d63cbd4..2eefaed 100644
--- a/debian/control
+++ b/debian/control
@@ -140,6 +140,19 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - MPICH versi
  This package contains development files for use with MPICH. Warning:
  the C++ interface is not provided for this version.
 
+Package: libhdf5-mpi-dev
+Section: libdevel
+Priority: extra
+Architecture: any
+Depends: ${hdf5-mpi-dev}, mpi-default-dev
+Description: Hierarchical Data Format 5 (HDF5) - development files - MPICH 
version
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package depends on the default MPI version of HDF5 for each platform.
+
 Package: libhdf5-doc
 Section: doc
 Architecture: all
@@ -164,15 +177,3 @@ Description: Hierarchical Data Format 5 (HDF5) - Runtime 
tools
  .
  This package contains runtime tools for HDF5.
  
-Package: libhdf5-mpi-dev
-Section: libdevel
-Priority: extra
-Architecture: any
-Depends: ${hdf5-mpi-dev}, mpi-default-dev
-Description: Hierarchical Data Format 5 (HDF5) - development files - MPICH 
version
- HDF5 is a file format and library for storing scientific data. 
- HDF5 was designed and implemented to address the deficiencies of
- HDF4.x. It has a more powerful and flexible data model, supports
- files larger than 2 GB, and supports parallel I/O.
- .
- This package depends on the default MPI version of HDF5 for each platform.

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 5d4e93bfc6b345217958f0bc2412e46048eaa888
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Mon Jan 25 16:44:07 2010 +

One more virtual conflict.

diff --git a/debian/control b/debian/control
index 35b85b2..23182c0 100644
--- a/debian/control
+++ b/debian/control
@@ -16,7 +16,7 @@ Package: libhdf5-serial-1.8.4
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-serial-1.8.3
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
@@ -47,7 +47,7 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-lam-1.8.3
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - LAM version
@@ -79,7 +79,7 @@ Section: libs
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-openmpi-1.8.3
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
@@ -111,7 +111,7 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-mpich-1.8.3
+Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH version
diff --git a/debian/control.in b/debian/control.in
index 72fc64a..7750978 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -16,7 +16,7 @@ Package: libhdf5-serial-@VERSION@
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-serial-1.8.3
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
@@ -47,7 +47,7 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-lam-1.8.3
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - LAM version
@@ -79,7 +79,7 @@ Section: libs
 Priority: extra
 Architecture: @ARCHS@
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-openmpi-1.8.3
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
@@ -111,7 +111,7 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-mpich-1.8.3
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH version

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 2c4e74de1fb6a2e97df6a47aebca38e6fac37f1c
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Feb 25 11:15:59 2011 +0100

Typo fixed in changelog

diff --git a/debian/changelog b/debian/changelog
index b7f7d6a..5842284 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,7 +3,7 @@ hdf5 (1.8.6-1) unstable; urgency=low
   * Moved repository to git and changed Vcs-* fields.
   * Now using source format 3.0 and removed quilt build-dep.
   * Policy bumped to 3.9.1, no changes required.
-  * Added ${misc:Depends} to all binary package due to dh use.
+  * Added ${misc:Depends} to all binary packages due to dh use.
 
   [ Sylvestre Ledru ]
   * New upstream release (Closes: #586232)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 64540dcf422b1b6d36c4434c6a8d75c98edc7bff
Merge: d5ede42ba85d3eb6efe2419244d17ff3f644012f 
620742b0f3d1e0890cf9bc0ec04462e6e2565dab
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Feb 25 00:20:31 2011 +0100

Merge commit 'upstream/1.8.4-patch1'


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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 8c16398447810466d5fc2c05463244569b188ecc
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Apr 23 09:34:06 2010 +

Annotation

diff --git a/debian/changelog b/debian/changelog
index 0c196f3..6e82788 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,6 +3,7 @@ hdf5 (1.8.4-7) unstable; urgency=low
   [ Adam C. Powell, IV ]
   * Added libhdf5-mpi-dev package which simply depends on default MPI version
 of HDF5 for each platform.
+(closes: #510057)
 
   [ Francesco Paolo Lovergine ]
   * Policy bumped to 3.8.4, no changes required. 

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 151b8c54199b06d2dd5b21ce3e3c0a1f8589c864
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Mar 9 13:48:55 2011 +0100

split in two patches

diff --git a/debian/patches/allowthreadsafe.diff 
b/debian/patches/allowthreadsafe.diff
new file mode 100644
index 000..33779ee
--- /dev/null
+++ b/debian/patches/allowthreadsafe.diff
@@ -0,0 +1,23 @@
+diff --git a/configure.in b/configure.in
+index adfed1f..543a4ed 100644
+--- a/configure.in
 b/configure.in
+@@ -1876,17 +1876,6 @@ AC_ARG_ENABLE([threadsafe],
+   [Enable thread safe capability])],
+   THREADSAFE=$enableval)
+ 
+-dnl The --enable-threadsafe flag is not compatible with --enable-cxx.
+-dnl If the user tried to specify both flags, throw an error.
+-if test X${HDF_CXX} = Xyes -a X${enable_threadsafe} = Xyes; then
+-  AC_MSG_ERROR([--enable-cxx and --enable-threadsafe flags are incompatible])
+-fi
+-
+-dnl --enable-threadsafe is also incompatible with --enable-fortran.
+-if test X${HDF_FORTRAN} = Xyes -a X${enable_threadsafe} = Xyes; then
+-  AC_MSG_ERROR([--enable-fortran and --enable-threadsafe flags are 
incompatible])
+-fi
+-
+ case X-$THREADSAFE in
+   X-|X-no)
+ AC_MSG_RESULT([no])
+
diff --git a/debian/patches/autotools.diff b/debian/patches/autotools.diff
index bd11f75..f8db3c8 100644
--- a/debian/patches/autotools.diff
+++ b/debian/patches/autotools.diff
@@ -11668,25 +11668,3 @@ index f7c667d..eef825e 100755
  esac
  ;;
esac
-diff --git a/configure.in b/configure.in
-index adfed1f..543a4ed 100644
 a/configure.in
-+++ b/configure.in
-@@ -1876,17 +1876,6 @@ AC_ARG_ENABLE([threadsafe],
-   [Enable thread safe capability])],
-   THREADSAFE=$enableval)
- 
--dnl The --enable-threadsafe flag is not compatible with --enable-cxx.
--dnl If the user tried to specify both flags, throw an error.
--if test X${HDF_CXX} = Xyes -a X${enable_threadsafe} = Xyes; then
--  AC_MSG_ERROR([--enable-cxx and --enable-threadsafe flags are incompatible])
--fi
--
--dnl --enable-threadsafe is also incompatible with --enable-fortran.
--if test X${HDF_FORTRAN} = Xyes -a X${enable_threadsafe} = Xyes; then
--  AC_MSG_ERROR([--enable-fortran and --enable-threadsafe flags are 
incompatible])
--fi
--
- case X-$THREADSAFE in
-   X-|X-no)
- AC_MSG_RESULT([no])
diff --git a/debian/patches/series b/debian/patches/series
index cd8c2f3..70c1730 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,4 @@ mpi.diff
 sscanf.diff
 autotools.diff
 
+allowthreadsafe.diff

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 104e18502b94d4c47203c5c6feba9406dccb3b93
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Mar 11 10:27:43 2011 +0100

Fixed changelog

diff --git a/debian/changelog b/debian/changelog
index c887c6f..f4087bb 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -9,7 +9,7 @@ hdf5 (1.8.6-1) experimental; urgency=low
   * Fix a bad usage of sscanf in the hdf5 code which was introducing
 a dependency on the glibc 2.7 (Closes: #599541)
   * Patch sigbus.diff removed (upstream)
-  * Patch autotools.diff removed (hdf5 1.8.6 is using autoconf 2.67)
+  * Patch autotools.diff updated by manual autoreconfing.
 
   [ Francesco Paolo Lovergine ]
   * Moved repository to git and changed Vcs-* fields.

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 86e975ed461b533a8802472026a66462b7a744a7
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Mar 9 13:25:19 2011 +0100

Preparation of the upload

diff --git a/debian/changelog b/debian/changelog
index 5ad5138..c887c6f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,12 +1,5 @@
-hdf5 (1.8.6-1) unstable; urgency=low
+hdf5 (1.8.6-1) experimental; urgency=low
 
-  * Moved repository to git and changed Vcs-* fields.
-  * Now using source format 3.0 and removed quilt build-dep.
-  * Policy bumped to 3.9.1, no changes required.
-  * Added ${misc:Depends} to all binary packages due to dh use.
-  * Removed virtual libhdf5-1.8.3 targets, obsolete after squeeze release.
-
-  [ Sylvestre Ledru ]
   * New upstream release (Closes: #586232)
   * Default to 1.8 interface instead of 1.6 (Closes: #537414)
   * Remove dependency on libjpeg62-dev (Closes: #569234)
@@ -18,7 +11,14 @@ hdf5 (1.8.6-1) unstable; urgency=low
   * Patch sigbus.diff removed (upstream)
   * Patch autotools.diff removed (hdf5 1.8.6 is using autoconf 2.67)
 
- -- Francesco Paolo Lovergine fran...@debian.org  Mon, 28 Feb 2011 13:44:53 
+0100
+  [ Francesco Paolo Lovergine ]
+  * Moved repository to git and changed Vcs-* fields.
+  * Now using source format 3.0 and removed quilt build-dep.
+  * Policy bumped to 3.9.1, no changes required.
+  * Added ${misc:Depends} to all binary packages due to dh use.
+  * Removed virtual libhdf5-1.8.3 targets, obsolete after squeeze release.
+
+ -- Sylvestre Ledru sylves...@debian.org  Wed, 09 Mar 2011 13:24:10 +0100
 
 hdf5 (1.8.4-patch1-2) unstable; urgency=low
 
diff --git a/debian/patches/series b/debian/patches/series
index 10b2178..cd8c2f3 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,5 +1,4 @@
 mpi.diff
 sscanf.diff
-allowthreadsafe.diff
 autotools.diff
 

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit dba4ce79d725c8c4ab4caf8a400795c1edfd4070
Merge: 5173e311f3926b663f5b822cb4d3f11788a6da41 
455e146299fd3057011102c48e2fb9676658a7e9
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon May 16 13:15:36 2011 +0200

Merge commit 'upstream/1.8.7'


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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 66499bce43eb058deb7496e81576e49b5a241bbf
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri May 13 15:28:44 2011 +0200

  * Get ride of the -m128bit-long-double FFLAGS (was introduced to fix bug
#619281)

diff --git a/debian/changelog b/debian/changelog
index f5104b5..66f1859 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+hdf5 (1.8.6-3) experimental; urgency=low
+
+  * Get ride of the -m128bit-long-double FFLAGS (was introduced to fix bug
+#619281)
+
+ -- Sylvestre Ledru sylves...@debian.org  Fri, 13 May 2011 15:26:12 +0200
+
 hdf5 (1.8.6-2) experimental; urgency=low
 
   * Disable the r16 check (Closes: #619281)
diff --git a/debian/rules b/debian/rules
index 115b968..a8ae4b3 100755
--- a/debian/rules
+++ b/debian/rules
@@ -70,12 +70,11 @@ endif
 # else
 DEBCC=gcc
 DEBCXX=g++
-DEBFORTRAN=gfortran-4.6  # cf bug #622783
+DEBFORTRAN=gfortran  # cf bug #622783
 # With gcc 4.3+ force optimization off, else some tests fail...
 #DEBOPT=-O0
 # endif
 ###
-FFLAGS+= $(DEBOPT) -m128bit-long-double
 
 export MPICH2_CC=$(DEBCC)
 export MPICH2_CLINKER=$(DEBCC)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 8e3d8c03573869cd6c61a4c3721b5f325d5dad04
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Mar 10 13:15:04 2011 +0100

Use the start flags + fix the fortran failure

diff --git a/debian/rules b/debian/rules
index 0f3bcad..0fb3172 100755
--- a/debian/rules
+++ b/debian/rules
@@ -75,6 +75,7 @@ endif
 #DEBOPT=-O0
 # endif
 ###
+FFLAGS+= $(DEBOPT) -m128bit-long-double
 
 export MPICH2_CC=$(DEBCC)
 export MPICH2_CLINKER=$(DEBCC)
@@ -112,7 +113,7 @@ configure-stamp-serial: configure-stamp-debian
dh_testdir
-mkdir debian/build-serial
 # configure serial version
-   cd debian/build-serial  CC=$(DEBCC) CXX=$(DEBCXX) F9X=$(DEBFORTRAN) 
CFLAGS=$(DEBOPT) CXXFLAGS=$(DEBOPT) FFLAGS=$(DEBOPT) \
+   cd debian/build-serial  CC=$(DEBCC) CXX=$(DEBCXX) F9X=$(DEBFORTRAN) 
CFLAGS=$(CFLAGS) CXXFLAGS=$(CXXFLAGS) FFLAGS=$(FFLAGS) \
../../configure $(CONFIGURE_FLAGS) $(SERIAL_ONLY_FLAGS) 
touch $@
 
@@ -120,7 +121,7 @@ configure-stamp-openmpi: configure-stamp-debian
dh_testdir
-mkdir debian/build-openmpi
 # configure version with openmpi
-   cd debian/build-openmpi  CPPFLAGS=-I/usr/lib/openmpi/include 
CFLAGS=$(DEBOPT) CXXFLAGS=$(DEBOPT) FFLAGS=$(DEBOPT) \
+   cd debian/build-openmpi  CPPFLAGS=-I/usr/lib/openmpi/include 
CFLAGS=$(CFLAGS) CXXFLAGS=$(CXXFLAGS) FFLAGS=$(FFLAGS) \
CC=mpicc.openmpi F9X=mpif90.openmpi 
RUNPARALLEL=/usr/bin/mpirun.openmpi \
OMPI_MCA_disable_memory_allocator=1 ../../configure 
$(CONFIGURE_FLAGS) --enable-fortran \
--enable-parallel=yes
@@ -130,7 +131,7 @@ configure-stamp-mpich2: configure-stamp-debian
dh_testdir
-mkdir debian/build-mpich2
 # configure version with mpich2
-   cd debian/build-mpich2  FCFLAGS=-I/usr/lib/mpich2/include/ 
CFLAGS=$(DEBOPT) CXXFLAGS=$(DEBOPT) FFLAGS=$(DEBOPT) \
+   cd debian/build-mpich2  FCFLAGS=-I/usr/lib/mpich2/include/ 
CFLAGS=$(CFLAGS) CXXFLAGS=$(CXXFLAGS) FFLAGS=$(FFLAGS) \
LDFLAGS=-L/usr/lib/mpich2/lib/ CC=mpicc.mpich2 \
CXX=mpiCC.mpich2 F9X=mpif90.mpich2 
RUNPARALLEL=/usr/bin/mpirun.mpich2 \
../../configure $(CONFIGURE_FLAGS) --enable-fortran \

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 3a3d523c789711b80373b9d24a9c23958962027d
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sat Mar 19 19:47:17 2011 +0100

  * Add myself to the uploader
  * Added ${misc:Depends} to libhdf5-doc

diff --git a/debian/changelog b/debian/changelog
index f4087bb..dd5a4b5 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -10,6 +10,8 @@ hdf5 (1.8.6-1) experimental; urgency=low
 a dependency on the glibc 2.7 (Closes: #599541)
   * Patch sigbus.diff removed (upstream)
   * Patch autotools.diff updated by manual autoreconfing.
+  * Add myself to the uploader
+  * Added ${misc:Depends} to libhdf5-doc
 
   [ Francesco Paolo Lovergine ]
   * Moved repository to git and changed Vcs-* fields.
@@ -18,7 +20,7 @@ hdf5 (1.8.6-1) experimental; urgency=low
   * Added ${misc:Depends} to all binary packages due to dh use.
   * Removed virtual libhdf5-1.8.3 targets, obsolete after squeeze release.
 
- -- Sylvestre Ledru sylves...@debian.org  Wed, 09 Mar 2011 13:24:10 +0100
+ -- Sylvestre Ledru sylves...@debian.org  Sat, 19 Mar 2011 19:46:36 +0100
 
 hdf5 (1.8.4-patch1-2) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index 154d46b..b543763 100644
--- a/debian/control
+++ b/debian/control
@@ -2,7 +2,8 @@ Source: hdf5
 Section: science
 Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
-Uploaders: Francesco Paolo Lovergine fran...@debian.org
+Uploaders: Francesco Paolo Lovergine fran...@debian.org,
+  Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
diff --git a/debian/control.in b/debian/control.in
index e3b1cca..3df0b4a 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -2,7 +2,8 @@ Source: hdf5
 Section: science
 Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
-Uploaders: Francesco Paolo Lovergine fran...@debian.org
+Uploaders: Francesco Paolo Lovergine fran...@debian.org,
+ Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
@@ -127,6 +128,7 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - MPICH2 vers
 Package: libhdf5-doc
 Section: doc
 Architecture: all
+Depends: ${misc:Depends}
 Suggests: libhdf5-dev, www-browser, pdf-viewer, doc-base
 Description: Hierarchical Data Format 5 (HDF5) - Documentation
  HDF5 is a file format and library for storing scientific data. 

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit e9590c978dd7fc67aea41292a72dc98d1502ddf6
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Wed Jul 27 14:00:03 2011 +0200

Ready for release.

diff --git a/debian/changelog b/debian/changelog
index 1d11008..b8e01bc 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,15 @@
-hdf5 (1.8.7-2) experimental; urgency=low
+hdf5 (1.8.7-2) unstable; urgency=low
 
-  * Support of hurd-i386. Thanks to Pino Toscano for doing the work
+  [ Sylvestre Ledru ]
+  * Support of hurd-i386. Thanks to Pino Toscano for doing the work.
 (Closes: #627896)
   * Drop the useless lam4-dev dependency. Thanks to Pino Toscano.
+(Closes: #604714)
 
- -- Sylvestre Ledru sylves...@debian.org  Wed, 25 May 2011 11:55:11 +0200
+  [ Francesco Paolo Lovergine ]
+  * Ready for unstable.
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Wed, 27 Jul 2011 13:58:59 
+0200
 
 hdf5 (1.8.7-1) experimental; urgency=low
 

-- 
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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 41061f87fd9f554f40f97afbea2b5e2da15d35f6
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Apr 14 18:33:26 2011 +0200

 * Workaround for bug #619281 while #622783 is not fixed

diff --git a/debian/changelog b/debian/changelog
index dd5a4b5..a91f935 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.6-2) experimental; urgency=low
+
+  * Workaround for bug #619281 while #622783 is not fixed
+
+ -- Sylvestre Ledru sylves...@debian.org  Thu, 14 Apr 2011 18:31:50 +0200
+
 hdf5 (1.8.6-1) experimental; urgency=low
 
   * New upstream release (Closes: #586232)
diff --git a/debian/control b/debian/control
index b543763..5d92fb9 100644
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,7 @@ Uploaders: Francesco Paolo Lovergine fran...@debian.org,
   Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
+ gfortran (= 4.6), libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
 Standards-Version: 3.9.1
 Homepage: http://hdfgroup.org/HDF5/
diff --git a/debian/rules b/debian/rules
index 2c23e62..115b968 100755
--- a/debian/rules
+++ b/debian/rules
@@ -70,7 +70,7 @@ endif
 # else
 DEBCC=gcc
 DEBCXX=g++
-DEBFORTRAN=gfortran
+DEBFORTRAN=gfortran-4.6  # cf bug #622783
 # With gcc 4.3+ force optimization off, else some tests fail...
 #DEBOPT=-O0
 # endif

-- 
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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 6b170ecf71c75f5e0f9e8b6f6ddc6a9591f6436f
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Tue Aug 2 18:26:47 2011 +0200

Remove the .la file from the distribution

diff --git a/debian/install_devlib b/debian/install_devlib
index 62110a3..ad156fa 100644
--- a/debian/install_devlib
+++ b/debian/install_devlib
@@ -1,5 +1,4 @@
 usr/include
 usr/lib/libhdf5*.so
 usr/lib/libhdf5*.settings
-usr/lib/libhdf5*.la
 usr/lib/libhdf5*.a

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit ea63ba522385499a6c05921f52100fff9c7ce0e6
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Mar 9 13:02:21 2011 +0100

Frankie request = add the diff generated by the autotools into the 
repository

diff --git a/debian/patches/allowthreadsafe.diff 
b/debian/patches/allowthreadsafe.diff
deleted file mode 100644
index f583457..000
--- a/debian/patches/allowthreadsafe.diff
+++ /dev/null
@@ -1,22 +0,0 @@
-Index: hdf5-1.8.6/configure.in
-===
 hdf5-1.8.6.orig/configure.in   2011-02-24 11:19:42.0 +0100
-+++ hdf5-1.8.6/configure.in2011-02-24 11:19:51.0 +0100
-@@ -1876,17 +1876,6 @@
-   [Enable thread safe capability])],
-   THREADSAFE=$enableval)
- 
--dnl The --enable-threadsafe flag is not compatible with --enable-cxx.
--dnl If the user tried to specify both flags, throw an error.
--if test X${HDF_CXX} = Xyes -a X${enable_threadsafe} = Xyes; then
--  AC_MSG_ERROR([--enable-cxx and --enable-threadsafe flags are incompatible])
--fi
--
--dnl --enable-threadsafe is also incompatible with --enable-fortran.
--if test X${HDF_FORTRAN} = Xyes -a X${enable_threadsafe} = Xyes; then
--  AC_MSG_ERROR([--enable-fortran and --enable-threadsafe flags are 
incompatible])
--fi
--
- case X-$THREADSAFE in
-   X-|X-no)
- AC_MSG_RESULT([no])
diff --git a/debian/patches/series b/debian/patches/series
index bf701a0..10b2178 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,3 +1,5 @@
 mpi.diff
 sscanf.diff
 allowthreadsafe.diff
+autotools.diff
+

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 88c8ca83c7fb2b895544590d7da3cab844a50864
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed May 25 12:01:48 2011 +0200

already applied

diff --git a/debian/patches/series b/debian/patches/series
index a67c11f..e6295cb 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,8 +1,4 @@
 mpi.diff
 sscanf.diff
 disabler16check.diff
-
-debian-changes-1.8.7-1
-debian_no-lam.diff
-debian_openmpi-on-hurd.diff
 path_max.diff

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit e018c3d4f10ca9761301f35e72cbd6fd27d92e05
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sat May 7 22:18:53 2011 +0200

  * Disable the r16 check (Closes: #619281)
  * Standards-Version updated to version 3.9.2

diff --git a/debian/changelog b/debian/changelog
index a91f935..f5104b5 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,7 @@
 hdf5 (1.8.6-2) experimental; urgency=low
 
-  * Workaround for bug #619281 while #622783 is not fixed
+  * Disable the r16 check (Closes: #619281)
+  * Standards-Version updated to version 3.9.2
 
  -- Sylvestre Ledru sylves...@debian.org  Thu, 14 Apr 2011 18:31:50 +0200
 
diff --git a/debian/control b/debian/control
index 5d92fb9..0007f0b 100644
--- a/debian/control
+++ b/debian/control
@@ -3,12 +3,12 @@ Section: science
 Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org,
-  Sylvestre Ledru sylves...@debian.org
+ Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
- gfortran (= 4.6), libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
-Standards-Version: 3.9.1
+Standards-Version: 3.9.2
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://git.debian.org/?p=pkg-grass/hdf5.git
 Vcs-Git: git://git.debian.org/git/pkg-grass/hdf5.git
@@ -128,6 +128,7 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - MPICH2 vers
 Package: libhdf5-doc
 Section: doc
 Architecture: all
+Depends: ${misc:Depends}
 Suggests: libhdf5-dev, www-browser, pdf-viewer, doc-base
 Description: Hierarchical Data Format 5 (HDF5) - Documentation
  HDF5 is a file format and library for storing scientific data. 
diff --git a/debian/control.in b/debian/control.in
index 3df0b4a..03acd4f 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -8,7 +8,7 @@ Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 
7.1.1-3.2),
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
-Standards-Version: 3.9.1
+Standards-Version: 3.9.2
 Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://git.debian.org/?p=pkg-grass/hdf5.git
 Vcs-Git: git://git.debian.org/git/pkg-grass/hdf5.git
diff --git a/debian/patches/disabler16check.diff 
b/debian/patches/disabler16check.diff
new file mode 100644
index 000..c789412
--- /dev/null
+++ b/debian/patches/disabler16check.diff
@@ -0,0 +1,48 @@
+diff --git a/fortran/src/H5test_kind_SIZEOF.f90 
b/fortran/src/H5test_kind_SIZEOF.f90
+index fbbe8e9..8df481e 100644
+--- a/fortran/src/H5test_kind_SIZEOF.f90
 b/fortran/src/H5test_kind_SIZEOF.f90
+@@ -124,7 +124,11 @@ WRITE(*,'(40(A,/))') 
+   ENDDO
+   DO i = 1, ir
+  j = rkind_numbers(i)
+- WRITE(*, ( CALL r, i2.2,())) j
++ IF(j .NE. 16) THEN
++! Disable the kind 16 check
++! See http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=619281
++WRITE(*, ( CALL r, i2.2,())) j
++ ENDIF
+   ENDDO
+   WRITE(*,*) END PROGRAM int_kind
+   j = 0
+@@ -175,16 +179,20 @@ WRITE(*,'(40(A,/))') 
+   ENDDO
+   DO i = 1, ir
+  j = rkind_numbers(i)
+- WRITE(*, ( SUBROUTINE r, i2.2,())) j
+- WRITE(*,*)   IMPLICIT NONE
+- WRITE(*,*)   REAL(KIND=,j,) :: a
+- WRITE(*,*)   INTEGER :: a_size
+- WRITE(*,*)   CHARACTER(LEN=2) :: ichr2
+- WRITE(*,*)   a_size = SIZEOF(a)
+- WRITE(*,*)   WRITE(ichr2,'(I2)') a_size
+- WRITE(*,*)'   WRITE(*,*) #define 
H5_FORTRAN_HAS_REAL_'ADJUSTL(ichr2)
+- WRITE(*,*)   RETURN
+- WRITE(*,*)END SUBROUTINE
++ IF(j .NE. 16) THEN
++! Disable the kind 16 check
++! See http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=619281
++WRITE(*, ( SUBROUTINE r, i2.2,())) j
++WRITE(*,*)   IMPLICIT NONE
++WRITE(*,*)   REAL(KIND=,j,) :: a
++WRITE(*,*)   INTEGER :: a_size
++WRITE(*,*)   CHARACTER(LEN=2) :: ichr2
++WRITE(*,*)   a_size = SIZEOF(a)
++WRITE(*,*)   WRITE(ichr2,'(I2)') a_size
++WRITE(*,*)'   WRITE(*,*) #define 
H5_FORTRAN_HAS_REAL_'ADJUSTL(ichr2)
++WRITE(*,*)   RETURN
++WRITE(*,*)END SUBROUTINE
++ ENDIF
+   ENDDO
+ END PROGRAM test_kind
+ 
diff --git a/debian/patches/series b/debian/patches/series
index 95f7e47..5aa146f 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,5 @@ mpi.diff
 sscanf.diff
 autotools.diff
 allowthreadsafe.diff
+disabler16check.diff
+

-- 
Hierarchical Data Format 5 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 58a3ab7cc4ea13b2e1202034bd9ca3eb394ed99a
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Mar 3 14:30:12 2011 +0100

Remove dependency on libjpeg62-dev

diff --git a/debian/control b/debian/control
index e57dd82..154d46b 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
 Standards-Version: 3.9.1
@@ -64,7 +64,7 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
-Depends: libhdf5-openmpi-1.8.6 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev, ${misc:Depends}
+Depends: libhdf5-openmpi-1.8.6 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libopenmpi-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -98,7 +98,7 @@ Package: libhdf5-mpich2-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-mpich2-1.8.6 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libmpich21.0-dev, ${misc:Depends}
+Depends: libhdf5-mpich2-1.8.6 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libmpich21.0-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
diff --git a/debian/control.in b/debian/control.in
index c7f3c80..e3b1cca 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
+ libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
 Standards-Version: 3.9.1
@@ -64,7 +64,7 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: @ARCHS@
-Depends: libhdf5-openmpi-@VERSION@ (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev, ${misc:Depends}
+Depends: libhdf5-openmpi-@VERSION@ (= ${binary:Version}), zlib1g-dev, 
libjpeg-dev, libopenmpi-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -98,7 +98,7 @@ Package: libhdf5-mpich2-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-mpich2-@VERSION@ (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libmpich21.0-dev, ${misc:Depends}
+Depends: libhdf5-mpich2-@VERSION@ (= ${binary:Version}), zlib1g-dev, 
libjpeg-dev, libmpich21.0-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc

-- 
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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit bf76afa4efe2f67374900eb2a1aa3730f4ee3362
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Tue Aug 2 18:38:26 2011 +0200

Missing conflicts + replaces + description of the change in the changelog

diff --git a/debian/changelog b/debian/changelog
index 1f9beda..5338d38 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,11 @@
-hdf5 (1.8.7-2) UNRELEASED; urgency=low
+hdf5 (1.8.7-2) experimental; urgency=low
 
   [ Sylvestre Ledru ]
+  * hdf5 packages renamed to use soname versionning. Upstream looks like ready
+to support them correctly. Therefor, here is the changes:
+libhdf5-serial-1.8.7 = libhdf5-serial-7
+libhdf5-openmpi-1.8.7 = libhdf5-openmpi-7
+libhdf5-mpich2-1.8.7 = libhdf5-mpich2-7
   * Support of hurd-i386. Thanks to Pino Toscano for doing the work.
 (Closes: #627896)
   * Drop the useless lam4-dev dependency. Thanks to Pino Toscano  Adam C 
diff --git a/debian/control.in b/debian/control.in
index d3e1e1e..4183b75 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -18,9 +18,10 @@ Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@,
- libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, libhdf5-serial-1.8.6
+ libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, libhdf5-serial-1.8.6,
+ libhdf5-1.8.7, libhdf5-serial-1.8.7
 Provides: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, 
libhdf5-serial-1.8.6
+Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, 
libhdf5-serial-1.8.6, libhdf5-1.8.7, libhdf5-serial-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -50,9 +51,11 @@ Priority: extra
 Architecture: @ARCHS@
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@,
- libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, libhdf5-openmpi-1.8.6
+ libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, libhdf5-openmpi-1.8.6,
+ libhdf5-1.8.7, libhdf5-serial-1.8.7
 Provides: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6
+Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6,
+ libhdf5-1.8.7, libhdf5-serial-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -83,9 +86,11 @@ Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@, 
- libhdf5-1.8.4,  libhdf5-openmpi-1.8.4, libhdf5-1.8.6,  libhdf5-openmpi-1.8.6
+ libhdf5-1.8.4,  libhdf5-openmpi-1.8.4, libhdf5-1.8.6,  libhdf5-openmpi-1.8.6,
+ libhdf5-1.8.7, libhdf5-serial-1.8.7
 Provides: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6
+Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6,
+ libhdf5-1.8.7, libhdf5-serial-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit b15f17434796295c7bc5ce97c456b7918f600917
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Feb 25 10:00:15 2011 +0100

Fixating for source 3.0 and some lintian warnings.

diff --git a/debian/changelog b/debian/changelog
index f40a886..be2b550 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,12 @@
+hdf5 (1.8.4-patch1-3) unstable; urgency=low
+
+  * Moved repository to git and changed Vcs-* fields.
+  * Now using source format 3.0 and removed quilt build-dep.
+  * Policy bumped to 3.9.1, no changes required.
+  * Added ${misc:Depends} to all binary package due to dh use.
+
+ -- Francesco Paolo Lovergine fran...@debian.org  Fri, 25 Feb 2011 09:47:32 
+0100
+
 hdf5 (1.8.4-patch1-2) unstable; urgency=low
 
   [ Adam C. Powell, IV ]
diff --git a/debian/control b/debian/control
index 2eefaed..ecfc391 100644
--- a/debian/control
+++ b/debian/control
@@ -3,19 +3,19 @@ Section: science
 Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org
-Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2), quilt,
+Build-Depends: libmpich1.0-dev (= 1.2.7-1), zlib1g-dev, lam4-dev (= 
7.1.1-3.2),
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg62-dev | libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
-Standards-Version: 3.8.4
+Standards-Version: 3.9.1
 Homepage: http://hdfgroup.org/HDF5/
-Vcs-Browser: http://svn.debian.org/viewsvn/pkg-grass/packages/hdf5/trunk/
-Vcs-Svn: svn://svn.debian.org/svn/pkg-grass/packages/hdf5/trunk
+Vcs-Browser: http://git.debian.org/?p=pkg-grass/hdf5.git
+Vcs-Git: git://git.debian.org/git/pkg-grass/hdf5.git
 
 Package: libhdf5-serial-1.8.4
 Section: libs
 Architecture: any
-Depends: ${shlibs:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
@@ -30,7 +30,7 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
 Package: libhdf5-serial-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-1.8.4 (= ${binary:Version}), zlib1g-dev, libjpeg-dev
+Depends: libhdf5-serial-1.8.4 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -46,7 +46,7 @@ Package: libhdf5-lam-1.8.4
 Section: libs
 Priority: extra
 Architecture: any
-Depends: ${shlibs:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
@@ -62,7 +62,7 @@ Package: libhdf5-lam-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-lam-1.8.4 (= ${binary:Version}), zlib1g-dev, libjpeg62-dev, 
lam4-dev
+Depends: libhdf5-lam-1.8.4 (= ${binary:Version}), zlib1g-dev, libjpeg62-dev, 
lam4-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -78,7 +78,7 @@ Package: libhdf5-openmpi-1.8.4
 Section: libs
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
-Depends: ${shlibs:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
@@ -94,7 +94,7 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
-Depends: libhdf5-openmpi-1.8.4 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev
+Depends: libhdf5-openmpi-1.8.4 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -110,7 +110,7 @@ Package: libhdf5-mpich-1.8.4
 Section: libs
 Priority: extra
 Architecture: any
-Depends: ${shlibs:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
 Provides: libhdf5-1.8.4, libhdf5-1.8
 Replaces: libhdf5-1.8.3
@@ -127,7 +127,7 @@ Package: libhdf5-mpich-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-mpich-1.8.4 (= ${binary:Version}), zlib1g-dev, libjpeg62-dev, 
libmpich1.0-dev
+Depends: libhdf5-mpich-1.8.4 (= ${binary:Version}), zlib1g-dev, libjpeg62-dev, 
libmpich1.0-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -144,7 +144,7 @@ Package: libhdf5-mpi-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: ${hdf5-mpi-dev}, mpi-default-dev
+Depends: ${hdf5-mpi-dev}, mpi-default-dev, ${misc:Depends}
 Description: Hierarchical Data Format 5 (HDF5) - development files - MPICH 
version

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit fbbfb75129c078f07a4d9976c144fd41b2f45d4f
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 17:46:27 2011 +0200

Fix a mistake in the control files

diff --git a/debian/control.in b/debian/control.in
index c8c95f6..be3a666 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -52,7 +52,7 @@ Architecture: @ARCHS@
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@,
  libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, libhdf5-openmpi-1.8.6,
- libhdf5-1.8.7, libhdf5-serial-1.8.7
+ libhdf5-1.8.7, libhdf5-openmpi-1.8.7
 Provides: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@
 Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6,
  libhdf5-1.8.7, libhdf5-openmpi-1.8.7

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 57e30e1a7634bf93522b0ad854dfa90a9a1270c4
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 1 09:48:32 2011 +0200

openmpi is now working under arm

diff --git a/debian/changelog b/debian/changelog
index b8e01bc..3a5d863 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,11 @@
-hdf5 (1.8.7-2) unstable; urgency=low
+hdf5 (1.8.7-2) UNRELEASED; urgency=low
 
   [ Sylvestre Ledru ]
   * Support of hurd-i386. Thanks to Pino Toscano for doing the work.
 (Closes: #627896)
   * Drop the useless lam4-dev dependency. Thanks to Pino Toscano.
 (Closes: #604714)
+  * armel/arm added to the archs of libhdf5-openmpi-dev (Closes: #636185)
 
   [ Francesco Paolo Lovergine ]
   * Ready for unstable.
diff --git a/debian/control b/debian/control
index 1d71caa..fd01aa0 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,7 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org,
  Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev,
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
+ libopenmpi-dev [!hppa !mips !mipsel !s390 !sh4 !m68k], libjpeg-dev, debhelper 
( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
 Standards-Version: 3.9.2
@@ -47,7 +47,7 @@ Description: Hierarchical Data Format 5 (HDF5) - development 
files - serial vers
 Package: libhdf5-openmpi-1.8.7
 Section: libs
 Priority: extra
-Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
+Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 
hurd-i386
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-1.8.7, libhdf5-1.8,
  libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, libhdf5-openmpi-1.8.6
@@ -64,7 +64,7 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - OpenMPI version
 Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
-Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
+Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 
hurd-i386
 Depends: libhdf5-openmpi-1.8.7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libopenmpi-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
diff --git a/debian/control.in b/debian/control.in
index bb83af7..9a88e75 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -5,7 +5,7 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org,
  Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev,
- libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
+ libopenmpi-dev [!hppa !mips !mipsel !s390 !sh4 !m68k], libjpeg-dev, debhelper 
( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
 Standards-Version: 3.9.2

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 69d8987d05549c4269e404a12439defaa4893d1a
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 22:49:07 2011 +0200

Provides: libhdf5-dev removed

diff --git a/debian/control b/debian/control
index 6e0260b..34a2e25 100644
--- a/debian/control
+++ b/debian/control
@@ -35,7 +35,6 @@ Section: libdevel
 Architecture: any
 Depends: libhdf5-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
 Conflicts: libhdf5-dev
-Provides: libhdf5-dev
 Suggests: libhdf5-doc
 Description: Hierarchical Data Format 5 (HDF5) - development files - serial 
version
  HDF5 is a file format and library for storing scientific data. 
diff --git a/debian/control.in b/debian/control.in
index be3a666..4b358c3 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -35,7 +35,6 @@ Section: libdevel
 Architecture: any
 Depends: libhdf5-@SONAME@ (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
 Conflicts: libhdf5-dev
-Provides: libhdf5-dev
 Suggests: libhdf5-doc
 Description: Hierarchical Data Format 5 (HDF5) - development files - serial 
version
  HDF5 is a file format and library for storing scientific data. 

-- 
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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit ca6492c8a53386977e7820c8652491428f8555d3
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 21:52:41 2011 +0200

mipsel symbols

diff --git a/debian/changelog b/debian/changelog
index ae593ab..22a3935 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
 hdf5 (1.8.7-2~exp3) experimental; urgency=low
 
-  * kfreebsd-amd64, s390  powerpc symbols
+  * kfreebsd-amd64, s390, mipsel  powerpc symbols
 
  -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 20:25:49 +0200
 
diff --git a/debian/libhdf5-mpich2-7.symbols b/debian/libhdf5-mpich2-7.symbols
index 64a44ae..203a949 100644
--- a/debian/libhdf5-mpich2-7.symbols
+++ b/debian/libhdf5-mpich2-7.symbols
@@ -2121,7 +2121,7 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5T_conv_ullong_double@Base 1.8.7
  H5T_conv_ullong_float@Base 1.8.7
  H5T_conv_ullong_int@Base 1.8.7
- H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!mipsel)H5T_conv_ullong_ldouble@Base 1.8.7
  H5T_conv_ullong_llong@Base 1.8.7
  H5T_conv_ullong_long@Base 1.8.7
  H5T_conv_ullong_schar@Base 1.8.7

-- 
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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 7a2ba170a4a0b0ba6bb63f844d52a457f9f4abb9
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Tue Aug 9 13:32:33 2011 +0200

* Update of the powerpc symbols

diff --git a/debian/changelog b/debian/changelog
index fe847c2..821eb1a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.7-2~exp5) experimental; urgency=low
+
+  * Update of the powerpc symbols
+
+ -- Sylvestre Ledru sylves...@debian.org  Tue, 09 Aug 2011 13:32:05 +0200
+
 hdf5 (1.8.7-2~exp4) experimental; urgency=low
 
   * Fix a mistake in the symbol declaration
diff --git a/debian/libhdf5-mpich2-7.symbols b/debian/libhdf5-mpich2-7.symbols
index f56f9aa..675b3f9 100644
--- a/debian/libhdf5-mpich2-7.symbols
+++ b/debian/libhdf5-mpich2-7.symbols
@@ -2030,19 +2030,19 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5T_conv_ldouble_double@Base 1.8.7
  H5T_conv_ldouble_float@Base 1.8.7
  H5T_conv_ldouble_int@Base 1.8.7
- H5T_conv_ldouble_llong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
  H5T_conv_ldouble_long@Base 1.8.7
  H5T_conv_ldouble_schar@Base 1.8.7
  H5T_conv_ldouble_short@Base 1.8.7
  H5T_conv_ldouble_uchar@Base 1.8.7
  H5T_conv_ldouble_uint@Base 1.8.7
- H5T_conv_ldouble_ullong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_ullong@Base 1.8.7
  H5T_conv_ldouble_ulong@Base 1.8.7
  H5T_conv_ldouble_ushort@Base 1.8.7
  H5T_conv_llong_double@Base 1.8.7
  H5T_conv_llong_float@Base 1.8.7
  H5T_conv_llong_int@Base 1.8.7
- H5T_conv_llong_ldouble@Base 1.8.7
+ (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
  H5T_conv_llong_long@Base 1.8.7
  H5T_conv_llong_schar@Base 1.8.7
  H5T_conv_llong_short@Base 1.8.7
@@ -2121,7 +2121,7 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5T_conv_ullong_double@Base 1.8.7
  H5T_conv_ullong_float@Base 1.8.7
  H5T_conv_ullong_int@Base 1.8.7
- (arch=!mipsel !armel)H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!mipsel !armel !powerpc)H5T_conv_ullong_ldouble@Base 1.8.7
  H5T_conv_ullong_llong@Base 1.8.7
  H5T_conv_ullong_long@Base 1.8.7
  H5T_conv_ullong_schar@Base 1.8.7

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 790cff3c1eac40b28dc7d7595514f04e18b5be18
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 17:31:52 2011 +0200

Add missing manpages + fix some issues

diff --git a/debian/man/h5copy.1 b/debian/man/h5copy.1
new file mode 100644
index 000..42884a2
--- /dev/null
+++ b/debian/man/h5copy.1
@@ -0,0 +1,92 @@
+.\ DO NOT MODIFY THIS FILE!  It was generated by help2man 1.39.4.
+.TH H5COPY: 1 August 2011 h5copy: Version 1.8.7 User Commands
+.SH NAME
+h5copy: \- Copies HDF5 objects from a file to a new file
+.SH DESCRIPTION
+usage: h5copy [OPTIONS] [OBJECTS...]
+.IP
+OBJECTS
+.TP
+\fB\-i\fR, \fB\-\-input\fR
+input file name
+.TP
+\fB\-o\fR, \fB\-\-output\fR
+output file name
+.TP
+\fB\-s\fR, \fB\-\-source\fR
+source object name
+.TP
+\fB\-d\fR, \fB\-\-destination\fR
+destination object name
+.IP
+OPTIONS
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+Print a usage message and exit
+.TP
+\fB\-p\fR, \fB\-\-parents\fR
+No error if existing, make parent groups as needed
+.TP
+\fB\-v\fR, \fB\-\-verbose\fR
+Print information about OBJECTS and OPTIONS
+.TP
+\fB\-V\fR, \fB\-\-version\fR
+Print version number and exit
+.TP
+\fB\-f\fR, \fB\-\-flag\fR
+Flag type
+.IP
+Flag type is one of the following strings:
+.TP
+shallow
+Copy only immediate members for groups
+.TP
+soft
+Expand soft links into new objects
+.TP
+ext
+Expand external links into new objects
+.TP
+ref
+Copy references and any referenced objects, i.e., objects
+that the references point to.
+.IP
+Referenced objects are copied in addition to the objects
+.IP
+specified on the command line and reference datasets are
+populated with correct reference values. Copies of referenced
+datasets outside the copy range specified on the command line
+will normally have a different name from the original.
+.IP
+(Default:Without this option, reference value(s) in any
+.IP
+reference datasets are set to NULL and referenced objects are
+not copied unless they are otherwise within the copy range
+specified on the command line.)
+.TP
+noattr
+Copy object without copying attributes
+.TP
+allflags
+Switches all flags from the default to the non\-default setting
+.IP
+These flag types correspond to the following API symbols
+.IP
+H5O_COPY_SHALLOW_HIERARCHY_FLAG
+H5O_COPY_EXPAND_SOFT_LINK_FLAG
+H5O_COPY_EXPAND_EXT_LINK_FLAG
+H5O_COPY_EXPAND_REFERENCE_FLAG
+H5O_COPY_WITHOUT_ATTR_FLAG
+H5O_COPY_ALL
+.SH SEE ALSO
+The full documentation for
+.B h5copy:
+is maintained as a Texinfo manual.  If the
+.B info
+and
+.B h5copy:
+programs are properly installed at your site, the command
+.IP
+.B info h5copy:
+.PP
+should give you access to the complete manual.
diff --git a/debian/man/h5diff.1 b/debian/man/h5diff.1
index be80591..66fbca8 100644
--- a/debian/man/h5diff.1
+++ b/debian/man/h5diff.1
@@ -1,6 +1,6 @@
 .TH h5diff 1
 .SH NAME
-h5diff (Beta version) \- Compares two HDF5 files and reports the differences.
+h5diff \- Compares two HDF5 files and reports the differences.
 .SH SYNOPSIS
 h5diff file1 file2 [OPTIONS] [object1 [object2 ] ] 
 .SH DESCRIPTION
diff --git a/debian/man/h5fc.1 b/debian/man/h5fc.1
new file mode 100644
index 000..da0b95c
--- /dev/null
+++ b/debian/man/h5fc.1
@@ -0,0 +1,90 @@
+.\ DO NOT MODIFY THIS FILE!  It was generated by help2man 1.39.4.
+.TH FORTRAN 1 August 2011 Fortran (Debian 4.6.1-4) 4.6.1 User Commands
+.SH NAME
+Fortran \- Reports statistics regarding an HDF5 file and the objects in the 
file.
+.SH DESCRIPTION
+usage: h5fc [OPTIONS] compile line
+.IP
+OPTIONS:
+.TP
+\fB\-help\fR
+This help message.
+.TP
+\fB\-echo\fR
+Show all the shell commands executed
+.TP
+\fB\-prefix\fR=\fIDIR\fR
+Prefix directory to find HDF5 lib/ and include/
+.IP
+subdirectories [default: /usr]
+.TP
+\fB\-show\fR
+Show the commands without executing them
+.TP
+\fB\-showconfig\fR
+Show the HDF5 library configuration summary
+.TP
+\fB\-shlib\fR
+Compile with shared HDF5 libraries
+.TP
+\fB\-noshlib\fR
+Compile with static HDF5 libraries [default]
+.TP
+compile line
+\- the normal compile line options for your compiler.
+.IP
+h5fc uses the same compiler you used to compile
+HDF5. Check with your compiler's man pages for more
+information on which options are needed.
+.IP
+You can override the compiler and linker to compile your program by
+setting the following environment variables accordingly:
+.TP
+HDF5_FC
+\-  use a different Fortran 90 or 95 compiler
+.TP
+HDF5_FLINKER
+\-  use a different linker
+.TP
+HDF5_USE_SHLIB=[yes|no]
+\-  use shared or static version of the HDF5 library
+.IP
+[default: no]
+.IP
+You can also add or change paths and flags to the compile line using
+the following environment varibles or by assigning them to their counterparts
+in the 'Things You Can Modify to Override...' section of h5fc
+.TP
+Variable
+Current value to be replaced
+.TP
+HDF5_FFLAGS
+
+.TP
+HDF5_LDFLAGS
+
+.TP
+HDF5_LIBS
+
+.IP
+Note that adding library paths to HDF5_LDFLAGS where another hdf5 version
+is 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 8a6383d4d176d186953421109744654d7d961dd0
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Aug 4 16:54:58 2011 +0200

Rename libhdf5-serial-* to libhdf5

diff --git a/debian/changelog b/debian/changelog
index edfd959..9865252 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,10 @@
 hdf5 (1.8.7-2~exp1) experimental; urgency=low
 
+  * Rename libhdf5-serial-* to libhdf5 to avoid confusion and to highlight
+which one is the default version (Closes: #566541)
   * hdf5 packages renamed to use soname versionning. Upstream looks like ready
 to support them correctly. Therefor, here is the changes:
-libhdf5-serial-1.8.7 = libhdf5-serial-7
+libhdf5-serial-1.8.7 = libhdf5-7
 libhdf5-openmpi-1.8.7 = libhdf5-openmpi-7
 libhdf5-mpich2-1.8.7 = libhdf5-mpich2-7
   * C, C++ and Fortran symbol files introduced (mpich2, openmpi and serial).
diff --git a/debian/control b/debian/control
index a10658d..511a705 100644
--- a/debian/control
+++ b/debian/control
@@ -13,7 +13,7 @@ Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://git.debian.org/?p=pkg-grass/hdf5.git
 Vcs-Git: git://git.debian.org/git/pkg-grass/hdf5.git
 
-Package: libhdf5-serial-7
+Package: libhdf5-7
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
@@ -30,10 +30,10 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
  .
  This package contains runtime files for serial platforms.
 
-Package: libhdf5-serial-dev
+Package: libhdf5-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
+Depends: libhdf5-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -52,10 +52,10 @@ Architecture: alpha amd64 i386 ia64 powerpc sparc 
kfreebsd-i386 kfreebsd-amd64 h
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-7, libhdf5-1.8,
  libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, libhdf5-openmpi-1.8.6,
- libhdf5-1.8.7, libhdf5-serial-1.8.7
+ libhdf5-1.8.7, libhdf5-openmpi-1.8.7
 Provides: libhdf5-7, libhdf5-1.8
 Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6,
- libhdf5-1.8.7, libhdf5-serial-1.8.7
+ libhdf5-1.8.7, libhdf5-openmpi-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -86,11 +86,11 @@ Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-7, libhdf5-1.8, 
- libhdf5-1.8.4,  libhdf5-openmpi-1.8.4, libhdf5-1.8.6,  libhdf5-openmpi-1.8.6,
- libhdf5-1.8.7, libhdf5-serial-1.8.7
+ libhdf5-1.8.4,  libhdf5-mpich2-1.8.4, libhdf5-1.8.6,  libhdf5-mpich2-1.8.6,
+ libhdf5-1.8.7, libhdf5-mpich2-1.8.7
 Provides: libhdf5-7, libhdf5-1.8
-Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6,
- libhdf5-1.8.7, libhdf5-serial-1.8.7
+Replaces: libhdf5-1.8.4, libhdf5-mpich2-1.8.4, libhdf5-1.8.6, 
libhdf5-mpich2-1.8.6,
+ libhdf5-1.8.7, libhdf5-mpich2-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
diff --git a/debian/control.in b/debian/control.in
index 4183b75..38e8c4d 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -13,14 +13,13 @@ Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://git.debian.org/?p=pkg-grass/hdf5.git
 Vcs-Git: git://git.debian.org/git/pkg-grass/hdf5.git
 
-Package: libhdf5-serial-@SONAME@
+Package: libhdf5-@SONAME@
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@,
  libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, libhdf5-serial-1.8.6,
  libhdf5-1.8.7, libhdf5-serial-1.8.7
-Provides: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@
 Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, 
libhdf5-serial-1.8.6, libhdf5-1.8.7, libhdf5-serial-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
@@ -30,10 +29,10 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
  .
  This package contains runtime files for serial platforms.
 
-Package: libhdf5-serial-dev
+Package: libhdf5-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-@SONAME@ (= ${binary:Version}), zlib1g-dev, 
libjpeg-dev, ${misc:Depends}
+Depends: libhdf5-@SONAME@ (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -55,7 +54,7 @@ Conflicts: libhdf5-@SONAME@, 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit cd5dc94d0cfe4fbec9851fb30b6d483c8ba98e1a
Merge: 1226642a1795e32270c53d02510973da37ad52a0 
7a2ba170a4a0b0ba6bb63f844d52a457f9f4abb9
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Aug 10 12:21:51 2011 +0200

Merge branch 'master' of git+ssh://git.debian.org/git/pkg-grass/hdf5


-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 54a7425b77284f644dc37b81a9f70793feb443f3
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Aug 11 18:09:12 2011 +0200

debian/rules: Some lam old commands removed

diff --git a/debian/rules b/debian/rules
index 7fc6f75..28f1a92 100755
--- a/debian/rules
+++ b/debian/rules
@@ -22,7 +22,7 @@ DEB_HOST_GNU_TYPE   ?= $(shell dpkg-architecture 
-qDEB_HOST_GNU_TYPE)
 DEB_BUILD_GNU_TYPE  ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
 DEB_BUILD_ARCH  ?= $(shell dpkg-architecture -qDEB_BUILD_ARCH)
 
-DEFAULT_MPI=$(shell dpkg -s mpi-default-dev | grep Depends | sed s/Depends: 
lib// | sed s/Depends: // | sed s/-dev// | sed s/lam4/lam/)
+DEFAULT_MPI=$(shell dpkg -s mpi-default-dev | grep Depends | sed s/Depends: 
lib// | sed s/Depends: // | sed s/-dev//)
 
 # To be used if binary packages were buildable on any arch
 #ARCH_FLAG=-a
@@ -92,19 +92,17 @@ CONFIGURE_FLAGS = --prefix=/usr --host=$(DEB_HOST_GNU_TYPE) 
\
  --disable-sharedlib-rpath --with-zlib 
--with-default-api-version=v18
 SERIAL_ONLY_FLAGS = --enable-cxx --enable-fortran --enable-threadsafe 
 
-configure: configure-stamp-debian configure-stamp configure-stamp-lam \
+configure: configure-stamp-debian configure-stamp \
   $(configure_stamp_openmpi) configure-stamp-mpich2
 
 configure-stamp-debian: debian/control.in
cd debian  for i in *_devlib; do j=`basename $$i _devlib`; \
ln -sf $$i $(package)-dev.$$j ; \
-   ln -sf $$i $(package)-lam-dev.$$j ; \
ln -sf $$i $(package)-openmpi-dev.$$j ; \
ln -sf $$i $(package)-mpich2-dev.$$j ; \
done
cd debian  for i in *_shlib; do j=`basename $$i _shlib`; \
ln -sf $$i $(serpack).$$j ; \
-   ln -sf $$i $(lampack).$$j ; \
ln -sf $$i $(openmpipack).$$j ; \
ln -sf $$i $(mpich2pack).$$j ; \
done

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 49e3cea096cd59834a7b3a1f138c18606ced69ef
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 16:51:45 2011 +0200

Update of the symbol with amd64

diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 383cd6c..339c8ea 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2536,7 +2536,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11getEDCCheckEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
- _ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ (arch=!amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
  (arch=!i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
@@ -2640,20 +2640,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57IntTypeD2Ev@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
- _ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
- _ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ (arch=!amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
- _ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
- _ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ (arch=!amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
@@ -2678,13 +2678,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
- _ZN2H58CompTypeC1Ej@Base 1.8.7
+ (arch=!amd64)_ZN2H58CompTypeC1Ej@Base 1.8.7
  (arch=!i386)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
- _ZN2H58CompTypeC2Ej@Base 1.8.7
+ (arch=!amd64)_ZN2H58CompTypeC2Ej@Base 1.8.7
  (arch=!i386)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
@@ -2699,7 +2699,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType6commitERNS_8H5ObjectERKSs@Base 1.8.7
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
- _ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
+ (arch=!amd64)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
  (arch=!i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2707,7 +2707,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1ERNS_9AttributeEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
- _ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
+ (arch=!amd64)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
  (arch=!i386)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2723,14 +2723,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58EnumTypeC1ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC1ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC1Ei@Base 1.8.7
- _ZN2H58EnumTypeC1Ej@Base 1.8.7
+ (arch=!amd64)_ZN2H58EnumTypeC1Ej@Base 1.8.7
  (arch=!i386)_ZN2H58EnumTypeC1Em@Base 1.8.7
  _ZN2H58EnumTypeC1Ev@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC2Ei@Base 1.8.7
- _ZN2H58EnumTypeC2Ej@Base 1.8.7
+ (arch=!amd64)_ZN2H58EnumTypeC2Ej@Base 1.8.7
  (arch=!i386)_ZN2H58EnumTypeC2Em@Base 1.8.7
  _ZN2H58EnumTypeC2Ev@Base 1.8.7
  _ZN2H58EnumTypeD0Ev@Base 1.8.7
@@ -3009,22 +3009,22 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZNK2H515FileAccPropList15getSieveBufSizeEv@Base 1.8.7
  _ZNK2H515FileAccPropList15setFamilyOffsetEy@Base 1.8.7
  _ZNK2H515FileAccPropList15setGcReferencesEj@Base 1.8.7
- _ZNK2H515FileAccPropList15setSieveBufSizeEj@Base 1.8.7
+ (arch=!amd64)_ZNK2H515FileAccPropList15setSieveBufSizeEj@Base 1.8.7
  (arch=!i386)_ZNK2H515FileAccPropList15setSieveBufSizeEm@Base 1.8.7
  _ZNK2H515FileAccPropList16getMetaBlockSizeEv@Base 1.8.7
  _ZNK2H515FileAccPropList16setMetaBlockSizeERy@Base 1.8.7
- _ZNK2H515FileAccPropList6setLogEPKcjj@Base 1.8.7
+ (arch=!amd64)_ZNK2H515FileAccPropList6setLogEPKcjj@Base 1.8.7
  

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit a74b7c2ea2fba5eb30d3ccd58f5de13f26418e7f
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 20:44:50 2011 +0200

powerpc symbols

diff --git a/debian/changelog b/debian/changelog
index 07dc214..ae593ab 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
 hdf5 (1.8.7-2~exp3) experimental; urgency=low
 
-  * kfreebsd-amd64, s390 symbols
+  * kfreebsd-amd64, s390  powerpc symbols
 
  -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 20:25:49 +0200
 
diff --git a/debian/libhdf5-openmpi-7.symbols b/debian/libhdf5-openmpi-7.symbols
index 1b37a9c..c838432 100644
--- a/debian/libhdf5-openmpi-7.symbols
+++ b/debian/libhdf5-openmpi-7.symbols
@@ -2030,19 +2030,19 @@ libhdf5.so.7 libhdf5-openmpi-7 #MINVER#
  H5T_conv_ldouble_double@Base 1.8.7
  H5T_conv_ldouble_float@Base 1.8.7
  H5T_conv_ldouble_int@Base 1.8.7
- H5T_conv_ldouble_llong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
  H5T_conv_ldouble_long@Base 1.8.7
  H5T_conv_ldouble_schar@Base 1.8.7
  H5T_conv_ldouble_short@Base 1.8.7
  H5T_conv_ldouble_uchar@Base 1.8.7
  H5T_conv_ldouble_uint@Base 1.8.7
- H5T_conv_ldouble_ullong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_ullong@Base 1.8.7
  H5T_conv_ldouble_ulong@Base 1.8.7
  H5T_conv_ldouble_ushort@Base 1.8.7
  H5T_conv_llong_double@Base 1.8.7
  H5T_conv_llong_float@Base 1.8.7
  H5T_conv_llong_int@Base 1.8.7
- H5T_conv_llong_ldouble@Base 1.8.7
+ (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
  H5T_conv_llong_long@Base 1.8.7
  H5T_conv_llong_schar@Base 1.8.7
  H5T_conv_llong_short@Base 1.8.7
@@ -2121,7 +2121,7 @@ libhdf5.so.7 libhdf5-openmpi-7 #MINVER#
  H5T_conv_ullong_double@Base 1.8.7
  H5T_conv_ullong_float@Base 1.8.7
  H5T_conv_ullong_int@Base 1.8.7
- H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ullong_ldouble@Base 1.8.7
  H5T_conv_ullong_llong@Base 1.8.7
  H5T_conv_ullong_long@Base 1.8.7
  H5T_conv_ullong_schar@Base 1.8.7

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 0750d2cde5978a1a2bf3e777abf1ac3a2aab32f2
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 13:00:47 2011 +0200

Update of the symbol list

diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 19c9aa9..f04e443 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -1991,19 +1991,19 @@ libhdf5.so.7 libhdf5-7 #MINVER#
  H5T_conv_ldouble_double@Base 1.8.7
  H5T_conv_ldouble_float@Base 1.8.7
  H5T_conv_ldouble_int@Base 1.8.7
- H5T_conv_ldouble_llong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
  H5T_conv_ldouble_long@Base 1.8.7
  H5T_conv_ldouble_schar@Base 1.8.7
  H5T_conv_ldouble_short@Base 1.8.7
  H5T_conv_ldouble_uchar@Base 1.8.7
  H5T_conv_ldouble_uint@Base 1.8.7
- H5T_conv_ldouble_ullong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_ullong@Base 1.8.7
  H5T_conv_ldouble_ulong@Base 1.8.7
  H5T_conv_ldouble_ushort@Base 1.8.7
  H5T_conv_llong_double@Base 1.8.7
  H5T_conv_llong_float@Base 1.8.7
  H5T_conv_llong_int@Base 1.8.7
- H5T_conv_llong_ldouble@Base 1.8.7
+ (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
  H5T_conv_llong_long@Base 1.8.7
  H5T_conv_llong_schar@Base 1.8.7
  H5T_conv_llong_short@Base 1.8.7
@@ -2083,6 +2083,7 @@ libhdf5.so.7 libhdf5-7 #MINVER#
  H5T_conv_ullong_float@Base 1.8.7
  H5T_conv_ullong_int@Base 1.8.7
  H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!armel !power !mipsel)H5T_conv_ullong_ldouble@Base 1.8.7
  H5T_conv_ullong_llong@Base 1.8.7
  H5T_conv_ullong_long@Base 1.8.7
  H5T_conv_ullong_schar@Base 1.8.7
@@ -2535,7 +2536,8 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11getEDCCheckEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
- _ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ (arch=amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ _ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7-2~exp1
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2638,17 +2640,21 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57IntTypeD2Ev@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
- _ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
+ _ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
- _ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ (arch=amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ _ZN2H57StrTypeC1EiRKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
- _ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
+ _ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
- _ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ (arch=amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ _ZN2H57StrTypeC2EiRKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  _ZN2H57StrTypeD1Ev@Base 1.8.7
@@ -2672,12 +2678,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
- _ZN2H58CompTypeC1Ej@Base 1.8.7
+ (arch=amd64)_ZN2H58CompTypeC1Ej@Base 1.8.7
+ _ZN2H58CompTypeC1Em@Base 1.8.7-2~exp1
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
- _ZN2H58CompTypeC2Ej@Base 1.8.7
+ (arch=amd64)_ZN2H58CompTypeC2Ej@Base 1.8.7
+ _ZN2H58CompTypeC2Em@Base 1.8.7-2~exp1
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
  _ZN2H58CompTypeD1Ev@Base 1.8.7
@@ -2691,14 +2699,16 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType6commitERNS_8H5ObjectERKSs@Base 1.8.7
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
- _ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
+ (arch=amd64)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
+ _ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7-2~exp1
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_9AttributeEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
- _ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
+ (arch=amd64)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
+ _ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7-2~exp1
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2713,13 +2723,15 @@ libhdf5_cpp.so.7 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 9786ff4de8608d0c2ade81038b0f95112d2398ea
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sun Aug 21 09:49:49 2011 +0200

  * New package hdf5-helpers introduced. Contains now h5cc, h5c++  h5fc.
All hdf5 *-dev now depends on it (Closes: #629157, #637749)
(LP: #770347)

diff --git a/debian/changelog b/debian/changelog
index d661113..5c483f7 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,7 +3,8 @@ hdf5 (1.8.7-2~exp7) experimental; urgency=low
   * Fix a mistake in the powerpc symbol file
   * mipsel and hurd-i386 symbols
   * s390x support. Thanks to Aurelien Jarno (Closes: #638363)
-  * h5cc, h5c++  h5fc moved to the dev packages (Closes: #629157, #637749)
+  * New package hdf5-helpers introduced. Contains now h5cc, h5c++  h5fc.
+All hdf5 *-dev now depends on it (Closes: #629157, #637749)
 (LP: #770347)
 
  -- Sylvestre Ledru sylves...@debian.org  Fri, 12 Aug 2011 15:19:01 +0200
diff --git a/debian/control b/debian/control
index 237f0a5..5d03349 100644
--- a/debian/control
+++ b/debian/control
@@ -35,7 +35,7 @@ Section: debug
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends},
- libhdf5-7 (= ${binary:Version}),
+ libhdf5-7 (= ${binary:Version})
 Description: Hierarchical Data Format 5 (HDF5) - Debug package
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -47,7 +47,8 @@ Description: Hierarchical Data Format 5 (HDF5) - Debug package
 Package: libhdf5-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
+Depends: libhdf5-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev,
+ ${misc:Depends}, hdf5-helper
 Conflicts: libhdf5-dev
 Suggests: libhdf5-doc
 Description: Hierarchical Data Format 5 (HDF5) - development files - serial 
version
@@ -81,7 +82,8 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 
hurd-i386
-Depends: libhdf5-openmpi-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libopenmpi-dev, ${misc:Depends}
+Depends: libhdf5-openmpi-7 (= ${binary:Version}), zlib1g-dev,
+ libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helper
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -131,7 +133,8 @@ Package: libhdf5-mpich2-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-mpich2-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libmpich21.0-dev, ${misc:Depends}
+Depends: libhdf5-mpich2-7 (= ${binary:Version}), zlib1g-dev,
+ libjpeg-dev, libmpich21.0-dev, ${misc:Depends}, hdf5-helper
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -184,6 +187,20 @@ Description: Hierarchical Data Format 5 (HDF5) - 
Documentation
  .
  This package contains documentation for HDF5.
 
+Package: hdf5-helper
+Section: science
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Hierarchical Data Format 5 (HDF5) - Helper tools 
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package contains helper tools for HDF5.
+ .
+ These tools were provided by hdf5-tools before version 1.8.7-2.
+
 Package: hdf5-tools
 Section: science
 Architecture: any
diff --git a/debian/control.in b/debian/control.in
index 53244fe..0e74cc2 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -35,7 +35,7 @@ Section: debug
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends},
- libhdf5-@SONAME@ (= ${binary:Version}),
+ libhdf5-@SONAME@ (= ${binary:Version})
 Description: Hierarchical Data Format 5 (HDF5) - Debug package
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -47,7 +47,8 @@ Description: Hierarchical Data Format 5 (HDF5) - Debug package
 Package: libhdf5-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-@SONAME@ (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
+Depends: libhdf5-@SONAME@ (= ${binary:Version}), zlib1g-dev, libjpeg-dev,
+ ${misc:Depends}, hdf5-helper
 Conflicts: libhdf5-dev
 Suggests: libhdf5-doc
 Description: Hierarchical Data Format 5 (HDF5) - development files - serial 
version
@@ -81,7 +82,8 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: @ARCHS@
-Depends: libhdf5-openmpi-@SONAME@ (= ${binary:Version}), zlib1g-dev, 
libjpeg-dev, libopenmpi-dev, ${misc:Depends}
+Depends: libhdf5-openmpi-@SONAME@ (= ${binary:Version}), zlib1g-dev,
+ libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helper
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit e9b57dcd48de0ed4e766e305096d0052877492ae
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sun Aug 21 13:06:43 2011 +0200

manpages at the right place

diff --git a/debian/hdf5-helpers.manpages b/debian/hdf5-helpers.manpages
new file mode 100644
index 000..2fd715a
--- /dev/null
+++ b/debian/hdf5-helpers.manpages
@@ -0,0 +1,4 @@
+debian/man/h5cc.1
+debian/man/h5c++.1
+debian/man/h5fc.1
+
diff --git a/debian/hdf5-tools.manpages b/debian/hdf5-tools.manpages
index 13cdaf4..4fbfda4 100644
--- a/debian/hdf5-tools.manpages
+++ b/debian/hdf5-tools.manpages
@@ -1 +1,18 @@
-debian/man/*.1
+debian/man/h5mkgrp.1
+debian/man/h5copy.1
+debian/man/h52gif.1
+debian/man/h5stat.1
+debian/man/unused
+debian/man/unused/h5fc.1
+debian/man/unused/h5perf.1
+debian/man/h5import.1
+debian/man/h5unjam.1
+debian/man/h5repack.1
+debian/man/h5redeploy.1
+debian/man/h5perf_serial.1
+debian/man/gif2h5.1
+debian/man/h5diff.1
+debian/man/h5ls.1
+debian/man/h5dump.1
+debian/man/h5jam.1
+debian/man/h5repart.1

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 6f254691c2eb0db28d4c3da40111a49582e9a7e2
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sun Aug 21 11:20:02 2011 +0200

Rename the package + rules

diff --git a/debian/hdf5-helper.install b/debian/hdf5-helpers.install
similarity index 100%
rename from debian/hdf5-helper.install
rename to debian/hdf5-helpers.install

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit ff9a4037500f814abc29772d453456cc039e365f
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 20:43:22 2011 +0200

s390

diff --git a/debian/changelog b/debian/changelog
index 70f9c36..07dc214 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
 hdf5 (1.8.7-2~exp3) experimental; urgency=low
 
-  * kfreebsd-amd64 symbols
+  * kfreebsd-amd64, s390 symbols
 
  -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 20:25:49 +0200
 
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index fc11afd..dd27e0d 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2536,7 +2536,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11getEDCCheckEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
- (arch=!amd64 
kfreebsd-amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 
s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
  (arch=!i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
@@ -2640,20 +2640,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57IntTypeD2Ev@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
  (arch=!i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
  (arch=!i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
@@ -2678,13 +2678,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H58CompTypeC1Ej@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
  (arch=!i386)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H58CompTypeC2Ej@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
  (arch=!i386)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
@@ -2699,7 +2699,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType6commitERNS_8H5ObjectERKSs@Base 1.8.7
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
  (arch=!i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2707,7 +2707,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1ERNS_9AttributeEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
  (arch=!i386)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2723,14 +2723,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58EnumTypeC1ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC1ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC1Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H58EnumTypeC1Ej@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58EnumTypeC1Ej@Base 1.8.7
  (arch=!i386)_ZN2H58EnumTypeC1Em@Base 1.8.7
  _ZN2H58EnumTypeC1Ev@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC2Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64)_ZN2H58EnumTypeC2Ej@Base 1.8.7
+ (arch=!amd64 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit bc1c85047d60c3f7cf8d4ea49f38ec371c7d9533
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Tue Aug 9 11:10:33 2011 +0200

 * Fix a mistake in the symbol declaration

diff --git a/debian/changelog b/debian/changelog
index dde305a..fe847c2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.7-2~exp4) experimental; urgency=low
+
+  * Fix a mistake in the symbol declaration
+
+ -- Sylvestre Ledru sylves...@debian.org  Tue, 09 Aug 2011 11:10:09 +0200
+
 hdf5 (1.8.7-2~exp3) experimental; urgency=low
 
   * kfreebsd-amd64, kfreebsd-i386, s390, mipsel, armel  powerpc symbols
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 51ab4d9..80a2547 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2536,8 +2536,8 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11getEDCCheckEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 
s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- (arch=!i386 
kfreebsd-i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 
!s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ (arch=!i386 
!kfreebsd-i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2640,21 +2640,21 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57IntTypeD2Ev@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
- (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  _ZN2H57StrTypeD1Ev@Base 1.8.7
@@ -2678,14 +2678,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
- (arch=!i386 kfreebsd-i386)_ZN2H58CompTypeC1Em@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
- (arch=!i386 kfreebsd-i386)_ZN2H58CompTypeC2Em@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
  _ZN2H58CompTypeD1Ev@Base 1.8.7
@@ -2699,16 +2699,16 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType6commitERNS_8H5ObjectERKSs@Base 1.8.7
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
- (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
- (arch=!i386 kfreebsd-i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_9AttributeEPKv10H5R_type_t@Base 1.8.7
  

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit d8e08226f92679359337ee3eeb2c5cbb929f09b4
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri Feb 25 10:55:54 2011 +0100

Control updated regarding the new release

diff --git a/debian/control b/debian/control
index 2fc52aa..01c88ab 100644
--- a/debian/control
+++ b/debian/control
@@ -12,12 +12,12 @@ Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://git.debian.org/?p=pkg-grass/hdf5.git
 Vcs-Git: git://git.debian.org/git/pkg-grass/hdf5.git
 
-Package: libhdf5-serial-1.8.4
+Package: libhdf5-serial-1.8.6
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
-Provides: libhdf5-1.8.4, libhdf5-1.8
+Conflicts: libhdf5-1.8.6, libhdf5-1.8, libhdf5-1.8.3
+Provides: libhdf5-1.8.6, libhdf5-1.8
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
@@ -30,7 +30,7 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
 Package: libhdf5-serial-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-1.8.4 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
+Depends: libhdf5-serial-1.8.6 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -42,13 +42,13 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - serial vers
  .
  This package contains development files for serial platforms.
 
-Package: libhdf5-openmpi-1.8.4
+Package: libhdf5-openmpi-1.8.6
 Section: libs
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
-Provides: libhdf5-1.8.4, libhdf5-1.8
+Conflicts: libhdf5-1.8.6, libhdf5-1.8, libhdf5-1.8.3
+Provides: libhdf5-1.8.6, libhdf5-1.8
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
@@ -62,7 +62,7 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
-Depends: libhdf5-openmpi-1.8.4 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev, ${misc:Depends}
+Depends: libhdf5-openmpi-1.8.6 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libopenmpi-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -74,13 +74,13 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - OpenMPI ver
  .
  This package contains development files for use with OpenMPI.
 
-Package: libhdf5-mpich2-1.8.4
+Package: libhdf5-mpich2-1.8.6
 Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.4, libhdf5-1.8, libhdf5-1.8.3
-Provides: libhdf5-1.8.4, libhdf5-1.8
+Conflicts: libhdf5-1.8.6, libhdf5-1.8, libhdf5-1.8.3
+Provides: libhdf5-1.8.6, libhdf5-1.8
 Replaces: libhdf5-1.8.3
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version
  HDF5 is a file format and library for storing scientific data. 
@@ -95,7 +95,7 @@ Package: libhdf5-mpich2-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-mpich2-1.8.4 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libmpich21.0-dev, ${misc:Depends}
+Depends: libhdf5-mpich2-1.8.6 (= ${binary:Version}), zlib1g-dev, 
libjpeg62-dev, libmpich21.0-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 995a6d24b4575fac82aaf8229068a0183808af70
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Aug 4 15:01:36 2011 +0200

Allez, let's go. trying to manage also symbols of c++

diff --git a/debian/changelog b/debian/changelog
index 5338d38..edfd959 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,11 +1,11 @@
-hdf5 (1.8.7-2) experimental; urgency=low
+hdf5 (1.8.7-2~exp1) experimental; urgency=low
 
-  [ Sylvestre Ledru ]
   * hdf5 packages renamed to use soname versionning. Upstream looks like ready
 to support them correctly. Therefor, here is the changes:
 libhdf5-serial-1.8.7 = libhdf5-serial-7
 libhdf5-openmpi-1.8.7 = libhdf5-openmpi-7
 libhdf5-mpich2-1.8.7 = libhdf5-mpich2-7
+  * C, C++ and Fortran symbol files introduced (mpich2, openmpi and serial).
   * Support of hurd-i386. Thanks to Pino Toscano for doing the work.
 (Closes: #627896)
   * Drop the useless lam4-dev dependency. Thanks to Pino Toscano  Adam C 
@@ -13,10 +13,7 @@ hdf5 (1.8.7-2) experimental; urgency=low
   * armel/arm added to the archs of libhdf5-openmpi-dev (Closes: #636185)
   * .la file are no longer shipped
 
-  [ Francesco Paolo Lovergine ]
-  * Ready for unstable.
-
- -- Francesco Paolo Lovergine fran...@debian.org  Wed, 27 Jul 2011 13:58:59 
+0200
+ -- Sylvestre Ledru sylves...@debian.org  Thu, 04 Aug 2011 14:06:18 +0200
 
 hdf5 (1.8.7-1) experimental; urgency=low
 
diff --git a/debian/libhdf5-serial-7.symbols b/debian/libhdf5-serial-7.symbols
index feba3c5..321732e 100644
--- a/debian/libhdf5-serial-7.symbols
+++ b/debian/libhdf5-serial-7.symbols
@@ -2398,6 +2398,1064 @@ libhdf5.so.7 libhdf5-serial-7 #MINVER#
  HDsrand@Base 1.8.7
  HDstrtoll@Base 1.8.7
  epoch_marker_class@Base 1.8.7
+libhdf5_cpp.so.7 libhdf5-serial-7 #MINVER#
+ _ZN2H510AbstractDsC1ERKS0_@Base 1.8.7
+ _ZN2H510AbstractDsC1Ei@Base 1.8.7
+ _ZN2H510AbstractDsC1Ev@Base 1.8.7
+ _ZN2H510AbstractDsC2ERKS0_@Base 1.8.7
+ _ZN2H510AbstractDsC2Ei@Base 1.8.7
+ _ZN2H510AbstractDsC2Ev@Base 1.8.7
+ _ZN2H510AbstractDsD0Ev@Base 1.8.7
+ _ZN2H510AbstractDsD1Ev@Base 1.8.7
+ _ZN2H510AbstractDsD2Ev@Base 1.8.7
+ _ZN2H510VarLenTypeC1EPKNS_8DataTypeE@Base 1.8.7
+ _ZN2H510VarLenTypeC1ERKS0_@Base 1.8.7
+ _ZN2H510VarLenTypeC1Ei@Base 1.8.7
+ _ZN2H510VarLenTypeC1Ev@Base 1.8.7
+ _ZN2H510VarLenTypeC2EPKNS_8DataTypeE@Base 1.8.7
+ _ZN2H510VarLenTypeC2ERKS0_@Base 1.8.7
+ _ZN2H510VarLenTypeC2Ei@Base 1.8.7
+ _ZN2H510VarLenTypeC2Ev@Base 1.8.7
+ _ZN2H510VarLenTypeD0Ev@Base 1.8.7
+ _ZN2H510VarLenTypeD1Ev@Base 1.8.7
+ _ZN2H510VarLenTypeD2Ev@Base 1.8.7
+ _ZN2H511IdComponent10p_valid_idEi@Base 1.8.7
+ _ZN2H511IdComponent13getHDFObjTypeEi@Base 1.8.7
+ _ZN2H511IdComponent5setIdEi@Base 1.8.7
+ _ZN2H511IdComponentC1ERKS0_@Base 1.8.7
+ _ZN2H511IdComponentC1Ei@Base 1.8.7
+ _ZN2H511IdComponentC1Ev@Base 1.8.7
+ _ZN2H511IdComponentC2ERKS0_@Base 1.8.7
+ _ZN2H511IdComponentC2Ei@Base 1.8.7
+ _ZN2H511IdComponentC2Ev@Base 1.8.7
+ _ZN2H511IdComponentD0Ev@Base 1.8.7
+ _ZN2H511IdComponentD1Ev@Base 1.8.7
+ _ZN2H511IdComponentD2Ev@Base 1.8.7
+ _ZN2H511IdComponentaSERKS0_@Base 1.8.7
+ _ZN2H514FileIExceptionC1ERKSsS2_@Base 1.8.7
+ _ZN2H514FileIExceptionC1Ev@Base 1.8.7
+ _ZN2H514FileIExceptionC2ERKSsS2_@Base 1.8.7
+ _ZN2H514FileIExceptionC2Ev@Base 1.8.7
+ _ZN2H514FileIExceptionD0Ev@Base 1.8.7
+ _ZN2H514FileIExceptionD1Ev@Base 1.8.7
+ _ZN2H514FileIExceptionD2Ev@Base 1.8.7
+ _ZN2H515FileAccPropList15getFcloseDegreeEv@Base 1.8.7
+ _ZN2H515FileAccPropList15setFcloseDegreeE18H5F_close_degree_t@Base 1.8.7
+ _ZN2H515FileAccPropList7DEFAULTE@Base 1.8.7
+ _ZN2H515FileAccPropListC1ERKS0_@Base 1.8.7
+ _ZN2H515FileAccPropListC1Ei@Base 1.8.7
+ _ZN2H515FileAccPropListC1Ev@Base 1.8.7
+ _ZN2H515FileAccPropListC2ERKS0_@Base 1.8.7
+ _ZN2H515FileAccPropListC2Ei@Base 1.8.7
+ _ZN2H515FileAccPropListC2Ev@Base 1.8.7
+ _ZN2H515FileAccPropListD0Ev@Base 1.8.7
+ _ZN2H515FileAccPropListD1Ev@Base 1.8.7
+ _ZN2H515FileAccPropListD2Ev@Base 1.8.7
+ _ZN2H515GroupIExceptionC1ERKSsS2_@Base 1.8.7
+ _ZN2H515GroupIExceptionC1Ev@Base 1.8.7
+ _ZN2H515GroupIExceptionC2ERKSsS2_@Base 1.8.7
+ _ZN2H515GroupIExceptionC2Ev@Base 1.8.7
+ _ZN2H515GroupIExceptionD0Ev@Base 1.8.7
+ _ZN2H515GroupIExceptionD1Ev@Base 1.8.7
+ _ZN2H515GroupIExceptionD2Ev@Base 1.8.7
+ _ZN2H517DSetCreatPropList11getFillTimeEv@Base 1.8.7
+ _ZN2H517DSetCreatPropList11setFillTimeE15H5D_fill_time_t@Base 1.8.7
+ _ZN2H517DSetCreatPropList12getAllocTimeEv@Base 1.8.7
+ _ZN2H517DSetCreatPropList12setAllocTimeE16H5D_alloc_time_t@Base 1.8.7
+ _ZN2H517DSetCreatPropList15allFiltersAvailEv@Base 1.8.7
+ _ZN2H517DSetCreatPropList18isFillValueDefinedEv@Base 1.8.7
+ _ZN2H517DSetCreatPropList7DEFAULTE@Base 1.8.7
+ _ZN2H517DSetCreatPropListC1ERKS0_@Base 1.8.7
+ _ZN2H517DSetCreatPropListC1Ei@Base 1.8.7
+ _ZN2H517DSetCreatPropListC1Ev@Base 1.8.7
+ _ZN2H517DSetCreatPropListC2ERKS0_@Base 1.8.7
+ _ZN2H517DSetCreatPropListC2Ei@Base 1.8.7
+ _ZN2H517DSetCreatPropListC2Ev@Base 1.8.7
+ _ZN2H517DSetCreatPropListD0Ev@Base 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 1226642a1795e32270c53d02510973da37ad52a0
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Aug 10 12:21:15 2011 +0200

+s390  powerpc symbols

diff --git a/debian/changelog b/debian/changelog
index 9633e5f..824daed 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
 hdf5 (1.8.7-2~exp5) experimental; urgency=low
 
-  * Armel symbol
+  * Armel, s390  powerpc symbol updates
 
  -- Sylvestre Ledru sylves...@debian.org  Wed, 10 Aug 2011 12:15:24 +0200
 
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 055e7fc..7c27207 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -3039,6 +3039,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZNK2H517DSetCreatPropList10setShuffleEv@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZNK2H517DSetCreatPropList11getExternalEjjPcRxRy@Base 1.8.7
  (arch=!i386 !kfreebsd-i386 !s390 
!armel)_ZNK2H517DSetCreatPropList11getExternalEjmPcRlRy@Base 1.8.7
+ (arch=s390)_ZNK2H517DSetCreatPropList11getExternalEjmPcRxRy@Base 1.8.7
  _ZNK2H517DSetCreatPropList11getNfiltersEv@Base 1.8.7
  (arch=!i386 !kfreebsd-i386 !s390 
!armel)_ZNK2H517DSetCreatPropList11setExternalEPKcly@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZNK2H517DSetCreatPropList11setExternalEPKcxy@Base 1.8.7
@@ -3221,7 +3222,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZNK2H58CommonFG9openGroupEPKc@Base 1.8.7
  _ZNK2H58CommonFG9openGroupERKSs@Base 1.8.7
  _ZNK2H58CompType11getNmembersEv@Base 1.8.7
- (arch=!amd64 
!kfreebsd-amd64)_ZNK2H58CompType12insertMemberERKSsjRKNS_8DataTypeE@Base 1.8.7
+ (arch=!amd64 !kfreebsd-amd64 
!s390)_ZNK2H58CompType12insertMemberERKSsjRKNS_8DataTypeE@Base 1.8.7
  (arch=!i386 !kfreebsd-i386 
!armel)_ZNK2H58CompType12insertMemberERKSsmRKNS_8DataTypeE@Base 1.8.7
  _ZNK2H58CompType13getMemberNameEj@Base 1.8.7
  _ZNK2H58CompType14getMemberClassEj@Base 1.8.7
diff --git a/debian/libhdf5-mpich2-7.symbols b/debian/libhdf5-mpich2-7.symbols
index f56f9aa..675b3f9 100644
--- a/debian/libhdf5-mpich2-7.symbols
+++ b/debian/libhdf5-mpich2-7.symbols
@@ -2030,19 +2030,19 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5T_conv_ldouble_double@Base 1.8.7
  H5T_conv_ldouble_float@Base 1.8.7
  H5T_conv_ldouble_int@Base 1.8.7
- H5T_conv_ldouble_llong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
  H5T_conv_ldouble_long@Base 1.8.7
  H5T_conv_ldouble_schar@Base 1.8.7
  H5T_conv_ldouble_short@Base 1.8.7
  H5T_conv_ldouble_uchar@Base 1.8.7
  H5T_conv_ldouble_uint@Base 1.8.7
- H5T_conv_ldouble_ullong@Base 1.8.7
+ (arch=!powerpc)H5T_conv_ldouble_ullong@Base 1.8.7
  H5T_conv_ldouble_ulong@Base 1.8.7
  H5T_conv_ldouble_ushort@Base 1.8.7
  H5T_conv_llong_double@Base 1.8.7
  H5T_conv_llong_float@Base 1.8.7
  H5T_conv_llong_int@Base 1.8.7
- H5T_conv_llong_ldouble@Base 1.8.7
+ (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
  H5T_conv_llong_long@Base 1.8.7
  H5T_conv_llong_schar@Base 1.8.7
  H5T_conv_llong_short@Base 1.8.7
@@ -2121,7 +2121,7 @@ libhdf5.so.7 libhdf5-mpich2-7 #MINVER#
  H5T_conv_ullong_double@Base 1.8.7
  H5T_conv_ullong_float@Base 1.8.7
  H5T_conv_ullong_int@Base 1.8.7
- (arch=!mipsel !armel)H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!mipsel !armel !powerpc)H5T_conv_ullong_ldouble@Base 1.8.7
  H5T_conv_ullong_llong@Base 1.8.7
  H5T_conv_ullong_long@Base 1.8.7
  H5T_conv_ullong_schar@Base 1.8.7

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 7feb0cd3f956d3b11e3fbd98460ded8b267bd597
Merge: 3a3d523c789711b80373b9d24a9c23958962027d 
d133b67f780304b509a518f194abcab9424bcef5
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sat Mar 19 19:47:36 2011 +0100

Merge branch 'master' of git+ssh://git.debian.org/git/pkg-grass/hdf5


-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 1bbf8e41553a159c6771774f68740cdb3a8bbd8c
Merge: f4bc5851fc28ef813ee28484538dd93e27acd951 
67007fee240c07de384d7bec42cba6e9334bb08b
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri Feb 25 10:48:39 2011 +0100

Merge commit 'upstream/1.8.6'


-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 7f6dc8a4e6737e141e869adb8a971087cadd324e
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sun Aug 21 02:04:56 2011 +0200

  * mipsel and hurd-i386 symbols
  * s390x support. Thanks to Aurelien Jarno (Closes: #638363)

diff --git a/debian/changelog b/debian/changelog
index 4a717a0..d661113 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,7 +1,10 @@
 hdf5 (1.8.7-2~exp7) experimental; urgency=low
 
   * Fix a mistake in the powerpc symbol file
-  * mipsel symbols
+  * mipsel and hurd-i386 symbols
+  * s390x support. Thanks to Aurelien Jarno (Closes: #638363)
+  * h5cc, h5c++  h5fc moved to the dev packages (Closes: #629157, #637749)
+(LP: #770347)
 
  -- Sylvestre Ledru sylves...@debian.org  Fri, 12 Aug 2011 15:19:01 +0200
 
@@ -9,8 +12,8 @@ hdf5 (1.8.7-2~exp6) experimental; urgency=low
 
   * Close to the end: mips  powerpc symbols
   * Debug packages libhdf5-7-dbg, libhdf5-mpich2-7-dbg 
-libhdf5-mpich2-7 added (Closes: #604913)
-  * debian/rules: Some lam old commands removed 
+libhdf5-openmpi-7-dbg added (Closes: #604913)
+  * debian/rules: Some lam old commands removed
   * debian/html.tgz.uu: Repack with a correctly formated pdf (Closes: #585491)
   * Do not compress the pdfs of the documentation
 
diff --git a/debian/control b/debian/control
index 96ab815..237f0a5 100644
--- a/debian/control
+++ b/debian/control
@@ -5,8 +5,8 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org,
  Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev,
- libopenmpi-dev [!hppa !mips !mipsel !s390 !sh4 !m68k], libjpeg-dev, debhelper 
( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
+ libopenmpi-dev [!hppa !mips !mipsel !s390 !s390x !sh4 !m68k], libjpeg-dev, 
debhelper ( 7), sed (=4.1.5), 
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 !s390x 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
 Standards-Version: 3.9.2
 Homepage: http://hdfgroup.org/HDF5/
diff --git a/debian/control.in b/debian/control.in
index 31087bd..53244fe 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -5,8 +5,8 @@ Maintainer: Debian GIS Project 
pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org,
  Sylvestre Ledru sylves...@debian.org
 Build-Depends: libmpich2-dev, zlib1g-dev,
- libopenmpi-dev [!hppa !mips !mipsel !s390 !sh4 !m68k], libjpeg-dev, debhelper 
( 7), sed (=4.1.5), 
- gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
+ libopenmpi-dev [!hppa !mips !mipsel !s390 !s390x !sh4 !m68k], libjpeg-dev, 
debhelper ( 7), sed (=4.1.5), 
+ gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 !s390x 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
 Standards-Version: 3.9.2
 Homepage: http://hdfgroup.org/HDF5/
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index d21c228..386fa26 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2537,7 +2537,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !hurd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2641,20 +2641,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !hurd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !hurd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
- 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit ccd04af29832ef3012c57f380b6a9982a1157801
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 17:32:41 2011 +0200

Fix package-relation-with-self on libhdf5-7 (Provides:)

diff --git a/debian/changelog b/debian/changelog
index 87a8525..ba1f5ca 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,9 @@
 hdf5 (1.8.7-2~exp2) experimental; urgency=low
 
   * Update of the symbol files. Further uploads might come. (Closes: #636967)
+  * Fix package-relation-with-self on libhdf5-7 (Provides:)
+  * Fix a typo in the manpage h5import  h5diff
+  * Missing manpages for h5copy h5fc h5mkgrp h5perf_serial h5stat
 
  -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 13:22:06 +0200
 
diff --git a/debian/control b/debian/control
index 511a705..6e0260b 100644
--- a/debian/control
+++ b/debian/control
@@ -20,7 +20,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-7, libhdf5-1.8,
  libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, libhdf5-serial-1.8.6,
  libhdf5-1.8.7, libhdf5-serial-1.8.7
-Provides: libhdf5-7, libhdf5-1.8
+Provides: libhdf5-1.8
 Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, 
libhdf5-serial-1.8.6, libhdf5-1.8.7, libhdf5-serial-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
diff --git a/debian/control.in b/debian/control.in
index 38e8c4d..c8c95f6 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -20,6 +20,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}
 Conflicts: libhdf5-@SONAME@, libhdf5-@MAJOR_VERSION@,
  libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, libhdf5-serial-1.8.6,
  libhdf5-1.8.7, libhdf5-serial-1.8.7
+Provides: libhdf5-1.8
 Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, 
libhdf5-serial-1.8.6, libhdf5-1.8.7, libhdf5-serial-1.8.7
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit 82b0751d25717f826af34dd21587414ed95136bb
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Mon Feb 28 13:46:15 2011 +0100

Removed 1.8.3 targets.

diff --git a/debian/changelog b/debian/changelog
index 5842284..5ad5138 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,7 @@ hdf5 (1.8.6-1) unstable; urgency=low
   * Now using source format 3.0 and removed quilt build-dep.
   * Policy bumped to 3.9.1, no changes required.
   * Added ${misc:Depends} to all binary packages due to dh use.
+  * Removed virtual libhdf5-1.8.3 targets, obsolete after squeeze release.
 
   [ Sylvestre Ledru ]
   * New upstream release (Closes: #586232)
@@ -17,7 +18,7 @@ hdf5 (1.8.6-1) unstable; urgency=low
   * Patch sigbus.diff removed (upstream)
   * Patch autotools.diff removed (hdf5 1.8.6 is using autoconf 2.67)
 
- -- Francesco Paolo Lovergine fran...@debian.org  Fri, 25 Feb 2011 09:47:32 
+0100
+ -- Francesco Paolo Lovergine fran...@debian.org  Mon, 28 Feb 2011 13:44:53 
+0100
 
 hdf5 (1.8.4-patch1-2) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index 01c88ab..e57dd82 100644
--- a/debian/control
+++ b/debian/control
@@ -16,9 +16,10 @@ Package: libhdf5-serial-1.8.6
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.6, libhdf5-1.8, libhdf5-1.8.3
+Conflicts: libhdf5-1.8.6, libhdf5-1.8,
+ libhdf5-1.8.4, libhdf5-serial-1.8.4
 Provides: libhdf5-1.8.6, libhdf5-1.8
-Replaces: libhdf5-1.8.3
+Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -47,9 +48,10 @@ Section: libs
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.6, libhdf5-1.8, libhdf5-1.8.3
+Conflicts: libhdf5-1.8.6, libhdf5-1.8,
+ libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Provides: libhdf5-1.8.6, libhdf5-1.8
-Replaces: libhdf5-1.8.3
+Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -79,9 +81,10 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.6, libhdf5-1.8, libhdf5-1.8.3
+Conflicts: libhdf5-1.8.6, libhdf5-1.8, 
+ libhdf5-1.8.4,  libhdf5-openmpi-1.8.4
 Provides: libhdf5-1.8.6, libhdf5-1.8
-Replaces: libhdf5-1.8.3
+Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
diff --git a/debian/control.in b/debian/control.in
index 639178e..c7f3c80 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -16,10 +16,10 @@ Package: libhdf5-serial-@VERSION@
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3,
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@,
  libhdf5-1.8.4, libhdf5-serial-1.8.4
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.3, libhdf5-1.8.4, libhdf5-serial-1.8.4
+Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -48,10 +48,10 @@ Section: libs
 Priority: extra
 Architecture: @ARCHS@
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3,
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@,
  libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.3, libhdf5-1.8.4, libhdf5-openmpi-1.8.4
+Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -81,10 +81,10 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3, 
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, 
  libhdf5-1.8.4,  libhdf5-openmpi-1.8.4
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.3, libhdf5-1.8.4, libhdf5-openmpi-1.8.4
+Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 11422440dd843eda2a7ccdf3cffbe1062de8ec09
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri Feb 25 10:40:21 2011 +0100

  [ Sylvestre Ledru ]
  * New upstream release (Closes: #586232)
  * Default to 1.8 interface instead of 1.6 (Closes: #537414)
  * Remove dependency on libjpeg62-dev (Closes: #569234)
  * Dependency on LAM/MPI and/or MPICH dropped (Closes: #571453)
  * MPICH2 packages provided
  * Optimisation flags plugged back (Closes: #604906)
  * Fix a bad usage of sscanf in the hdf5 code which was introducing
a dependency on the glibc 2.7 (Closes: #599541)
  * Patch sigbus.diff removed (upstream)
  * Patch autotools.diff removed (hdf5 1.8.6 is using autoconf 2.67)

diff --git a/debian/patches/allowthreadsafe.diff 
b/debian/patches/allowthreadsafe.diff
new file mode 100644
index 000..f583457
--- /dev/null
+++ b/debian/patches/allowthreadsafe.diff
@@ -0,0 +1,22 @@
+Index: hdf5-1.8.6/configure.in
+===
+--- hdf5-1.8.6.orig/configure.in   2011-02-24 11:19:42.0 +0100
 hdf5-1.8.6/configure.in2011-02-24 11:19:51.0 +0100
+@@ -1876,17 +1876,6 @@
+   [Enable thread safe capability])],
+   THREADSAFE=$enableval)
+ 
+-dnl The --enable-threadsafe flag is not compatible with --enable-cxx.
+-dnl If the user tried to specify both flags, throw an error.
+-if test X${HDF_CXX} = Xyes -a X${enable_threadsafe} = Xyes; then
+-  AC_MSG_ERROR([--enable-cxx and --enable-threadsafe flags are incompatible])
+-fi
+-
+-dnl --enable-threadsafe is also incompatible with --enable-fortran.
+-if test X${HDF_FORTRAN} = Xyes -a X${enable_threadsafe} = Xyes; then
+-  AC_MSG_ERROR([--enable-fortran and --enable-threadsafe flags are 
incompatible])
+-fi
+-
+ case X-$THREADSAFE in
+   X-|X-no)
+ AC_MSG_RESULT([no])
diff --git a/debian/patches/sscanf.diff b/debian/patches/sscanf.diff
new file mode 100644
index 000..1d00a76
--- /dev/null
+++ b/debian/patches/sscanf.diff
@@ -0,0 +1,23 @@
+diff -ur hdf5-1.8.4-patch1.orig/src/H5Epublic.h 
hdf5-1.8.4-patch1/src/H5Epublic.h
+--- hdf5-1.8.4-patch1.orig/src/H5Epublic.h 2010-02-22 22:31:54.0 
+0100
 hdf5-1.8.4-patch1/src/H5Epublic.h  2010-10-08 20:23:55.0 +0200
+@@ -18,7 +18,7 @@
+  */
+ #ifndef _H5Epublic_H
+ #define _H5Epublic_H
+-
++#define _GNU_SOURCE
+ #include stdio.h  /*FILE arg of H5Eprint() 
*/
+ 
+ /* Public headers needed by this file */
+diff -ur hdf5-1.8.4-patch1.orig/src/H5private.h 
hdf5-1.8.4-patch1/src/H5private.h
+--- hdf5-1.8.4-patch1.orig/src/H5private.h 2010-02-22 22:31:54.0 
+0100
 hdf5-1.8.4-patch1/src/H5private.h  2010-10-08 20:24:16.0 +0200
+@@ -25,6 +25,7 @@
+ 
+ #ifndef _H5private_H
+ #define _H5private_H
++#define _GNU_SOURCE
+ 
+ #include H5public.h /* Include Public Definitions   */
+ 

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 249b363c2da4d5c12c4d977c0aa65b5592c3cad4
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed May 25 12:00:33 2011 +0200

  * Support of hurd-i386. Thanks to Pino Toscano for doing the work
(Closes: #627896)
  * Drop the useless lam4-dev dependency. Thanks to Pino Toscano.

diff --git a/debian/changelog b/debian/changelog
index c6edbdd..1d11008 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+hdf5 (1.8.7-2) experimental; urgency=low
+
+  * Support of hurd-i386. Thanks to Pino Toscano for doing the work
+(Closes: #627896)
+  * Drop the useless lam4-dev dependency. Thanks to Pino Toscano.
+
+ -- Sylvestre Ledru sylves...@debian.org  Wed, 25 May 2011 11:55:11 +0200
+
 hdf5 (1.8.7-1) experimental; urgency=low
 
   * New upstream release
diff --git a/debian/control b/debian/control
index b6aea44..1d71caa 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org,
  Sylvestre Ledru sylves...@debian.org
-Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
+Build-Depends: libmpich2-dev, zlib1g-dev,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
diff --git a/debian/control.in b/debian/control.in
index cae1e69..bb83af7 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -4,7 +4,7 @@ Priority: optional
 Maintainer: Debian GIS Project pkg-grass-devel@lists.alioth.debian.org
 Uploaders: Francesco Paolo Lovergine fran...@debian.org,
  Sylvestre Ledru sylves...@debian.org
-Build-Depends: libmpich2-dev, zlib1g-dev, lam4-dev (= 7.1.1-3.2),
+Build-Depends: libmpich2-dev, zlib1g-dev,
  libopenmpi-dev [!arm !armel !hppa !mips !mipsel !s390 !sh4 !m68k], 
libjpeg-dev, debhelper ( 7), sed (=4.1.5), 
  gfortran, libibverbs-dev [!arm !armel !hppa !mips !mipsel !s390 
!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4],
  sharutils, mpi-default-dev
diff --git a/debian/patches/path_max.diff b/debian/patches/path_max.diff
new file mode 100644
index 000..367bf9b
--- /dev/null
+++ b/debian/patches/path_max.diff
@@ -0,0 +1,26 @@
+--- a/src/H5F.c
 b/src/H5F.c
+@@ -80,6 +80,10 @@
+ /* Declare a free list to manage the H5F_file_t struct */
+ H5FL_DEFINE(H5F_file_t);
+ 
++#ifndef PATH_MAX
++#define PATH_MAX4096
++#endif  /* !PATH_MAX */
++
+ 
+ /*-
+  * Function:  H5F_init
+--- a/testpar/t_cache.c
 b/testpar/t_cache.c
+@@ -35,6 +35,10 @@
+ 
+ #include H5Fpkg.h
+ 
++#ifndef PATH_MAX
++#define PATH_MAX512
++#endif  /* !PATH_MAX */
++
+ 
+ int   nerrors = 0;
+ int   failures = 0;
diff --git a/debian/patches/series b/debian/patches/series
index 455eb94..a67c11f 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,7 @@ mpi.diff
 sscanf.diff
 disabler16check.diff
 
+debian-changes-1.8.7-1
+debian_no-lam.diff
+debian_openmpi-on-hurd.diff
+path_max.diff
diff --git a/debian/rules b/debian/rules
index 7c5d1b2..666d08e 100755
--- a/debian/rules
+++ b/debian/rules
@@ -27,7 +27,7 @@ DEFAULT_MPI=$(shell dpkg -s mpi-default-dev | grep Depends | 
sed s/Depends: lib
 #ARCH_FLAG=-a
 #ARCHS=any
 ARCH_FLAG=-s
-ARCHS=alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64
+ARCHS=alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 
hurd-i386
 
 ifeq ($(DEB_BUILD_ARCH),arm)
 build_openmpi = no

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 00bf548900dd8fe1e8da1e1f81d97808ba389353
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 20:27:32 2011 +0200

kfreebsd-amd64 symbols

diff --git a/debian/changelog b/debian/changelog
index 4a17e8b..70f9c36 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.7-2~exp3) experimental; urgency=low
+
+  * kfreebsd-amd64 symbols
+
+ -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 20:25:49 +0200
+
 hdf5 (1.8.7-2~exp2) experimental; urgency=low
 
   * Update of the symbol files. Further uploads might come. (Closes: #636967)
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 339c8ea..fc11afd 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2536,7 +2536,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11getEDCCheckEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
- (arch=!amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ (arch=!amd64 
kfreebsd-amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
  (arch=!i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
@@ -2640,20 +2640,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57IntTypeD2Ev@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
- (arch=!amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
- (arch=!amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
- (arch=!amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
- (arch=!amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
  (arch=!i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
@@ -2678,13 +2678,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
- (arch=!amd64)_ZN2H58CompTypeC1Ej@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H58CompTypeC1Ej@Base 1.8.7
  (arch=!i386)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
- (arch=!amd64)_ZN2H58CompTypeC2Ej@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H58CompTypeC2Ej@Base 1.8.7
  (arch=!i386)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
@@ -2699,7 +2699,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType6commitERNS_8H5ObjectERKSs@Base 1.8.7
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
- (arch=!amd64)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
  (arch=!i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2707,7 +2707,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1ERNS_9AttributeEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
- (arch=!amd64)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
  (arch=!i386)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2723,14 +2723,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58EnumTypeC1ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC1ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC1Ei@Base 1.8.7
- (arch=!amd64)_ZN2H58EnumTypeC1Ej@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H58EnumTypeC1Ej@Base 1.8.7
  (arch=!i386)_ZN2H58EnumTypeC1Em@Base 1.8.7
  _ZN2H58EnumTypeC1Ev@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC2Ei@Base 1.8.7
- (arch=!amd64)_ZN2H58EnumTypeC2Ej@Base 1.8.7
+ (arch=!amd64 kfreebsd-amd64)_ZN2H58EnumTypeC2Ej@Base 1.8.7
  (arch=!i386)_ZN2H58EnumTypeC2Em@Base 1.8.7
  

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 4528e12e3d6bff9b6b378f1713917901656c9005
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Tue Aug 2 18:30:40 2011 +0200

Rename package from libhdf5-serial-1.8.7 to libhdf5-serial-7 since upstream 
is now trying to manage correctly sonames and other abi/api changes

diff --git a/debian/changelog b/debian/changelog
index 3a5d863..1f9beda 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,9 +3,10 @@ hdf5 (1.8.7-2) UNRELEASED; urgency=low
   [ Sylvestre Ledru ]
   * Support of hurd-i386. Thanks to Pino Toscano for doing the work.
 (Closes: #627896)
-  * Drop the useless lam4-dev dependency. Thanks to Pino Toscano.
-(Closes: #604714)
+  * Drop the useless lam4-dev dependency. Thanks to Pino Toscano  Adam C 
+Powell IV (Closes: #604714)
   * armel/arm added to the archs of libhdf5-openmpi-dev (Closes: #636185)
+  * .la file are no longer shipped
 
   [ Francesco Paolo Lovergine ]
   * Ready for unstable.
diff --git a/debian/control b/debian/control
index fd01aa0..6155703 100644
--- a/debian/control
+++ b/debian/control
@@ -13,13 +13,13 @@ Homepage: http://hdfgroup.org/HDF5/
 Vcs-Browser: http://git.debian.org/?p=pkg-grass/hdf5.git
 Vcs-Git: git://git.debian.org/git/pkg-grass/hdf5.git
 
-Package: libhdf5-serial-1.8.7
+Package: libhdf5-serial-7
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.7, libhdf5-1.8,
+Conflicts: libhdf5-7, libhdf5-1.8,
  libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, libhdf5-serial-1.8.6
-Provides: libhdf5-1.8.7, libhdf5-1.8
+Provides: libhdf5-7, libhdf5-1.8
 Replaces: libhdf5-1.8.4, libhdf5-serial-1.8.4, libhdf5-1.8.6, 
libhdf5-serial-1.8.6
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
@@ -32,7 +32,7 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
 Package: libhdf5-serial-dev
 Section: libdevel
 Architecture: any
-Depends: libhdf5-serial-1.8.7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
+Depends: libhdf5-serial-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -44,14 +44,14 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - serial vers
  .
  This package contains development files for serial platforms.
 
-Package: libhdf5-openmpi-1.8.7
+Package: libhdf5-openmpi-7
 Section: libs
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 
hurd-i386
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.7, libhdf5-1.8,
+Conflicts: libhdf5-7, libhdf5-1.8,
  libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, libhdf5-openmpi-1.8.6
-Provides: libhdf5-1.8.7, libhdf5-1.8
+Provides: libhdf5-7, libhdf5-1.8
 Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
@@ -65,7 +65,7 @@ Package: libhdf5-openmpi-dev
 Section: libdevel
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 
hurd-i386
-Depends: libhdf5-openmpi-1.8.7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libopenmpi-dev, ${misc:Depends}
+Depends: libhdf5-openmpi-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libopenmpi-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -77,14 +77,14 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - OpenMPI ver
  .
  This package contains development files for use with OpenMPI.
 
-Package: libhdf5-mpich2-1.8.7
+Package: libhdf5-mpich2-7
 Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-1.8.7, libhdf5-1.8, 
+Conflicts: libhdf5-7, libhdf5-1.8, 
  libhdf5-1.8.4,  libhdf5-openmpi-1.8.4, libhdf5-1.8.6,  libhdf5-openmpi-1.8.6
-Provides: libhdf5-1.8.7, libhdf5-1.8
+Provides: libhdf5-7, libhdf5-1.8
 Replaces: libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, 
libhdf5-openmpi-1.8.6
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version
  HDF5 is a file format and library for storing scientific data. 
@@ -99,7 +99,7 @@ Package: libhdf5-mpich2-dev
 Section: libdevel
 Priority: extra
 Architecture: any
-Depends: libhdf5-mpich2-1.8.7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libmpich21.0-dev, ${misc:Depends}
+Depends: libhdf5-mpich2-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, 
libmpich21.0-dev, ${misc:Depends}
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
diff --git a/debian/control.in b/debian/control.in
index 9a88e75..d3e1e1e 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -13,13 +13,13 @@ Homepage: 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Francesco Paolo Lovergine
The following commit has been merged in the upstream branch:
commit d5ede42ba85d3eb6efe2419244d17ff3f644012f
Merge: 5d8571c7ea398c1538a45ee7dbb63f449e8f9c89 
c85a446f8e978c8caf2ca6f66fb6222aa371b212
Author: Francesco Paolo Lovergine fran...@debian.org
Date:   Fri Feb 25 00:18:21 2011 +0100

Merge branch 'upstream'


-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 1b1bb0d7719abc10c593574c92aa687d24286cca
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sat Aug 13 23:15:01 2011 +0200

With mipsel symbols

diff --git a/debian/changelog b/debian/changelog
index 5b1c497..4a717a0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,7 @@
 hdf5 (1.8.7-2~exp7) experimental; urgency=low
 
   * Fix a mistake in the powerpc symbol file
+  * mipsel symbols
 
  -- Sylvestre Ledru sylves...@debian.org  Fri, 12 Aug 2011 15:19:01 +0200
 
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 76a7dce..d21c228 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2537,7 +2537,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2641,20 +2641,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H57StrTypeC1EiRKm@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H57StrTypeC2EiRKm@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  _ZN2H57StrTypeD1Ev@Base 1.8.7
@@ -2679,13 +2679,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H58CompTypeC1Em@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H58CompTypeC2Em@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
  _ZN2H58CompTypeD1Ev@Base 1.8.7
@@ -2700,7 +2700,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2708,7 +2708,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !mipsel 
!powerpc)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_8H5ObjectEPKv10H5R_type_t@Base 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 5a217492b55b43326f030b54ce9bc79188562215
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 13:16:48 2011 +0200

Update of the symbol list with s390, amd64  kfreebsd-amd64 symbols

diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index f04e443..9355f66 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2536,7 +2536,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11getEDCCheckEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
- (arch=amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ (arch=amd64 s390 
kfreebsd-amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
  _ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7-2~exp1
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
@@ -2640,20 +2640,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57IntTypeD2Ev@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
- (arch=amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
- (arch=amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
  _ZN2H57StrTypeC1EiRKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
- (arch=amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
- (arch=amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
  _ZN2H57StrTypeC2EiRKm@Base 1.8.7-2~exp1
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
@@ -2678,13 +2678,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
- (arch=amd64)_ZN2H58CompTypeC1Ej@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H58CompTypeC1Ej@Base 1.8.7
  _ZN2H58CompTypeC1Em@Base 1.8.7-2~exp1
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
- (arch=amd64)_ZN2H58CompTypeC2Ej@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H58CompTypeC2Ej@Base 1.8.7
  _ZN2H58CompTypeC2Em@Base 1.8.7-2~exp1
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
@@ -2699,7 +2699,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType6commitERNS_8H5ObjectERKSs@Base 1.8.7
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
- (arch=amd64)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
  _ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7-2~exp1
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2707,7 +2707,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1ERNS_9AttributeEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
- (arch=amd64)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
  _ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7-2~exp1
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
@@ -2723,14 +2723,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58EnumTypeC1ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC1ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC1Ei@Base 1.8.7
- (arch=amd64)_ZN2H58EnumTypeC1Ej@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H58EnumTypeC1Ej@Base 1.8.7
  _ZN2H58EnumTypeC1Em@Base 1.8.7-2~exp1
  _ZN2H58EnumTypeC1Ev@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC2Ei@Base 1.8.7
- (arch=amd64)_ZN2H58EnumTypeC2Ej@Base 1.8.7
+ (arch=amd64 s390 kfreebsd-amd64)_ZN2H58EnumTypeC2Ej@Base 1.8.7
  _ZN2H58EnumTypeC2Em@Base 1.8.7-2~exp1
  _ZN2H58EnumTypeC2Ev@Base 1.8.7
  _ZN2H58EnumTypeD0Ev@Base 1.8.7
@@ -3009,22 +3009,22 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZNK2H515FileAccPropList15getSieveBufSizeEv@Base 1.8.7
  _ZNK2H515FileAccPropList15setFamilyOffsetEy@Base 1.8.7
  _ZNK2H515FileAccPropList15setGcReferencesEj@Base 1.8.7
- (arch=amd64)_ZNK2H515FileAccPropList15setSieveBufSizeEj@Base 1.8.7
+ (arch=amd64 s390 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit c4423b60ec254eebd6358ddd24d482ea3ea7c194
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 16:39:50 2011 +0200

hdf5 (1.8.7-2~exp2) experimental; urgency=low

  * Update of the symbol files. Further uploads might come. (Closes: 
#636967)

diff --git a/debian/changelog b/debian/changelog
index 9865252..87a8525 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.7-2~exp2) experimental; urgency=low
+
+  * Update of the symbol files. Further uploads might come. (Closes: #636967)
+
+ -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 13:22:06 +0200
+
 hdf5 (1.8.7-2~exp1) experimental; urgency=low
 
   * Rename libhdf5-serial-* to libhdf5 to avoid confusion and to highlight
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 9355f66..383cd6c 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2475,10 +2475,10 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H517DSetCreatPropListD0Ev@Base 1.8.7
  _ZN2H517DSetCreatPropListD1Ev@Base 1.8.7
  _ZN2H517DSetCreatPropListD2Ev@Base 1.8.7
- _ZN2H517DataSetIExceptionC1ERKS0_@Base 1.8.7
+ (arch=!i386)_ZN2H517DataSetIExceptionC1ERKS0_@Base 1.8.7
  _ZN2H517DataSetIExceptionC1ERKSsS2_@Base 1.8.7
  _ZN2H517DataSetIExceptionC1Ev@Base 1.8.7
- _ZN2H517DataSetIExceptionC2ERKS0_@Base 1.8.7
+ (arch=!i386)_ZN2H517DataSetIExceptionC2ERKS0_@Base 1.8.7
  _ZN2H517DataSetIExceptionC2ERKSsS2_@Base 1.8.7
  _ZN2H517DataSetIExceptionC2Ev@Base 1.8.7
  _ZN2H517DataSetIExceptionD0Ev@Base 1.8.7
@@ -2501,10 +2501,10 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H517LibraryIExceptionD0Ev@Base 1.8.7
  _ZN2H517LibraryIExceptionD1Ev@Base 1.8.7
  _ZN2H517LibraryIExceptionD2Ev@Base 1.8.7
- _ZN2H518DataTypeIExceptionC1ERKS0_@Base 1.8.7
+ (arch=!i386)_ZN2H518DataTypeIExceptionC1ERKS0_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC1ERKSsS2_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC1Ev@Base 1.8.7
- _ZN2H518DataTypeIExceptionC2ERKS0_@Base 1.8.7
+ (arch=!i386)_ZN2H518DataTypeIExceptionC2ERKS0_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC2ERKSsS2_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC2Ev@Base 1.8.7
  _ZN2H518DataTypeIExceptionD0Ev@Base 1.8.7
@@ -2524,10 +2524,10 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H518ReferenceExceptionD0Ev@Base 1.8.7
  _ZN2H518ReferenceExceptionD1Ev@Base 1.8.7
  _ZN2H518ReferenceExceptionD2Ev@Base 1.8.7
- _ZN2H519AttributeIExceptionC1ERKS0_@Base 1.8.7
+ (arch=!i386)_ZN2H519AttributeIExceptionC1ERKS0_@Base 1.8.7
  _ZN2H519AttributeIExceptionC1ERKSsS2_@Base 1.8.7
  _ZN2H519AttributeIExceptionC1Ev@Base 1.8.7
- _ZN2H519AttributeIExceptionC2ERKS0_@Base 1.8.7
+ (arch=!i386)_ZN2H519AttributeIExceptionC2ERKS0_@Base 1.8.7
  _ZN2H519AttributeIExceptionC2ERKSsS2_@Base 1.8.7
  _ZN2H519AttributeIExceptionC2Ev@Base 1.8.7
  _ZN2H519AttributeIExceptionD0Ev@Base 1.8.7
@@ -2536,8 +2536,8 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11getEDCCheckEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
- (arch=amd64 s390 
kfreebsd-amd64)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- _ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7-2~exp1
+ _ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
+ (arch=!i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2640,21 +2640,21 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57IntTypeD2Ev@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
- (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
- _ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7-2~exp1
+ _ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
- (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- _ZN2H57StrTypeC1EiRKm@Base 1.8.7-2~exp1
+ _ZN2H57StrTypeC1EiRKj@Base 1.8.7
+ (arch=!i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
- (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
- _ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7-2~exp1
+ _ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 1.8.7
+ (arch=!i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
- (arch=amd64 s390 kfreebsd-amd64)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
- _ZN2H57StrTypeC2EiRKm@Base 1.8.7-2~exp1
+ _ZN2H57StrTypeC2EiRKj@Base 1.8.7
+ (arch=!i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 52789cababc997648834d4f64962be37cdafdac7
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri Aug 12 15:19:19 2011 +0200

* Fix a mistake in the powerpc symbol file

diff --git a/debian/changelog b/debian/changelog
index 6ca84ba..5b1c497 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.7-2~exp7) experimental; urgency=low
+
+  * Fix a mistake in the powerpc symbol file
+
+ -- Sylvestre Ledru sylves...@debian.org  Fri, 12 Aug 2011 15:19:01 +0200
+
 hdf5 (1.8.7-2~exp6) experimental; urgency=low
 
   * Close to the end: mips  powerpc symbols
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 88fd4a9..76a7dce 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2645,7 +2645,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips !power)_ZN2H57StrTypeC1EiRKm@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H57StrTypeC1EiRKm@Base 
1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
@@ -3010,7 +3010,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZNK2H515FileAccPropList15setFamilyOffsetEy@Base 1.8.7
  _ZNK2H515FileAccPropList15setGcReferencesEj@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZNK2H515FileAccPropList15setSieveBufSizeEj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel 
!mips)_ZNK2H515FileAccPropList15setSieveBufSizeEm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZNK2H515FileAccPropList15setSieveBufSizeEm@Base 1.8.7
  _ZNK2H515FileAccPropList16getMetaBlockSizeEv@Base 1.8.7
  _ZNK2H515FileAccPropList16setMetaBlockSizeERy@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZNK2H515FileAccPropList6setLogEPKcjj@Base 
1.8.7

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit e476b4abd5a4a63bc544ec1594589a9d5d46787e
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sun Aug 21 13:06:43 2011 +0200

manpages at the right place

diff --git a/debian/control b/debian/control
index e02515b..6a7ea4b 100644
--- a/debian/control
+++ b/debian/control
@@ -189,7 +189,7 @@ Description: Hierarchical Data Format 5 (HDF5) - 
Documentation
 
 Package: hdf5-helpers
 Section: science
-Architecture: all
+Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Description: Hierarchical Data Format 5 (HDF5) - Helper tools 
  HDF5 is a file format and library for storing scientific data. 
diff --git a/debian/control.in b/debian/control.in
index b3dc211..55ab3b9 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -189,7 +189,7 @@ Description: Hierarchical Data Format 5 (HDF5) - 
Documentation
 
 Package: hdf5-helpers
 Section: science
-Architecture: all
+Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Description: Hierarchical Data Format 5 (HDF5) - Helper tools 
  HDF5 is a file format and library for storing scientific data. 
diff --git a/debian/hdf5-helpers.manpages b/debian/hdf5-helpers.manpages
new file mode 100644
index 000..2fd715a
--- /dev/null
+++ b/debian/hdf5-helpers.manpages
@@ -0,0 +1,4 @@
+debian/man/h5cc.1
+debian/man/h5c++.1
+debian/man/h5fc.1
+
diff --git a/debian/hdf5-tools.manpages b/debian/hdf5-tools.manpages
index 13cdaf4..5e7d0a2 100644
--- a/debian/hdf5-tools.manpages
+++ b/debian/hdf5-tools.manpages
@@ -1 +1,15 @@
-debian/man/*.1
+debian/man/h5mkgrp.1
+debian/man/h5copy.1
+debian/man/h52gif.1
+debian/man/h5stat.1
+debian/man/h5import.1
+debian/man/h5unjam.1
+debian/man/h5repack.1
+debian/man/h5redeploy.1
+debian/man/h5perf_serial.1
+debian/man/gif2h5.1
+debian/man/h5diff.1
+debian/man/h5ls.1
+debian/man/h5dump.1
+debian/man/h5jam.1
+debian/man/h5repart.1

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit daf9b16865520d5830e39f97991940a4a26495bf
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sun Aug 21 10:51:15 2011 +0200

Rename the package + rules

diff --git a/debian/control b/debian/control
index 5d03349..e02515b 100644
--- a/debian/control
+++ b/debian/control
@@ -48,7 +48,7 @@ Package: libhdf5-dev
 Section: libdevel
 Architecture: any
 Depends: libhdf5-7 (= ${binary:Version}), zlib1g-dev, libjpeg-dev,
- ${misc:Depends}, hdf5-helper
+ ${misc:Depends}, hdf5-helpers
 Conflicts: libhdf5-dev
 Suggests: libhdf5-doc
 Description: Hierarchical Data Format 5 (HDF5) - development files - serial 
version
@@ -83,7 +83,7 @@ Section: libdevel
 Priority: extra
 Architecture: alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 
hurd-i386
 Depends: libhdf5-openmpi-7 (= ${binary:Version}), zlib1g-dev,
- libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helper
+ libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helpers
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -134,7 +134,7 @@ Section: libdevel
 Priority: extra
 Architecture: any
 Depends: libhdf5-mpich2-7 (= ${binary:Version}), zlib1g-dev,
- libjpeg-dev, libmpich21.0-dev, ${misc:Depends}, hdf5-helper
+ libjpeg-dev, libmpich21.0-dev, ${misc:Depends}, hdf5-helpers
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -187,7 +187,7 @@ Description: Hierarchical Data Format 5 (HDF5) - 
Documentation
  .
  This package contains documentation for HDF5.
 
-Package: hdf5-helper
+Package: hdf5-helpers
 Section: science
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}
diff --git a/debian/control.in b/debian/control.in
index 0e74cc2..b3dc211 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -48,7 +48,7 @@ Package: libhdf5-dev
 Section: libdevel
 Architecture: any
 Depends: libhdf5-@SONAME@ (= ${binary:Version}), zlib1g-dev, libjpeg-dev,
- ${misc:Depends}, hdf5-helper
+ ${misc:Depends}, hdf5-helpers
 Conflicts: libhdf5-dev
 Suggests: libhdf5-doc
 Description: Hierarchical Data Format 5 (HDF5) - development files - serial 
version
@@ -83,7 +83,7 @@ Section: libdevel
 Priority: extra
 Architecture: @ARCHS@
 Depends: libhdf5-openmpi-@SONAME@ (= ${binary:Version}), zlib1g-dev,
- libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helper
+ libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helpers
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -134,7 +134,7 @@ Section: libdevel
 Priority: extra
 Architecture: any
 Depends: libhdf5-mpich2-@SONAME@ (= ${binary:Version}), zlib1g-dev,
- libjpeg-dev, libmpich21.0-dev, ${misc:Depends}, hdf5-helper
+ libjpeg-dev, libmpich21.0-dev, ${misc:Depends}, hdf5-helpers
 Conflicts: libhdf5-dev
 Provides: libhdf5-dev
 Suggests: libhdf5-doc
@@ -187,7 +187,7 @@ Description: Hierarchical Data Format 5 (HDF5) - 
Documentation
  .
  This package contains documentation for HDF5.
 
-Package: hdf5-helper
+Package: hdf5-helpers
 Section: science
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}
diff --git a/debian/rules b/debian/rules
index 7899a30..330f368 100755
--- a/debian/rules
+++ b/debian/rules
@@ -185,7 +185,7 @@ install-serial: build-stamp
dh_testroot
-mkdir debian/build/tmpinst
$(MAKE) -C debian/build/ install 
prefix=$(CURDIR)/debian/build/tmpinst/usr
-   dh_install -p$(serpack) -p$(package)-dev -phdf5-tools \
+   dh_install -p$(serpack) -p$(package)-dev -phdf5-helpers -phdf5-tools \
--sourcedir=debian/build/tmpinst
 
 install-openmpi: build-stamp-openmpi
@@ -232,6 +232,7 @@ binary-arch: prep install-serial $(install_openmpi) 
install-mpich2
dh_installchangelogs -a -k release_docs/RELEASE.txt
dh_link $(ARCH_FLAG)
dh_strip -phdf5-tools
+   dh_strip -phdf5-helpers
dh_strip -p$(serpack) --dbg-package=$(serpack)-dbg
dh_strip -p$(mpich2pack) --dbg-package=$(mpich2pack)-dbg
 ifeq ($(build_openmpi),yes)
@@ -247,6 +248,7 @@ endif
dh_installdeb $(ARCH_FLAG)
dh_shlibdeps -p$(serpack) -L$(serpack) 
-ldebian/$(serpack)/usr/lib:debian/build/test/.libs
dh_shlibdeps -phdf5-tools -L$(serpack) 
-ldebian/$(serpack)/usr/lib:debian/build/test/.libs 
+   dh_shlibdeps -phdf5-helpers -L$(serpack) 
-ldebian/$(serpack)/usr/lib:debian/build/test/.libs 
 ifeq ($(build_openmpi),yes)
dh_shlibdeps -p$(openmpipack) -L$(openmpipack) 
-ldebian/$(openmpipack)/usr/lib
 endif

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 1e2d05bcfbe3642f5f6f911cdbd0dc4cf3fd7437
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Aug 11 18:10:38 2011 +0200

  * Debug packages libhdf5-7-dbg, libhdf5-mpich2-7-dbg 
libhdf5-mpich2-7 added (Closes: #604913)

diff --git a/debian/changelog b/debian/changelog
index be31e4b..6ca84ba 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,11 @@
 hdf5 (1.8.7-2~exp6) experimental; urgency=low
 
   * Close to the end: mips  powerpc symbols
-  * h5cc/h5c++/h5fc compiler wrappers moved from hdf5-tools to libhdf5-*-dev
-(Closes: #629157) (LP: #770347)
+  * Debug packages libhdf5-7-dbg, libhdf5-mpich2-7-dbg 
+libhdf5-mpich2-7 added (Closes: #604913)
+  * debian/rules: Some lam old commands removed 
+  * debian/html.tgz.uu: Repack with a correctly formated pdf (Closes: #585491)
+  * Do not compress the pdfs of the documentation
 
  -- Sylvestre Ledru sylves...@debian.org  Wed, 10 Aug 2011 20:21:46 +0200
 
diff --git a/debian/control b/debian/control
index 34a2e25..96ab815 100644
--- a/debian/control
+++ b/debian/control
@@ -30,6 +30,20 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
  .
  This package contains runtime files for serial platforms.
 
+Package: libhdf5-7-dbg
+Section: debug
+Priority: extra
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends},
+ libhdf5-7 (= ${binary:Version}),
+Description: Hierarchical Data Format 5 (HDF5) - Debug package
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package contains debug libraries.
+
 Package: libhdf5-dev
 Section: libdevel
 Architecture: any
@@ -79,6 +93,20 @@ Description: Hierarchical Data Format 5 (HDF5) - development 
files - OpenMPI ver
  .
  This package contains development files for use with OpenMPI.
 
+Package: libhdf5-openmpi-7-dbg
+Section: debug
+Priority: extra
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends},
+ libhdf5-openmpi-7 (= ${binary:Version}),
+Description: Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package contains debug hdf5/openmpi libraries.
+
 Package: libhdf5-mpich2-7
 Section: libs
 Priority: extra
@@ -116,6 +144,20 @@ Description: Hierarchical Data Format 5 (HDF5) - 
development files - MPICH2 vers
  This package contains development files for use with MPICH2. Warning:
  the C++ interface is not provided for this version.
 
+Package: libhdf5-mpich2-7-dbg
+Section: debug
+Priority: extra
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends},
+ libhdf5-mpich2-7 (= ${binary:Version}),
+Description: Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package contains debug hdf5/mpich2 libraries.
+
 Package: libhdf5-mpi-dev
 Section: libdevel
 Priority: extra
diff --git a/debian/control.in b/debian/control.in
index 4b358c3..31087bd 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -30,6 +30,20 @@ Description: Hierarchical Data Format 5 (HDF5) - runtime 
files - serial version
  .
  This package contains runtime files for serial platforms.
 
+Package: libhdf5-@SONAME@-dbg
+Section: debug
+Priority: extra
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends},
+ libhdf5-@SONAME@ (= ${binary:Version}),
+Description: Hierarchical Data Format 5 (HDF5) - Debug package
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a more powerful and flexible data model, supports
+ files larger than 2 GB, and supports parallel I/O.
+ .
+ This package contains debug libraries.
+
 Package: libhdf5-dev
 Section: libdevel
 Architecture: any
@@ -79,6 +93,20 @@ Description: Hierarchical Data Format 5 (HDF5) - development 
files - OpenMPI ver
  .
  This package contains development files for use with OpenMPI.
 
+Package: libhdf5-openmpi-@SONAME@-dbg
+Section: debug
+Priority: extra
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends},
+ libhdf5-openmpi-@SONAME@ (= ${binary:Version}),
+Description: Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package
+ HDF5 is a file format and library for storing scientific data. 
+ HDF5 was designed and implemented to address the deficiencies of
+ HDF4.x. It has a 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 205ac14c92740aa1d9eab50cd27a79253bf7977a
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Aug 10 12:15:40 2011 +0200

armel symbols

diff --git a/debian/changelog b/debian/changelog
index fe847c2..9633e5f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.7-2~exp5) experimental; urgency=low
+
+  * Armel symbol
+
+ -- Sylvestre Ledru sylves...@debian.org  Wed, 10 Aug 2011 12:15:24 +0200
+
 hdf5 (1.8.7-2~exp4) experimental; urgency=low
 
   * Fix a mistake in the symbol declaration
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 80a2547..055e7fc 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2501,10 +2501,10 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H517LibraryIExceptionD0Ev@Base 1.8.7
  _ZN2H517LibraryIExceptionD1Ev@Base 1.8.7
  _ZN2H517LibraryIExceptionD2Ev@Base 1.8.7
- (arch=!i386)_ZN2H518DataTypeIExceptionC1ERKS0_@Base 1.8.7
+ (arch=!i386 !armel)_ZN2H518DataTypeIExceptionC1ERKS0_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC1ERKSsS2_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC1Ev@Base 1.8.7
- (arch=!i386)_ZN2H518DataTypeIExceptionC2ERKS0_@Base 1.8.7
+ (arch=!i386 !armel)_ZN2H518DataTypeIExceptionC2ERKS0_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC2ERKSsS2_@Base 1.8.7
  _ZN2H518DataTypeIExceptionC2Ev@Base 1.8.7
  _ZN2H518DataTypeIExceptionD0Ev@Base 1.8.7
@@ -2537,7 +2537,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- (arch=!i386 
!kfreebsd-i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 
!armel)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2641,20 +2641,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 
1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 
1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  _ZN2H57StrTypeD1Ev@Base 1.8.7
@@ -2679,13 +2679,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386)_ZN2H58CompTypeC1Em@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386)_ZN2H58CompTypeC2Em@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
  _ZN2H58CompTypeD1Ev@Base 1.8.7
@@ -2700,7 +2700,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2708,7 +2708,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
- 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit b2f2b07ca4367ecb3590e39be08dd87d88fc78d1
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 17:44:55 2011 +0200

enable the parallel build

diff --git a/debian/changelog b/debian/changelog
index ba1f5ca..4a17e8b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,7 @@ hdf5 (1.8.7-2~exp2) experimental; urgency=low
   * Fix package-relation-with-self on libhdf5-7 (Provides:)
   * Fix a typo in the manpage h5import  h5diff
   * Missing manpages for h5copy h5fc h5mkgrp h5perf_serial h5stat
+  * Enable parallel compilation
 
  -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 13:22:06 +0200
 
diff --git a/debian/rules b/debian/rules
index e4c89e0..0ab17a3 100755
--- a/debian/rules
+++ b/debian/rules
@@ -77,6 +77,13 @@ endif
 # endif
 ###
 
+# export DEB_BUILD_OPTIONS=parallel=2
+#
+ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
+   NUMJOBS = $(patsubst parallel=%,%,$(filter 
parallel=%,$(DEB_BUILD_OPTIONS)))
+   MAKEFLAGS += -j$(NUMJOBS)
+endif  
+
 CONFIGURE_FLAGS = --prefix=/usr --host=$(DEB_HOST_GNU_TYPE) \
  --build=$(DEB_BUILD_GNU_TYPE) \
  --mandir=\$${prefix}/share/man \
@@ -140,17 +147,17 @@ build: build-stamp $(build_stamp_openmpi) 
build-stamp-mpich2
 
 build-stamp: configure-stamp
dh_testdir
-   $(MAKE) -C debian/build/
+   $(MAKE) $(MAKEFLAGS) -C debian/build/
touch $@
 
 build-stamp-openmpi: configure-stamp-openmpi 
dh_testdir
-   $(MAKE)  -C debian/build-openmpi/ OMPI_MCA_disable_memory_allocator=1
+   $(MAKE)  $(MAKEFLAGS) -C debian/build-openmpi/ 
OMPI_MCA_disable_memory_allocator=1
touch $@
 
 build-stamp-mpich2: configure-stamp-mpich2 
dh_testdir
-   $(MAKE) -C debian/build-mpich2/
+   $(MAKE)  $(MAKEFLAGS) -C debian/build-mpich2/
touch $@
 
 #

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 6029eda88a06fc59e35a658279e531ceb5bd00ea
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Mon Aug 8 22:49:38 2011 +0200

kfreebsd-i386 symbols

diff --git a/debian/changelog b/debian/changelog
index 22a3935..92aead9 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
 hdf5 (1.8.7-2~exp3) experimental; urgency=low
 
-  * kfreebsd-amd64, s390, mipsel  powerpc symbols
+  * kfreebsd-amd64, kfreebsd-i386, s390, mipsel  powerpc symbols
 
  -- Sylvestre Ledru sylves...@debian.org  Mon, 08 Aug 2011 20:25:49 +0200
 
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index dd27e0d..51ab4d9 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2537,7 +2537,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 
s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- (arch=!i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
+ (arch=!i386 
kfreebsd-i386)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2641,20 +2641,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
- (arch=!i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  _ZN2H57StrTypeD1Ev@Base 1.8.7
@@ -2679,13 +2679,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
- (arch=!i386)_ZN2H58CompTypeC1Em@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
- (arch=!i386)_ZN2H58CompTypeC2Em@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
  _ZN2H58CompTypeD1Ev@Base 1.8.7
@@ -2700,7 +2700,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
- (arch=!i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2708,7 +2708,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
- (arch=!i386)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2724,14 +2724,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58EnumTypeC1ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC1Ei@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58EnumTypeC1Ej@Base 1.8.7
- (arch=!i386)_ZN2H58EnumTypeC1Em@Base 1.8.7
+ (arch=!i386 kfreebsd-i386)_ZN2H58EnumTypeC1Em@Base 1.8.7
  _ZN2H58EnumTypeC1Ev@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKNS_7IntTypeE@Base 1.8.7
  _ZN2H58EnumTypeC2ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC2Ei@Base 1.8.7
  (arch=!amd64 kfreebsd-amd64 s390)_ZN2H58EnumTypeC2Ej@Base 1.8.7
- 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 402fae41b072cb4ddac3cb07989f9f1df62e0d27
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Aug 10 20:22:01 2011 +0200

  * Close to the end: mips symbols

diff --git a/debian/changelog b/debian/changelog
index 824daed..3bb301a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+hdf5 (1.8.7-2~exp6) experimental; urgency=low
+
+  * Close to the end: mips symbols
+
+ -- Sylvestre Ledru sylves...@debian.org  Wed, 10 Aug 2011 20:21:46 +0200
+
 hdf5 (1.8.7-2~exp5) experimental; urgency=low
 
   * Armel, s390  powerpc symbol updates
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 7c27207..35ead96 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2537,7 +2537,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 
!armel)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel 
!mips)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2641,20 +2641,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel 
!mips)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel 
!mips)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  _ZN2H57StrTypeD1Ev@Base 1.8.7
@@ -2679,13 +2679,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H58CompTypeC1Em@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58CompTypeC1Em@Base 1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H58CompTypeC2Em@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58CompTypeC2Em@Base 1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
  _ZN2H58CompTypeD1Ev@Base 1.8.7
@@ -2700,7 +2700,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58DataTypeC1E11H5T_class_tm@Base 
1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2708,7 +2708,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel)_ZN2H58DataTypeC2E11H5T_class_tm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58DataTypeC2E11H5T_class_tm@Base 
1.8.7
  _ZN2H58DataTypeC2ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC2ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2724,14 +2724,14 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58EnumTypeC1ERKS0_@Base 1.8.7
  _ZN2H58EnumTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58EnumTypeC1Ej@Base 1.8.7
- (arch=!i386 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit fea0f005731d0e81ebec6dc2aeea5600f036281b
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Wed Aug 10 23:42:10 2011 +0200

powerpc symbol

diff --git a/debian/changelog b/debian/changelog
index 3bb301a..91016e7 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
 hdf5 (1.8.7-2~exp6) experimental; urgency=low
 
-  * Close to the end: mips symbols
+  * Close to the end: mips  powerpc symbols
 
  -- Sylvestre Ledru sylves...@debian.org  Wed, 10 Aug 2011 20:21:46 +0200
 
diff --git a/debian/libhdf5-7.symbols b/debian/libhdf5-7.symbols
index 35ead96..88fd4a9 100644
--- a/debian/libhdf5-7.symbols
+++ b/debian/libhdf5-7.symbols
@@ -2083,7 +2083,7 @@ libhdf5.so.7 libhdf5-7 #MINVER#
  H5T_conv_ullong_float@Base 1.8.7
  H5T_conv_ullong_int@Base 1.8.7
  H5T_conv_ullong_ldouble@Base 1.8.7
- (arch=!armel !power !mipsel)H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!armel !power !mipsel !powerpc)H5T_conv_ullong_ldouble@Base 1.8.7
  H5T_conv_ullong_llong@Base 1.8.7
  H5T_conv_ullong_long@Base 1.8.7
  H5T_conv_ullong_schar@Base 1.8.7
@@ -2537,7 +2537,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H519DSetMemXferPropList11setEDCCheckE9H5Z_EDC_t@Base 1.8.7
  _ZN2H519DSetMemXferPropList18getHyperVectorSizeEv@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 
!s390)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel 
!mips)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H519DSetMemXferPropList18setHyperVectorSizeEm@Base 1.8.7
  _ZN2H519DSetMemXferPropList21getSmallDataBlockSizeEv@Base 1.8.7
  _ZN2H519DSetMemXferPropList21setSmallDataBlockSizeEy@Base 1.8.7
  _ZN2H519DSetMemXferPropList7DEFAULTE@Base 1.8.7
@@ -2641,20 +2641,20 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H57StrTypeC1ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC1ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386 !armel 
!mips)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H57StrTypeC1ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC1ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC1EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H57StrTypeC1EiRKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !power)_ZN2H57StrTypeC1EiRKm@Base 
1.8.7
  _ZN2H57StrTypeC1Ev@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H57StrTypeC2ERKNS_8PredTypeE@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2ERKNS_8PredTypeERKj@Base 
1.8.7
- (arch=!i386 !kfreebsd-i386 !armel 
!mips)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H57StrTypeC2ERKNS_8PredTypeERKm@Base 1.8.7
  _ZN2H57StrTypeC2ERKS0_@Base 1.8.7
  _ZN2H57StrTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H57StrTypeC2EiRKj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H57StrTypeC2EiRKm@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H57StrTypeC2EiRKm@Base 
1.8.7
  _ZN2H57StrTypeC2Ev@Base 1.8.7
  _ZN2H57StrTypeD0Ev@Base 1.8.7
  _ZN2H57StrTypeD1Ev@Base 1.8.7
@@ -2679,13 +2679,13 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58CompTypeC1ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC1Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC1Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58CompTypeC1Em@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H58CompTypeC1Em@Base 
1.8.7
  _ZN2H58CompTypeC1Ev@Base 1.8.7
  _ZN2H58CompTypeC2ERKNS_7DataSetE@Base 1.8.7
  _ZN2H58CompTypeC2ERKS0_@Base 1.8.7
  _ZN2H58CompTypeC2Ei@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58CompTypeC2Ej@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58CompTypeC2Em@Base 1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips !powerpc)_ZN2H58CompTypeC2Em@Base 
1.8.7
  _ZN2H58CompTypeC2Ev@Base 1.8.7
  _ZN2H58CompTypeD0Ev@Base 1.8.7
  _ZN2H58CompTypeD1Ev@Base 1.8.7
@@ -2700,7 +2700,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataType7p_setIdEi@Base 1.8.7
  _ZN2H58DataType8p_commitEiPKc@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC1E11H5T_class_tj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58DataTypeC1E11H5T_class_tm@Base 
1.8.7
+ (arch=!i386 !kfreebsd-i386 !armel !mips 
!powerpc)_ZN2H58DataTypeC1E11H5T_class_tm@Base 1.8.7
  _ZN2H58DataTypeC1ERKS0_@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_6H5FileEPKv10H5R_type_t@Base 1.8.7
  _ZN2H58DataTypeC1ERNS_8H5ObjectEPKv10H5R_type_t@Base 1.8.7
@@ -2708,7 +2708,7 @@ libhdf5_cpp.so.7 libhdf5-7 #MINVER#
  _ZN2H58DataTypeC1Ei@Base 1.8.7
  _ZN2H58DataTypeC1Ev@Base 1.8.7
  (arch=!amd64 !kfreebsd-amd64 !s390)_ZN2H58DataTypeC2E11H5T_class_tj@Base 1.8.7
- (arch=!i386 !kfreebsd-i386 !armel !mips)_ZN2H58DataTypeC2E11H5T_class_tm@Base 

[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 5173e311f3926b663f5b822cb4d3f11788a6da41
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri May 13 15:33:04 2011 +0200

  * Get ride of DEBCC, DEBCXX  DEBFORTRAN useless variables

diff --git a/debian/changelog b/debian/changelog
index 66f1859..fe2439f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,6 +2,7 @@ hdf5 (1.8.6-3) experimental; urgency=low
 
   * Get ride of the -m128bit-long-double FFLAGS (was introduced to fix bug
 #619281)
+  * Get ride of DEBCC, DEBCXX  DEBFORTRAN useless variables
 
  -- Sylvestre Ledru sylves...@debian.org  Fri, 13 May 2011 15:26:12 +0200
 
diff --git a/debian/rules b/debian/rules
index a8ae4b3..8c34a51 100755
--- a/debian/rules
+++ b/debian/rules
@@ -68,19 +68,14 @@ endif
 #   DEBCC=gcc-3.2
 #   DEBCXX=g++-3.2
 # else
-DEBCC=gcc
-DEBCXX=g++
-DEBFORTRAN=gfortran  # cf bug #622783
+#DEBCC=gcc
+#DEBCXX=g++
+#DEBFORTRAN=gfortran
 # With gcc 4.3+ force optimization off, else some tests fail...
 #DEBOPT=-O0
 # endif
 ###
 
-export MPICH2_CC=$(DEBCC)
-export MPICH2_CLINKER=$(DEBCC)
-export MPICH2_CCC=$(DEBCXX)
-export MPICH2_CCLINKER=$(DEBCXX)
-
 CONFIGURE_FLAGS = --prefix=/usr --host=$(DEB_HOST_GNU_TYPE) \
  --build=$(DEB_BUILD_GNU_TYPE) \
  --mandir=\$${prefix}/share/man \
@@ -112,7 +107,7 @@ configure-stamp-serial: configure-stamp-debian
dh_testdir
-mkdir debian/build-serial
 # configure serial version
-   cd debian/build-serial  CC=$(DEBCC) CXX=$(DEBCXX) F9X=$(DEBFORTRAN) 
CFLAGS=$(CFLAGS) CXXFLAGS=$(CXXFLAGS) FFLAGS=$(FFLAGS) \
+   cd debian/build-serial  CFLAGS=$(CFLAGS) CXXFLAGS=$(CXXFLAGS) 
FFLAGS=$(FFLAGS) \
../../configure $(CONFIGURE_FLAGS) $(SERIAL_ONLY_FLAGS) 
touch $@
 

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Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit f54f65d83f50dcdbb3215c55f3fd00dd561742aa
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Mar 10 13:15:33 2011 +0100

disable the disableH5fortran_detect.f90.diff patch

diff --git a/debian/patches/series b/debian/patches/series
index 70c1730..95f7e47 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,5 +1,4 @@
 mpi.diff
 sscanf.diff
 autotools.diff
-
 allowthreadsafe.diff

-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit 9e1d00e7cd365cee745e912fa4abc3f88f1ceb4f
Merge: e476b4abd5a4a63bc544ec1594589a9d5d46787e 
e9b57dcd48de0ed4e766e305096d0052877492ae
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Sun Aug 21 13:16:55 2011 +0200

Merge branch 'master' of git+ssh://git.debian.org/git/pkg-grass/hdf5


-- 
Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit dc364bbd2a91b12a4bd158c56c8a5c06bd2a43ec
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Thu Aug 11 10:53:51 2011 +0200

  * h5cc/h5c++/h5fc compiler wrappers moved from hdf5-tools to libhdf5-*-dev
(Closes: #629157) (LP: #770347)

diff --git a/debian/changelog b/debian/changelog
index 91016e7..be31e4b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,8 @@
 hdf5 (1.8.7-2~exp6) experimental; urgency=low
 
   * Close to the end: mips  powerpc symbols
+  * h5cc/h5c++/h5fc compiler wrappers moved from hdf5-tools to libhdf5-*-dev
+(Closes: #629157) (LP: #770347)
 
  -- Sylvestre Ledru sylves...@debian.org  Wed, 10 Aug 2011 20:21:46 +0200
 
diff --git a/debian/hdf5-tools.install b/debian/hdf5-tools.install
index e772481..55c7027 100644
--- a/debian/hdf5-tools.install
+++ b/debian/hdf5-tools.install
@@ -1 +1,16 @@
-usr/bin
+usr/bin/gif2h5
+usr/bin/h52gif
+usr/bin/h5copy
+usr/bin/h5debug
+usr/bin/h5diff
+usr/bin/h5dump
+usr/bin/h5import
+usr/bin/h5jam
+usr/bin/h5ls
+usr/bin/h5mkgrp
+usr/bin/h5perf_serial
+usr/bin/h5redeploy
+usr/bin/h5repack
+usr/bin/h5repart
+usr/bin/h5stat
+usr/bin/h5unjam
diff --git a/debian/install_devlib b/debian/install_devlib
index ad156fa..9626974 100644
--- a/debian/install_devlib
+++ b/debian/install_devlib
@@ -2,3 +2,6 @@ usr/include
 usr/lib/libhdf5*.so
 usr/lib/libhdf5*.settings
 usr/lib/libhdf5*.a
+usr/bin/h5c++
+usr/bin/h5cc
+usr/bin/h5fc

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Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit d133b67f780304b509a518f194abcab9424bcef5
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Tue Mar 15 00:14:00 2011 +0100

Use the mpicxx instead of mpiCC

diff --git a/debian/rules b/debian/rules
index 0fb3172..2c23e62 100755
--- a/debian/rules
+++ b/debian/rules
@@ -133,7 +133,7 @@ configure-stamp-mpich2: configure-stamp-debian
 # configure version with mpich2
cd debian/build-mpich2  FCFLAGS=-I/usr/lib/mpich2/include/ 
CFLAGS=$(CFLAGS) CXXFLAGS=$(CXXFLAGS) FFLAGS=$(FFLAGS) \
LDFLAGS=-L/usr/lib/mpich2/lib/ CC=mpicc.mpich2 \
-   CXX=mpiCC.mpich2 F9X=mpif90.mpich2 
RUNPARALLEL=/usr/bin/mpirun.mpich2 \
+   CXX=mpicxx.mpich2 F9X=mpif90.mpich2 
RUNPARALLEL=/usr/bin/mpirun.mpich2 \
../../configure $(CONFIGURE_FLAGS) --enable-fortran \
--enable-parallel=yes
touch $@

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Hierarchical Data Format 5 (HDF5)

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[SCM] hdf5 branch, upstream, updated. upstream/1.8.4-patch1-79-gbfcb1ff

2011-11-16 Thread Sylvestre Ledru
The following commit has been merged in the upstream branch:
commit e602f9b5b31a9d0da5271e4a996962306365260b
Author: Sylvestre Ledru sylvestre.le...@scilab.org
Date:   Fri Feb 25 18:41:18 2011 +0100

Fix the upgrade process

diff --git a/debian/control.in b/debian/control.in
index d21e512..639178e 100644
--- a/debian/control.in
+++ b/debian/control.in
@@ -16,9 +16,10 @@ Package: libhdf5-serial-@VERSION@
 Section: libs
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3,
+ libhdf5-1.8.4, libhdf5-serial-1.8.4
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.3
+Replaces: libhdf5-1.8.3, libhdf5-1.8.4, libhdf5-serial-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -47,9 +48,10 @@ Section: libs
 Priority: extra
 Architecture: @ARCHS@
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3,
+ libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.3
+Replaces: libhdf5-1.8.3, libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI 
version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of
@@ -79,9 +81,10 @@ Section: libs
 Priority: extra
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3
+Conflicts: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@, libhdf5-1.8.3, 
+ libhdf5-1.8.4,  libhdf5-openmpi-1.8.4
 Provides: libhdf5-@VERSION@, libhdf5-@MAJOR_VERSION@
-Replaces: libhdf5-1.8.3
+Replaces: libhdf5-1.8.3, libhdf5-1.8.4, libhdf5-openmpi-1.8.4
 Description: Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version
  HDF5 is a file format and library for storing scientific data. 
  HDF5 was designed and implemented to address the deficiencies of

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