Your message dated Tue, 25 Oct 2011 12:02:31 +0000
with message-id <e1rifib-0005bo...@franck.debian.org>
and subject line Bug#644134: fixed in netcdf 1:4.1.1-6
has caused the Debian Bug report #644134,
regarding libhdf5 cannot open files after NetCDF's nc_close has been called
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
644134: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=644134
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libhdf5-serial-dev
Version: 1.8.4-patch1-3
Severity: serious
Hello,
[I'm not quite sure if this should be filed against netcdf instead, or
against both, I'll leave it up to you]
quite simply, after you close a NetCDF file you can't open HDF5 files
anymore. This is a short test case that consistently reproduces the
issue for me:
// Build with:
// g++ -o test-nch5 test-nch5.cc -lnetcdf_c++ -lnetcdf -lhdf5_cpp -lhdf5
// See
http://hdf-forum.184993.n3.nabble.com/nc-close-causes-problems-for-H5Fopen-td1019191.html
#include <H5Cpp.h>
#include <netcdfcpp.h>
int main(int argc, const char* argv[])
{
try {
NcFile nc("test-nch5-data.nc", NcFile::Replace);
// Comment out the next line to be able to open the file
nc.close();
H5::H5File h5("test-nch5-data.h5", H5F_ACC_TRUNC);
} catch (H5::FileIException& e) {
e.printError(stderr);
return 1;
}
return 0;
}
The problem also shows when existing files are opened read only. The
test case has a link to an hdf-forum post about this same problem, but
had no answers as far as I can see.
I am the author of a software that has to deal both with NetCDF and with
HDF5 files, and this is quite a killer :(
Ciao,
Enrico
-- System Information:
Debian Release: wheezy/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 3.0.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages libhdf5-serial-dev depends on:
ii libhdf5-serial-1.8.4 1.8.4-patch1-3
ii libjpeg8-dev [libjpeg-dev] 8c-2
ii zlib1g-dev 1:1.2.3.4.dfsg-3
libhdf5-serial-dev recommends no packages.
Versions of packages libhdf5-serial-dev suggests:
pn libhdf5-doc <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: netcdf
Source-Version: 1:4.1.1-6
We believe that the bug you reported is fixed in the latest version of
netcdf, which is due to be installed in the Debian FTP archive:
libnetcdf-dev_4.1.1-6_i386.deb
to main/n/netcdf/libnetcdf-dev_4.1.1-6_i386.deb
libnetcdf6_4.1.1-6_i386.deb
to main/n/netcdf/libnetcdf6_4.1.1-6_i386.deb
netcdf-bin_4.1.1-6_i386.deb
to main/n/netcdf/netcdf-bin_4.1.1-6_i386.deb
netcdf-dbg_4.1.1-6_i386.deb
to main/n/netcdf/netcdf-dbg_4.1.1-6_i386.deb
netcdf-doc_4.1.1-6_all.deb
to main/n/netcdf/netcdf-doc_4.1.1-6_all.deb
netcdf_4.1.1-6.diff.gz
to main/n/netcdf/netcdf_4.1.1-6.diff.gz
netcdf_4.1.1-6.dsc
to main/n/netcdf/netcdf_4.1.1-6.dsc
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 644...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Francesco Paolo Lovergine <fran...@debian.org> (supplier of updated netcdf
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Tue, 25 Oct 2011 13:33:23 +0200
Source: netcdf
Binary: netcdf-doc libnetcdf6 netcdf-dbg libnetcdf-dev netcdf-bin
Architecture: source all i386
Version: 1:4.1.1-6
Distribution: unstable
Urgency: low
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Changed-By: Francesco Paolo Lovergine <fran...@debian.org>
Description:
libnetcdf-dev - Development kit for NetCDF
libnetcdf6 - An interface for scientific data access to large binary data
netcdf-bin - Programs for reading and writing NetCDF files
netcdf-dbg - debugging symbols for NetCDF
netcdf-doc - Documentation for NetCDF
Closes: 618967 630564 642957 643445 643894 644134
Changes:
netcdf (1:4.1.1-6) unstable; urgency=low
.
* Moved repository to git.
* Changed debian/control RCS urls.
* Bumped policy to 3.9.2, without changes.
* Now set minimal debhelper level to 8.
* Source format maintained to 1.0 with source/format support. Quilt support
is still done at debian/rules level with tarball packaging style.
* Added patch `noshutdown' to avoid closing HDF5 library. Thanks Enrico and
others.
(closes: #644134)
* The rebuild causes regeneration of .mod files with current default Fortran
compiler. This is only a side effect, but someone should allow managing
that in
a proper way instead :-/
(closes: #618967, #643894, #642957, #630564)
* Fixed build error with a simple new patch `dumplib'. Thanks Enrico.
(closes: #643445)
* Changed long description for netcdf documentation.
Checksums-Sha1:
fc3fafd72150d6f66f8e1f72c82dff36af0adcd0 1564 netcdf_4.1.1-6.dsc
bec41df4e92e0212b2631907842f3906a10cf6d7 255912 netcdf_4.1.1-6.diff.gz
f39cee196897bfcb47140ae1986b58f25e3033a5 4676606 netcdf-doc_4.1.1-6_all.deb
9a4426cd2d0e6256b9b106cb4db62410b94956d4 537658 libnetcdf6_4.1.1-6_i386.deb
5deaa1dafaca1d1283c8c82ce41469a86238908b 990196 netcdf-dbg_4.1.1-6_i386.deb
108b1270f77a81d5938b81e1343900df449bca00 664236 libnetcdf-dev_4.1.1-6_i386.deb
4880b7914c3fcd0c578a994f448d0716134c94b2 197662 netcdf-bin_4.1.1-6_i386.deb
Checksums-Sha256:
17c0b2708a7519f1a6743b128b261f3e58cefdc366649b97d544d7908839e7b5 1564
netcdf_4.1.1-6.dsc
305e2ce5efe98bf64424f6a9bedd9238aba60e0c2a85359d45bb6b856c46968d 255912
netcdf_4.1.1-6.diff.gz
2cdade0cc13ffa2491830627d8409d5f98316942f9f05c1b6424da6a3245595c 4676606
netcdf-doc_4.1.1-6_all.deb
b1fa2d734323f715a366a9bb6d6a78260d5a76e9ba6260c5e0abf977cfae0002 537658
libnetcdf6_4.1.1-6_i386.deb
9888b44a5c63af4c5c791c75501a6d8671bfe15ff6b30592ccf4ccf42a4171a9 990196
netcdf-dbg_4.1.1-6_i386.deb
5e6eb79041d422647ac3f337ab8bcfd68e42dff795456cfabaf7c0adae6a6241 664236
libnetcdf-dev_4.1.1-6_i386.deb
14ba3c299dcec1185fe9d14e76418cd4ec720ccfd5c8d5ac30684eb1c138a3e5 197662
netcdf-bin_4.1.1-6_i386.deb
Files:
2c8764e4a0944954cb0479873bc39ebf 1564 science optional netcdf_4.1.1-6.dsc
f98c3d5e911d48fac56715f9883559dc 255912 science optional netcdf_4.1.1-6.diff.gz
91db9e3b2311cc069275d7a1df1f6080 4676606 doc optional
netcdf-doc_4.1.1-6_all.deb
cd0a296a603daaf64db70396d8fc6e01 537658 libs optional
libnetcdf6_4.1.1-6_i386.deb
3b787182befb270a7fc8bb2043774521 990196 debug extra netcdf-dbg_4.1.1-6_i386.deb
c3d6a091c5fb5a4e8ae2f03dbe81bad3 664236 libdevel optional
libnetcdf-dev_4.1.1-6_i386.deb
09b5351687aa340acefe44f130212ccc 197662 science optional
netcdf-bin_4.1.1-6_i386.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)
iEYEARECAAYFAk6mokQACgkQpFNRmenyx0eNVACg3bwR465/R68lYi8Tj/3DbZGE
n0oAoPUflT25FX5/WmKkFViytPREQn/1
=feLL
-----END PGP SIGNATURE-----
--- End Message ---
_______________________________________________
Pkg-grass-devel mailing list
Pkg-grass-devel@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel
