Your message dated Sun, 25 Nov 2012 13:47:55 +0000 with message-id <e1tccyt-0003tf...@franck.debian.org> and subject line Bug#693610: fixed in hdf5 1.8.9-1~exp2 has caused the Debian Bug report #693610, regarding requires rebuild on every hd5 version change to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 693610: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=693610 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: pytables Version: 2.3.1-3 Severity: important pytables hardcodes the hdf5 version number it was built against into its binaries. When the hdf version changes it then aborts with following error message: Warning! ***HDF5 library version mismatched error*** The HDF5 header files used to compile this application do not match the version used by the HDF5 library to which this application is linked. Data corruption or segmentation faults may occur if the application continues. This can happen when an application was compiled by one version of HDF5 but linked with a different version of static or shared HDF5 library. You should recompile the application or check your shared library related settings such as 'LD_LIBRARY_PATH'. 'HDF5_DISABLE_VERSION_CHECK' environment variable is set to 1, application will continue at your own risk. Headers are 1.8.8, library is 1.8.9 the error message originates from libhdf which was obviously built with the correct headers, see H5check_version. this can currently be seen with a minimal pytables script in experimental with hdf 1.8.9 which is api compatible with 1.8.8.
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--- Begin Message ---Source: hdf5 Source-Version: 1.8.9-1~exp2 We believe that the bug you reported is fixed in the latest version of hdf5, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 693...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sylvestre Ledru <sylves...@debian.org> (supplier of updated hdf5 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Sun, 25 Nov 2012 11:15:21 +0100 Source: hdf5 Binary: libhdf5-7 libhdf5-7-dbg libhdf5-dev libhdf5-serial-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich2-7 libhdf5-mpich2-dev libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools Architecture: source all amd64 Version: 1.8.9-1~exp2 Distribution: experimental Urgency: low Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org> Changed-By: Sylvestre Ledru <sylves...@debian.org> Description: hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 ve libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 versio libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 ve libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI versi libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI v libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitio Closes: 693610 Changes: hdf5 (1.8.9-1~exp2) experimental; urgency=low . * Skip the inclusion of C++ when dealing with parallel HDF5 Thanks to Mike Miller, Rafael Laboissiere & Sebastien Villemot . [ Julian Taylor ] * relax-version-check.patch: don't check the compile time patch version at runtime, this saves us full transitions when it is still compatible. 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