Your message dated Tue, 20 Oct 2015 12:19:02 +0200
with message-id <98bb8420244fb94de52601eba6f60...@xs4all.nl>
and subject line Re: Bug#802321: gdal-bin: NetCDF-4 / HDF5 support broken in
recent gdal
has caused the Debian Bug report #802321,
regarding gdal-bin: NetCDF-4 / HDF5 support broken in recent gdal
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
802321: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=802321
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gdal-bin
Version: 1.11.2+dfsg-3+b2
Severity: grave
Justification: causes non-serious data loss
NetCDF-4 format is not properly recognized in recent gdal (libgdal1i ?).
How to reproduce the bug:
--------------------------
the attached file JEJK_topoC9k_ZABA10mHbpv.nc is of NetCDF-4 / HDF5 format,
see ncdump or h5dump output
$ ncdump -h JEJK_topoC9k_ZABA10mHbpv.nc
netcdf JEJK_topoC9k_ZABA10mHbpv {
dimensions:
x = 501 ;
y = 601 ;
variables:
double x(x) ;
x:long_name = "x" ;
x:actual_range = -546000., -541000. ;
double y(y) ;
y:long_name = "y" ;
y:actual_range = -1073000., -1067000. ;
float z(y, x) ;
z:long_name = "z" ;
z:_FillValue = NaNf ;
z:actual_range = 2.38614749908447, 11.5756139755249 ;
// global attributes:
:Conventions = "COARDS, CF-1.5" ;
:title = "Produced by grdreformat" ;
:history = "grdreformat CRJK_topoC9c_ZABAGED10m.grd
Jesenik_topoC9_ZABAGED10mBpv.nc -R-546000/-541000/-1073000/-1067000" ;
:GMT_version = "5.1.2 (r14256) [64-bit]" ;
}
$ ncdump -k JEJK_topoC9k_ZABA10mHbpv.nc
netCDF-4
$ h5dump -n JEJK_topoC9k_ZABA10mHbpv.nc
HDF5 "JEJK_topoC9k_ZABA10mHbpv.nc" {
FILE_CONTENTS {
group /
dataset /x
dataset /y
dataset /z
}
}
----------------------------
Now see what about gdal:
$ gdalinfo JEJK_topoC9k_ZABA10mHbpv.nc
ERROR 4: `HDF5:"JEJK_topoC9k_ZABA10mHbpv.nc":z' does not exist in the file
system,
and is not recognised as a supported dataset name.
gdalinfo failed - unable to open 'JEJK_topoC9k_ZABA10mHbpv.nc'.
The support for NetCDF-4 / HDF-5 output is broken too:
$ gmt grdreformat JEJK_topoC9k_ZABA10mHbpv.grd JEJK_topoC9k_ZABA10mHbpv.xnc=nf
grdreformat (GMTAPI_Export_Grid): NetCDF: HDF error
[JEJK_topoC9k_ZABA10mHbpv.xnc=nf]
[Session gmt (0)]: Error returned from GMT API: GMT_GRID_WRITE_ERROR (19)
Previous gdal version (1.11.1 perhaps? - in stretch) worked well in this
respect.
Regards,
Otakar
-- System Information:
Debian Release: stretch/sid
APT prefers testing
APT policy: (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.2.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=cs_CZ.UTF-8, LC_CTYPE=cs_CZ.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages gdal-bin depends on:
ii libc6 2.19-22
ii libgcc1 1:5.2.1-22
ii libgdal1i [libgdal.so.1-1.11.2] 1.11.2+dfsg-3+b2
ii libstdc++6 5.2.1-22
gdal-bin recommends no packages.
Versions of packages gdal-bin suggests:
ii python-gdal 1.11.2+dfsg-3+b2
-- no debconf information
--- End Message ---
--- Begin Message ---
notfound 802321 gdal/1.11.2+dfsg-3
thanks
Hi Otakar,
Good to hear that the netcdf package rebuilt for the hdf5 transition
resolves the issue.
The dependencies generated using the symbols verions generally don't
include the binNMU version, so we can't easily prevent this kind of
issue with just dependencies.
This is one of the primary reasons why transitions to new library
version are coordinated with the release team to have all or most
packages migrate to testing at the same time.
Kind Regards,
Bas
--- End Message ---
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