[DRE-maint] Bug#921901: ruby-voight-kampff: FTBFS (expected: < 0.002, got: 0.002076509001199156)

2019-03-13 Thread Andreas Tille
Hi,

I tried to reproduce this issue and need to admit I can not reproduce
that timing problem (I would assume that might depend from the hardware
used for the build.  However

  apt-get source ruby-voight-kampff
  cd ruby-voight-kampff
  pdebuild

leaded to:

...
┌──┐
│ Run tests for ruby2.5 from debian/ruby-tests.rake│
└──┘

RUBYLIB=/build/ruby-voight-kampff-1.1.3/debian/ruby-voight-kampff/usr/lib/ruby/vendor_ruby:.
 
GEM_PATH=debian/ruby-voight-kampff/usr/share/rubygems-integration/all:/var/lib/gems/2.5.0:/usr/lib/x86_64-linux-gnu/rubygems-integration/2.5.0:/usr/share/rubygems-integration/2.5.0:/usr/share/rubygems-integration/all
 ruby2.5 -S rake -f debian/ruby-tests.rake
rspec

An error occurred while loading 
./spec/controllers/replicants_controller_spec.rb.
Failure/Error: require 'rspec/rails'

NameError:
  uninitialized constant Capybara::VERSION
# ./spec/spec_helper.rb:7:in `'
# ./spec/controllers/replicants_controller_spec.rb:1:in `'

An error occurred while loading ./spec/lib/voight_kampff/rack_request_spec.rb.
Failure/Error: Combustion.initialize! :action_controller

RuntimeError:
  Application has been already initialized.
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/application.rb:360:in
 `initialize!'
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/railtie.rb:190:in
 `public_send'
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/railtie.rb:190:in
 `method_missing'
# 
/usr/share/rubygems-integration/all/gems/combustion-1.0.0/lib/combustion.rb:32:in
 `initialize!'
# ./spec/spec_helper.rb:5:in `'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:291:in
 `require'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:291:in
 `block in require'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:257:in
 `load_dependency'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:291:in
 `require'
# ./spec/lib/voight_kampff/rack_request_spec.rb:1:in `'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:285:in
 `load'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:285:in
 `block in load'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:257:in
 `load_dependency'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:285:in
 `load'

An error occurred while loading ./spec/lib/voight_kampff/test_spec.rb.
Failure/Error: Combustion.initialize! :action_controller

RuntimeError:
  Application has been already initialized.
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/application.rb:360:in
 `initialize!'
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/railtie.rb:190:in
 `public_send'
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/railtie.rb:190:in
 `method_missing'
# 
/usr/share/rubygems-integration/all/gems/combustion-1.0.0/lib/combustion.rb:32:in
 `initialize!'
# ./spec/spec_helper.rb:5:in `'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:291:in
 `require'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:291:in
 `block in require'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:257:in
 `load_dependency'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:291:in
 `require'
# ./spec/lib/voight_kampff/test_spec.rb:1:in `'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:285:in
 `load'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:285:in
 `block in load'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:257:in
 `load_dependency'
# 
/usr/share/rubygems-integration/all/gems/activesupport-5.2.2/lib/active_support/dependencies.rb:285:in
 `load'

An error occurred while loading ./spec/lib/voight_kampff_spec.rb.
Failure/Error: Combustion.initialize! :action_controller

RuntimeError:
  Application has been already initialized.
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/application.rb:360:in
 `initialize!'
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/railtie.rb:190:in
 `public_send'
# 
/usr/share/rubygems-integration/all/gems/railties-5.2.2/lib/rails/railtie.rb:190:in
 `method_missing'
# 

[DRE-maint] Bug#890691: ruby-bio FTBFS with ruby 2.5

2018-07-16 Thread Andreas Tille
Hi,

I'd love to fix this bug since this package is of relevance for Debian
Med.  It seems to boil down to

   Error: test_na_seqstat(Bio::TestShellPluginSeq): ArgumentError: incomplete 
format specifier; use %% (double %) instead

which sounds pretty easy for somebody who speaks Ruby (which is not the
case for me).  Could anybody provide a patch (or just do a team upload
of this package which I updated in Git to latest upstream since Mai)?

Thanks a lot

Andreas.

-- 
http://fam-tille.de

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[DRE-maint] Please help to upgrade ruby-bio

2018-05-02 Thread Andreas Tille
Hi,

I've commited an update of the latest upstream version to Git[1] but the
runtime tests end up in an error which is beyond my (non-existing) Ruby
knowledge:

...
===
...
E
===
Error: test_na_seqstat(Bio::TestShellPluginSeq): ArgumentError: incomplete 
format specifier; use %% (double %) instead
/build/ruby-bio-1.5.1/lib/bio/shell/plugin/seq.rb:85:in `format'
/build/ruby-bio-1.5.1/lib/bio/shell/plugin/seq.rb:85:in `block in seqstat'
/build/ruby-bio-1.5.1/lib/bio/shell/plugin/seq.rb:84:in `each'
/build/ruby-bio-1.5.1/lib/bio/shell/plugin/seq.rb:84:in `seqstat'
/build/ruby-bio-1.5.1/test/unit/bio/shell/plugin/test_seq.rb:118:in 
`test_na_seqstat'
 115:   $str << obj.to_s
 116: end
 117:   end
  => 118:   seqstat(naseq)
 119:   undef puts
 120:   alias puts puts_orig
 121:   assert_equal(output, $str)
===
...


Feel free to simply upload if you found a fix to make this build.

Kind regards

  Andreas.


[1] https://salsa.debian.org/ruby-team/ruby-bio

-- 
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[DRE-maint] Please ad me to Gitlab project

2018-05-01 Thread Andreas Tille
Hi,

I intended to commit some changes to ruby-bio but I can't since the
Salsa migration.  Please add me to the project (sorry, I have not found
any button to ask for membership on the Gitlab interface).

Kind regards

 Andreas.

-- 
http://fam-tille.de

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