Your message dated Fri, 02 Mar 2018 16:19:46 +0000
with message-id <e1ernpo-0009sx...@fasolo.debian.org>
and subject line Bug#890691: fixed in ruby-crb-blast 0.6.9-1
has caused the Debian Bug report #890691,
regarding ruby-bio FTBFS with ruby 2.5
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
890691: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=890691
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: ruby-bio
Version: 1.5.0-2
Severity: serious
Tags: buster sid
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/ruby-bio.html
...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Run tests for ruby2.5 from debian/ruby-tests.rb │
└──────────────────────────────────────────────────────────────────────────────┘
RUBYLIB=/build/1st/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby:.
GEM_PATH=debian/ruby-bio/usr/share/rubygems-integration/all:/var/lib/gems/2.5.0:/usr/lib/x86_64-linux-gnu/rubygems-integration/2.5.0:/usr/share/rubygems-integration/2.5.0:/usr/share/rubygems-integration/all
ruby2.5 debian/ruby-tests.rb
Loaded suite debian/ruby-tests
Started
...............................................................................
.................................................................../build/1st/ruby-bio-1.5.0/test/unit/bio/test_alignment.rb:631:
warning: constant ::Fixnum is deprecated
/build/1st/ruby-bio-1.5.0/test/unit/bio/test_alignment.rb:633: warning:
constant ::Fixnum is deprecated
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.............................................................../build/1st/ruby-bio-1.5.0/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:154:
warning: constant ::Fixnum is deprecated
/build/1st/ruby-bio-1.5.0/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:154:
warning: constant ::Fixnum is deprecated
................
...............................................................................
........................................................../build/1st/ruby-bio-1.5.0/lib/bio/db/soft.rb:220:
warning: constant ::Fixnum is deprecated
/build/1st/ruby-bio-1.5.0/lib/bio/db/soft.rb:226: warning: constant ::Fixnum is
deprecated
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...............................................................................
.O
===============================================================================
test randomly failing skipped
[test_randomize_equiprobability(Bio::TestSequenceCommon::TestSequenceCommonRandomizeChi2)]
/build/1st/ruby-bio-1.5.0/test/unit/bio/sequence/test_common.rb:324:in
`test_randomize_equiprobability'
===============================================================================
O
===============================================================================
test randomly failing skipped
[test_randomize_with_hash_equiprobability(Bio::TestSequenceCommon::TestSequenceCommonRandomizeChi2)]
/build/1st/ruby-bio-1.5.0/test/unit/bio/sequence/test_common.rb:330:in
`test_randomize_with_hash_equiprobability'
===============================================================================
...............................................................................
........................................................E
===============================================================================
Error: test_na_seqstat(Bio::TestShellPluginSeq): ArgumentError: incomplete
format specifier; use %% (double %) instead
/build/1st/ruby-bio-1.5.0/lib/bio/shell/plugin/seq.rb:85:in `format'
/build/1st/ruby-bio-1.5.0/lib/bio/shell/plugin/seq.rb:85:in `block in seqstat'
/build/1st/ruby-bio-1.5.0/lib/bio/shell/plugin/seq.rb:84:in `each'
/build/1st/ruby-bio-1.5.0/lib/bio/shell/plugin/seq.rb:84:in `seqstat'
/build/1st/ruby-bio-1.5.0/test/unit/bio/shell/plugin/test_seq.rb:118:in
`test_na_seqstat'
115: $str << obj.to_s
116: end
117: end
=> 118: seqstat(naseq)
119: undef puts
120: alias puts puts_orig
121: assert_equal(output, $str)
===============================================================================
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Finished in 15.8237365 seconds.
------
3849 tests, 21478 assertions, 0 failures, 1 errors, 0 pendings, 2 omissions, 0
notifications
99.974% passed
------
243.24 tests/s, 1357.33 assertions/s
ERROR: Test "ruby2.5" failed. Exiting.
dh_auto_install: dh_ruby --install /build/1st/ruby-bio-1.5.0/debian/ruby-bio
returned exit code 1
make[1]: *** [debian/rules:32: override_dh_auto_install] Error 1
--- End Message ---
--- Begin Message ---
Source: ruby-crb-blast
Source-Version: 0.6.9-1
We believe that the bug you reported is fixed in the latest version of
ruby-crb-blast, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 890...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated
ruby-crb-blast package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 02 Mar 2018 08:03:29 -0800
Source: ruby-crb-blast
Binary: ruby-crb-blast
Architecture: source
Version: 0.6.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Ruby Extras Maintainers
<pkg-ruby-extras-maintainers@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
ruby-crb-blast - Run conditional reciprocal best blast
Closes: 890691
Changes:
ruby-crb-blast (0.6.9-1) unstable; urgency=medium
.
* New upstream release. Tests pass again. (Closes: #890691)
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ruby-crb-blast_0.6.9-1.debian.tar.xz
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Files:
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