Re: numpy status update and help requested

2021-01-03 Thread Daniel Dickman
On Sun, 11 Oct 2020, Daniel Dickman wrote: > I hope a lot of the work to be able to update numpy has now been done. > Just a short summary below of what's left. Here's an update on what's left before numpy can be updated to the newer python3-only versions: (1) These ports have unfinished

Re: UPDATE biology/py-biopython [Re: numpy status update and help requested]

2020-10-24 Thread Kurt Mosiejczuk
On Fri, Oct 16, 2020 at 05:57:16PM +0200, Martin Reindl wrote: > Am 16.10.20 um 08:58 schrieb Martin Reindl: > > On Sun, Oct 11, 2020 at 06:12:20PM -0400, Daniel Dickman wrote: > >> - biology/py-biopython > > Hello Daniel, > > attached is an update for biopython to 1.78. I did an complete

Re: numpy status update and help requested

2020-10-23 Thread Brian Callahan
Hi Daniel -- On Sunday, October 11, 2020 6:12 PM, Daniel Dickman wrote: > I hope a lot of the work to be able to update numpy has now been done. > Just a short summary below of what's left. > > I don't think it's super urgent to get numpy updated to a newer version at > this point. But there

Re: numpy status update and help requested

2020-10-23 Thread Daniel Dickman
On Sat, 24 Oct 2020, Brian Callahan wrote: > Hi Daniel -- > > On Sunday, October 11, 2020 6:12 PM, Daniel Dickman > wrote: > > > I hope a lot of the work to be able to update numpy has now been done. > > Just a short summary below of what's left. > > > > I don't think it's super urgent to

Re: UPDATE biology/py-biopython [Re: numpy status update and help requested]

2020-10-16 Thread Martin Reindl
Am 16.10.20 um 08:58 schrieb Martin Reindl: > On Sun, Oct 11, 2020 at 06:12:20PM -0400, Daniel Dickman wrote: >> - biology/py-biopython > > Hello Daniel, > > attached is an update for biopython to 1.78. I did an complete overhaul of > the port including switch to python3 with quirks and conflict

UPDATE biology/py-biopython [Re: numpy status update and help requested]

2020-10-16 Thread Martin Reindl
On Sun, Oct 11, 2020 at 06:12:20PM -0400, Daniel Dickman wrote: > - biology/py-biopython Hello Daniel, attached is an update for biopython to 1.78. I did an complete overhaul of the port including switch to python3 with quirks and conflict markers. Tests still run quite alright on amd64.

numpy status update and help requested

2020-10-11 Thread Daniel Dickman
I hope a lot of the work to be able to update numpy has now been done. Just a short summary below of what's left. I don't think it's super urgent to get numpy updated to a newer version at this point. But there are a few nice performance improvements, cleanups and bug fixes that might be nice