Updates:
Status: WorkingAsIntended
Comment #1 on issue 163 by ken...@google.com: protoc cpp invalid #include
links
http://code.google.com/p/protobuf/issues/detail?id=163
protoc generates includes relative to the top of your proto_path. Try:
protoc --proto_path=./Test/Foo --cpp_out=../Test ./Test/Foo/TestLeaf.proto
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