RE: Expression RDF note

2012-09-17 Thread Michael Miller
ptember 15, 2012 2:32 PM > To: Chisato Yamasaki > Cc: Michel Dumontier; Michael Miller; HCLS; > expression...@googlegroups.com; ilpuccio.f...@gmail.com > Subject: Re: Expression RDF note > > Perhaps the oldest use of 'gene expression' refers to in-situ imaging > exper

Re: Expression RDF note

2012-09-15 Thread Suzanna Lewis
Perhaps the oldest use of 'gene expression' refers to in-situ imaging experiments of whole organisms, embryos, tissues, stages etc (pre-dates both chip and RNAseq experiments). In situs are still extremely common in the lab. And the name 'gene expression' for these is accurately descriptive. W

Re: Expression RDF note

2012-09-10 Thread chisato yamasaki
# I am sending the previous email again as I met some messages; Hi, I am working on human gene expression database, H-ANGEL. e.g.) http://www.h-invitational.jp/hinv/h-angel/wge_server.cgi?gpid=HIX0005064 where we have rather classical gene expression data, such as micorarray, DNA chips, ESTs, BodyM

Re: Expression RDF note

2012-09-10 Thread Chisato Yamasaki
Hi, I am working on human gene expression database, H-ANGEL. e.g.) http://www.h-invitational.jp/hinv/h-angel/wge_server.cgi?gpid=HIX0005064 where we have rather classical gene expression data, such as micorarray, DNA chips, ESTs, BodyMaps, etc. We are planning to make this data into RDFs, and in

RE: Expression RDF note

2012-09-10 Thread Michael Miller
er; expression...@googlegroups.com; Michael Miller; HCLS; chisato-yamas...@aist.go.jp; Lin MD, Simon *Subject:* Re: Expression RDF note I can provide support for ngs. Currently I'm working on RnaSeq and our lab start from raw samples so I have the chance, I'm sure you too, to have an overvi

Re: Expression RDF note

2012-09-10 Thread Helena Deus
groups.com; Michael Miller; HCLS; > chisato-yamas...@aist.go.jp; Lin MD, Simon > Subject: Re: Expression RDF note > > > > I can provide support for ngs. Currently I'm working on RnaSeq and our lab > start from raw samples so I have the chance, I'm sure you to

Re: Expression RDF note

2012-09-10 Thread Michel Dumontier
* Helena Deus > *Cc:* Michel Dumontier; expression...@googlegroups.com; Michael Miller; > HCLS; chisato-yamas...@aist.go.jp; Lin MD, Simon > *Subject:* Re: Expression RDF note > > ** ** > > I can provide support for ngs. Currently I'm working on RnaSeq and our > lab start fro

RE: Expression RDF note

2012-09-10 Thread Lin MD, Simon
lena Deus Cc: Michel Dumontier; expression...@googlegroups.com; Michael Miller; HCLS; chisato-yamas...@aist.go.jp; Lin MD, Simon Subject: Re: Expression RDF note I can provide support for ngs. Currently I'm working on RnaSeq and our lab start from raw samples so I have the chance, I'

Re: Expression RDF note

2012-09-10 Thread M. Scott Marshall
Hi Michel, If someone could invent a timezone compressor, it would be very handy. As you know, Asia-California-Europe calls are impossible without causing pain to participants from one timezone. As you may recall, I organized several followup telcos for followup work on Biohackathon2011. Despite

Re: Expression RDF note

2012-09-10 Thread Helena Deus
All, we discussed, at some point, that NGS data should be supported by the note. should we call it transcriptomic representation note instead? both the term "gene expression" and the note itself are still associated with microarrays, a completelly different strategy from NGS. but both are rel

RE: Expression RDF note

2012-09-10 Thread Lin MD, Simon
The W3C gene expression note is also of interest to me. I would be happy to contribute a use case of Gene Screening from Next Generation Sequencing. What is the time line of this project? I might not be able to work on it much till the end of Sept. With regard to meetings, I am open and flexible