[PyMOL] Pymol and Raster3D

2002-07-28 Thread joergli
Hello I know I can use the Raster3d output from molscript to view and render it in pymol. But is there a way to output a pymol-generated structure in r3d-format for rendering with Raster3d's render program? (It's because render is a lot faster than pymol's built-in raytracer...) thanks joerg

[PyMOL] Secondary structure assignments

2002-07-28 Thread Kelley Moremen
Dear Pymol users, I am very pleased with Pymol as a visualization tool for the generation of publication quality images, but I am having a problem with one aspect of the problem. I am working with several PDB files that do not have embedded secondary structure assignments. I have been trying to

Re: [PyMOL] Secondary structure assignments

2002-07-28 Thread Nathaniel Echols
programs. So I am in search of a solution. Can one manually create a secondary structure assignment matrix to insert into the PDB file? I must admit that as a novice I do not understand the formatting of the secondary structure matrices that I have seen embedded in some PDB files. Is