Dear PyMol users,
I've got an annoying effect under RedHat 9.0 with a Nvidia Quadro4 980 XGL
graphics card, the most recent Nvidia driver and Stereographics glasses
emitter: occasionally, the hardware stereo is inverted (back appears in front
and vice versa) and doesn't come back to normal
I still do not understand your stereo parameters: the
stereo_angle should
define the rotation (around the y-axis) between the pictures
for the left and
right eye, whereas the stereo_shift should define whether the
origin or
midpoint of the picture is within the plane of the screen or
http://pymol.sourceforge.net/faq.html#CITE
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
Warren L. DeLano wrote:
1) get_area selection command will return the effective surface area
of the dots that you would see from show dots, selection. This is a
discrete approximation -- not an exact calculation.
2) you can use the dot_solvent setting to control whether you get
solvent
When making a movie It would be cool if you could set way-points to create a
sophisticated tour
of your molecule.
Each way-point would be a different view of your molecule.
Then you could specify the number of frames between any two way-points
(views). Each frame
would be a specified amount
slo...@mail.med.upenn.edu:
does anyone know how to color only the ribbon of a polypeptide, while
not coloring the CA atoms when using spheres?
duplicate your polypeptide, show the ribbon of one instance and atoms of
another one
-igor
Hi pymol community. Two questions.
- The dss algorithm is great, a very quick way to assign secondary
structure. Is there a way of conserving the information when saving the
pdb? Sometimes it's nice to edit the assignment.
- In contrast to versions 0.9 and earlier, version 0.93 connects the CA
