Re: [PyMOL] PyMOL tutorial (moved and slightly updated)

2004-08-23 Thread Michael Banck
On Fri, Aug 20, 2004 at 09:37:00AM -0700, chuit...@interchange.ubc.ca wrote: In any case, you ask a useful question: I too would like to know what license, if any, is granted by the tutorial's authors. If released under an appropriate license, it could be modified for Linux/Unix/MacOSX

[PyMOL] Fast Coloring

2004-08-23 Thread Charles Moad
I am working on a plugin that entails coloring residues based on a value. Right now creating a new color for each residue and setting the color corresponding works, BUT it is very inefficient and takes more than a tolerable amount of time to display. Is there a better approach? It is

[PyMOL] raytraced labels

2004-08-23 Thread Ingo P. Korndoerfer
hello everybody, shouldn't it be possible to extract the proper rotation for the cgo labels from the view matrix ? i have been trying arount a few things, but was not so succesful so far. my idea was, to - extract the coordinates of the atom i want from the pdb file. either from within pymol

[PyMOL] rms commands

2004-08-23 Thread Andreas Förster
Hey all, just the other day I discovered a nifty command in pymol. rms_cur selection1, selection2 determines the deviation between two (previously aligned) selections without doing a fit. Here's what I do: rms_cur (object1 and i. 20:29 and (name c,o,n,ca)), (object2 and i. 30:39 and (name

[PyMOL] surface/grid questions

2004-08-23 Thread castilho
Dear all, My name is Marcelo and I am a basic-level pymol user. I work with docking programs and I am trying to make pymol our default program for analysing docking results...this brings me to some questions: Is it possible to colour protein surface according to Hydrogen donor/acceptor

Re: [PyMOL] raytraced labels

2004-08-23 Thread Robert Lucas
What I did so that I could use the labels command was read the coordinates in twice. One copy was used for display, the second copy had no atoms/representations displays, but instead I attatched labels to the atoms on the second copy and then moved these atoms around (and thusly the labels) till