[PyMOL] zoom size

2004-11-15 Thread Indraneel Majumdar
Hi, Is there a way to zoom by a fixed distance with respect to the viewport? Something like the window command in molscript, so that different molecules can be viewed/rendered at the same scale. Thanks, Indraneel Majumdar -- Univ of Texas SouthWestern Medical Center at Dallas Tel: 214-648-2499

Re: [PyMOL] pymol displays c alpha as nonbonded

2004-11-15 Thread Jules Jacobsen
Hi Matthew, You want: 'set ribbon_trace,1' or 'set cartoon_trace,1' Jules Matthew Bowler wrote: Dear All, I am trying display a c-alpha model in pymol (1qo1), when the file is opened all the atoms are displayed as non-bonded. Is there a way to tell pymol that this is a c-alpha trace an

[PyMOL] pymol displays c alpha as nonbonded

2004-11-15 Thread Matthew Bowler
Dear All, I am trying display a c-alpha model in pymol (1qo1), when the file is opened all the atoms are displayed as non-bonded. Is there a way to tell pymol that this is a c-alpha trace and display it as a cartoon? Many thanks in advance, Matt. Matthew Bowler MRC Dunn Human Nutrition Uni

[PyMOL] parameters for sculpt?

2004-11-15 Thread Morgan Ryan
Under the Build/sculpting/restraints menu in the new MacPymol beta, there are some options for sculpting, but they're greyed out. Are any of these options reachable through the menu or command line? Specifically, can Sculpt be tuned to retain bond length and perhaps bond angle, while permitting