Re: [PyMOL] Renumber protein segid

2005-06-29 Thread Joel Tyndall
Hi andrea, I have found an excellent add on tool for emacs which does a lot of renumbering stuff (on unix/linux) http://stein.bioch.dundee.ac.uk/~charlie/scripts/pdb-mode.html Cheers Joel Andrea Spitaleri wrote: Hi all, I couldn't find any command in pymol to renumber the segid of a prote

[PyMOL] Academic License

2005-06-29 Thread Douglas McKinney
We are interested in having Pymol installed and run on one of our computers in the lab. However, our lab IT says she needs more information on how the license works, and what the "subscription" entails. Douglas McKinney Biological Sciences Dept. Northern Illinois University. __

RE: [PyMOL] Renumber protein segid

2005-06-29 Thread Warren DeLano
Andrea, alter selection, segi='SEGI' sort for example alter 10-150/, segi='PRT1' alter 510-650/, segi='PRT2' sort Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco,

[PyMOL] Sum distances in loop via python script

2005-06-29 Thread tanrikul
Hi everybody, I am new to PyMol and scripting with Python, and I would be very grateful if anybody can help me. After loading serveral superposed molecules, I made a selection of some atoms as follows: from pymol import cmd cmd.select('sel01', ('elem c and not (neighbor elem n+o)') cmd.color (

[PyMOL] Renumber protein segid

2005-06-29 Thread Andrea Spitaleri
Hi all, I couldn't find any command in pymol to renumber the segid of a protein. Is there any way to do it? Regards andrea