Warren,
These commands (see below) go a long way toward solving the problem
of producing low resolution simple structures for my textbook
project. I have some questions:
The first command elicits an error:
PyMOLalter all,b=3D10
Alter-Error: Aborting on error. Assignment may be incomplete.
Sarina,
I'm not sure where that 3D10 is coming from -- it should simply be the
number 10:
alter all, b=10
map_new can take a selection as its fourth argument, so you could
generate an independent map for each subunit, show the surface, and
color it independently. It's also possible to color a
I've been trying to set the sphere_transparency for selections on my
protein, and I've tried the following:
PyMOL load test.pdb
PyMOL show spheres, HETATM
I've tried the following to change sphere_transparencies:
PyMOL set sphere_transparency,0.4,name COO
PyMOL cmd.set(sphere_transparency, 0.4,
pymol-users-ad...@lists.sourceforge.net wrote on 12/01/2005 05:46:26 PM:
Is it possible to change the sphere_transparency setting for individual
atoms?
Andrew Wollacott
It appears not, but you can change this setting for individual objects.
Create a new object containing only the atoms of
