RE: [PyMOL] Problem with crashing

2005-12-12 Thread Warren DeLano
Occasionally PyMOL experiences problems due to a variety of factors, some of which are internal to the program, and others which are environmental in nature. If you encounter trouble, PyMOL may have a bug, or your computer's OpenGL graphics system may be at fault. To help those that seek to hel

RE: [PyMOL] HETATM in pdb

2005-12-12 Thread Warren DeLano
Paul, rename object-name, force=1 will cause PyMOL to assign unique (though not necessarily sequential) atom names... Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Franci

[PyMOL] HETATM in pdb

2005-12-12 Thread Paul Wilhelm Elsinghorst
Hi, I was wondering if I can get PyMol to add consecutive numbers to the HETATM labels of my ligand. So I'd like to get this: > HETATM1 N1 PWE 1 0.459 60.194 72.834 1.00 0.00 N > HETATM2 N2 PWE 1 1.778 68.314 67.268 1.00 0.00 N > HETA

[PyMOL] Pymol plugins and DRM systems?

2005-12-12 Thread Andrew D. Fant
Has anyone looked into making pymol plugins work with any of the sundry distributed resource management systems (gridengine, lsf, pbs, condor, etc.)? I have a cluster that could make short work of a lot of computations that I want to visualize in pymol, but currently, that would mean installing

[PyMOL] Problem with crashing

2005-12-12 Thread bp240
Dear all, I have been using Pymol for a while now and have not had any stability issues before. However since I have purchased a new computer i64_84 platform the wonderful pymol has been crashing like crazy every few minutes. It is an inconvenience and I would really like to resolve the issue