Hello pymolers,
I'd like to display double bonds in a small molecule ligand bound to the
active centre of a protein. Of course, the ligand is non-standard, i.e.
pymol doesn't know about its chemical nature. Googling a bit, I found
that I can
set valence, 0.1
but this only display double
hello,
is it possible to define the gui and viewer positions on startup separately?
thanks,
marc
Hi,
I found out how to do ... something ... like this the other day.
Wulf et al,
I've had similar results to what you report even with a session file
created with the latest version of PyMol. You should first try what
Warren suggests. Then, if the specular highlights still look too
contrasty, you can try reducing the specular_intensity to about 0.2
and
Hello,
This is only my opinion right...
But it seems to me that converting hbonds into secondary structure
elements (helices, strands, paperclips...) can be tricky at the
boundaries when bonds are just too short or just the other side of the
correct angle.
To illustrate this with 1m6q (which is
