RE: [PyMOL] Problems with rendering and saving

2006-05-04 Thread Anne Mølgaard
Hi Andreas, Just for the record: Phase One P45 digital camera back for medium format cameras is 39 megapixels and has been shipping since December 2005. You can check their web site: http://www.phaseone.dk/Content/p1digitalbacks/P%2045.aspx It is a great camera, that takes amazing pictures :-)

Re: [PyMOL] Problems with rendering and saving

2006-05-04 Thread Andreas Forster
Hey Florian, I'd say it's a limitation of your graphics card. Others should correct me if I'm wrong. In any case, on my computer, I can write a 6400x4800 pixel2 file. >> PyMOL>png test >> ScenePNG: wrote 6400x4800 pixel image to file "test.png". A different question is why I or you would w

[PyMOL] Problems with rendering and saving

2006-05-04 Thread Florian Haberl
Hi, i`ll tried to render something for a poster: ray 6400,4800 png test doesn`t work: Scene-Warning: Maximum OpenGL viewport dimension exceeded. ScenePNG: wrote 4096x3072 pixel image to file "6400.png". Is this a known limitation or does it depend from the complexity of the protein/ object

Re: [PyMOL] Correcting protiein models

2006-05-04 Thread Praedor Atrebates
Thank you for getting back so quickly. I am not starting out from scratch, per se, I have protein models based upon a threading analysis conducted on my protein's amino sequence vs a large fold database. I did a psipred secondary structure prediction, used that as input to Threader 3.5, took

RE: [PyMOL] Correcting protiein models

2006-05-04 Thread Warren DeLano
Praedor, The sculpting capability in PyMOL is only intended and/or useful for handling conformational changes when starting from valid 3D geometries. If you are forming bonds or building molecules from scratch, then you'll need to use an external tool like OpenEye's Szybki or Schrodinger's Macro

[PyMOL] Correcting protiein models

2006-05-04 Thread Praedor Atrebates
I have produced several threading models of a protein (the app threader 3.5 can output pdb format models) I am studying. The models are OK for the most part but there are often odd gaps in which the peptide backbone has simply been "broken" and the ends separated by some distance - but they sho