[PyMOL] problems with multiple-conformation pdbs

2006-05-31 Thread martin weisel
Hi everybody, is there a way to switch between different models (frames) of a pdb-file containing multiple conformations (e.g. 1arj)? Switching the display between the conformers works fine with cmd.frame(), but atom-coordinates do not change (still the coordinates of first frame / first

[PyMOL] odeling a sequence over a structure

2006-05-31 Thread geoui
Hi all ... I'm not sure weather the pymol mailing list is the best place to ask this but anyway ... I would like model a structure of a protein. I have a sequence of interest and I have a related structure which shares a very low sequence identity but is suppose to have a common fold. Do anyone

Re: [PyMOL] odeling a sequence over a structure

2006-05-31 Thread Virgile ADAM
Hi thibault, you can either try to download and install the full Threader soft from : http://bioinf.cs.ucl.ac.uk/threader/ or alternatively try the on-server version of PSIpred/(m)GenThreader from : http://bioinf.cs.ucl.ac.uk/psipred/psiform.html but it looks like this last has possibly some

Fwd: [PyMOL] problems with pymol installation

2006-05-31 Thread Savvas Savvides
Dear all, the problem with installing PyMol under Windows-XP (see message below) has been solved. I tried all kinds of tricks (including reinventing the wheel a number of times) but the only effective way to fix the problem was to reinstall the operating system from scratch, as has also been

[PyMOL] setting for 2 button mouse view mode

2006-05-31 Thread Seth Harris
Hi all, we have a user with a 2 button mouse who would like pymol to start up that way (i.e. without having to go to the mouse menu and select 2 button viewing mode every time he starts). I had a look around for a setting we could put into his pymolrc file, but the only things with promising

RE: [PyMOL] setting for 2 button mouse view mode

2006-05-31 Thread Warren DeLano
Seth, Please add config_mouse two_button to their pymolrc file. Cheers, Warren -Original Message- From: pymol-users-ad...@lists.sourceforge.net on behalf of Seth Harris Sent: Wed 5/31/2006 2:14 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] setting for 2 button mouse view

Re: [PyMOL] odeling a sequence over a structure

2006-05-31 Thread Noel Faux
Also try Modeller: http://www.salilab.org/modeller/ Cheers Noel ge...@embl-grenoble.fr wrote: Hi all ... I'm not sure weather the pymol mailing list is the best place to ask this but anyway ... I would like model a structure of a protein. I have a sequence of interest and I have a related