Hello everybody,
i found some cone related stuff in pyopengl (in contrib dir of pymol). Is it
usable from pymol in some way? It would be great to visualize vector-fields
with 3d-Arrows but you need a cone and a cylinder to construct them.
Probably the performance when setting up through
Hello,
I am showing three helices in my figure, and I would like to make 2 of them
semi-transparent while leaving the third one opaque. I haven't been able to
figure out how to do that. Could someone tell me if this is even possible in
PyMol and, if so, what the command(s) are. Thanks.
Hey Satinder,
transparency can only be set for objects, not for selections. Thus, you
have to create different objects corresponding to your helices. Like so:
create helix1, i. 23:30 # wherever your first helix is
create helix2and3, i. 40:45 or i. 70:83 # the other two helices
show
Am Mittwoch, 1. November 2006 21:37 schrieben Sie:
Hi Zheng,
In my PyMOL scripts for our ANM online server,
http://ignmtest.ccbb.pitt.edu/cgi-bin/anm/anm1.cgi
we are using CGO in PyMOL to show the vector field. I enclose an example in
the attachment. You can run the *.py file in PyMOL.
They used to have glasses things with a sort of wall arrangement
between the eyes that you could use to view cross-eye stereo if you
didn't have the knack of doing it by yourself. You could try to get
hold of some of those. Alternatively, just use a cross-eye stereo pic
and get people
Hi,
I would like to do something simple as list some atoms like those
selected and something like
print (sele)
doesn't seem to cut it and I've been browsing the manual and wiki for
an hour now.
Cheers,
Jurgen
--
Jurgen F. Doreleijers, Ph.D.
BMRB, Univ. of Wisconsin-Madison, WI, USA
never mind, i found it:
iterate sele, print %-4s %-4s %4s %s % (name, resn, resi, chain)
but i guess delsci beat me to that one by a minute
lol, thanks
-- Forwarded message --
From: Jurgen F. Doreleijers jurge...@gmail.com
Date: 1 nov 2006 17:39
Subject: simply list selected
Martin,
The PyOpenGL included with PyMOL is probably out of date. It hasn't seen
much use since it cannot interface with PyMOL's built-in ray tracer. In
contrast, CGO primitives can be ray traced, but as noted, CGOs are limited
to lines, spheres, cylinders, and triangles.
Cheers,
DeLano
PyMOL Users:
For the record, do note that the current open-source code and latest beta
executable builds (beta14) do support a few genuine per-atom and
per-triangle settings.
Available per-bond setttings: valence, line_width, line_color,
stick_radius, stick_transparency
Available per-atom
