[PyMOL] pymol and EM 'models'

2007-05-11 Thread Anastassis Perrakis
hi all - could one use pymol to read in EM/Tomography images in one the formats below: stacked images from IMOD .rec format. conversion of this stack of images to meta, patch, rib, or vrml ? Thanks, Tassos

[PyMOL] Question about electron density map with mtz file

2007-05-11 Thread adi di
Dear all, I am trying to put on the electron density. I only have .mtz file but I have a look at the manual and the program need XPLOR file. How can I get the XPLOR file or do I need to convert the mtz file to this - if so how can I do that? Thank you very much Best Regards Adiphol

[PyMOL] frozen command line on amd64

2007-05-11 Thread gerwald jogl
Hi, Pymol is behaving interestingly on my amd64 dual core, fedora core6 updated, python2.4. I have tried the precompiled version 0.99rev9 and the latest beta for linux-32bit and the only 64-bit I could see dated may 2006. The binary comes up as usual, but the tcl command line is frozen and

Re: [PyMOL] Question about electron density map with mtz file

2007-05-11 Thread Robert Campbell
Hi Adiphol * adi di adipho...@yahoo.com [2007-05-11 10:26] wrote: Dear all, I am trying to put on the electron density. I only have .mtz file but I have a look at the manual and the program need XPLOR file. How can I get the XPLOR file or do I need to convert the mtz file to this - if so

[PyMOL] Reading .MOE files in PyMOL 1.0 beta 23

2007-05-11 Thread DeLano Scientific
This message is for PyMOL users who also use the Molecular Operating Environment (MOE), a commmercial molecular modeling package published by the Chemical Computing Group (CCG). Incentive builds of PyMOL 1.00beta23 include the latest version of what will hopefully prove to be a broadly useful