Use the "translate" command to move one/both of the pdb molecules until they superimpose. Just interpolate the distance depending on how many frames you want to do and the distance separated.
Cheers, JTM "We can be sure that if a detailed understanding of the molecular basis of chemo-therapeutic activity were to be obtained, the advance of medicine would be greatly accelerated." Linus Pauling, Nobel Laureate 1954 "...everything that living things do can be understood in terms of the jigglings and wigglings of atoms." Richard Feynman, Nobel Laureate 1965 **************************************** Jason Thomas Maynes, PhD/MD Department of Biochemistry and Molecular Biophysics Resident in Anaesthesia and Paediatrics Faculty of Medicine Washington University in St. Louis jmay...@biochem.wustl.edu **************************************** > > Hi, > I have two pdb files that I want to superimpose them onto each other. (I > know how to do this part) > however, at the same time i want to generate a movie showing those two pdb > files going into each other. > Does anyone know how to do it? > Thanks in advance. > > Hasan Demirci > Department of Molecular Biology, Cellular Biology & Biochemistry > Brown University > 69 Brown Street > Providence, RI 02912 > > (401) 863-3652 lab > (401) 226-7852 cell > > hasan_demi...@brown.edu > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
