Re: [PyMOL] getting a list of main-chain hydrogen bonds

2008-05-05 Thread Tomoko Niwa
Dear Rob Thanks a lot. print_hb_list.py is really what I wanted. As I'm a beginner of python, your script is very helpful. Thanks again, Tomoko 2008/5/6 Robert Campbell : > Hi Tomoko, > > On Mon, 05 May 2008 18:26:17 +0900, Tomoko Niwa > wrote: > > > Thanks for kind advices. > > > > What

Re: [PyMOL] getting a list of main-chain hydrogen bonds

2008-05-05 Thread Robert Campbell
Hi Tomoko, On Mon, 05 May 2008 18:26:17 +0900, Tomoko Niwa wrote: > Thanks for kind advices. > > Whatif and PISA worked excellently, but I want to get the list within Pymol. > > > By parsing the pymol modules, I found > > hb = cmd.find_pairs("((byres "+sss1+") and n;n)", >

Re: [PyMOL] getting a list of main-chain hydrogen bonds

2008-05-05 Thread Tomoko Niwa
Thanks for kind advices. Whatif and PISA worked excellently, but I want to get the list within Pymol. By parsing the pymol modules, I found hb = cmd.find_pairs("((byres "+sss1+") and n;n)", "((byres "+sss1+") and n;o)",mode=1, cutoff=3