[PyMOL] Electron density map in pymol

2008-09-26 Thread Jhon Thomas
Hello all pymol users I am new to pymol and trying to open a .xplor map file in pymol to get the electron density map of publication grade. The command i write for pymol to open the file and show electron density map is - 1) I convert ccp4 .map file into the .xplor file through mapman. #

Re: [PyMOL] Electron density map in pymol

2008-09-26 Thread Folmer Fredslund
2008/9/26 Jhon Thomas jhon1.tho...@gmail.com: Hello all pymol users I am new to pymol and trying to open a .xplor map file in pymol to get the electron density map of publication grade. The command i write for pymol to open the file and show electron density map is - 1) I convert ccp4

Re: [PyMOL] Electron density map in pymol

2008-09-26 Thread Folmer Fredslund
2008/9/26 Jhon Thomas jhon1.tho...@gmail.com: hello Mr. Fredslund I tried the way you have written but it is not working-- map file name - test_map.xplor load test_map.xplor isomeah map, test_map.xplor, 2.0, site, carve=1.6 Is this is the correct of writing the command Dear Mr. Thomas

Re: [PyMOL] Electron density map in pymol

2008-09-26 Thread Schubert, Carsten [PRDUS]
Jhon, all the newer builds of PyMol are able to read ccp4 maps, no need to convert to xplor format. As far as your commands are concerned, you are almost there. Try this: load mymap.ccp4, format=ccp4, mymap isomesh map, mymap, 2.0, site, carve=1.6 were map is the name of the map graphical