Use my hydrophobicity script... Please build this in as preset as I use
it all the time.
# Written by H. Adam Steinberg
# 08/22/2007
###set custom colors for each amino acid based on hydrophobicity scale
(scale derived by S. D. Black and D. R.
Mould):
set_color ala, [0.525490196, 0.792156863,
Sébastien,
You are correct that PyMOL cannot properly handle structures which do not have
unique names within a given residue.The rename command will make sure all
atoms are unique identified:
rename selection
For example:
fragment arg, myobj
alter myobj,name=''
Hi everyone,
I have a set of 30 frames and I use set show_all,1 to display them
all. Now I want to visualize all frames by giving the protein in each
frame a different color. If possible, I would like to use the spectrum
command for that since it provides all the pre-defined color gradients.
Is
